Array 1 17-1124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDSI01000013.1 Schleiferia thermophila str. Yellowstone isolate OS-Red contig00013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 17 46 100.0 30 .............................................. GCATAGGGGCGGCAATTGGGGCTGCTTTGC 93 46 100.0 30 .............................................. GCAATCCAGGTGGTAGGCGTAAAAAGATAG 169 46 100.0 30 .............................................. GCTTTAGCGCACTATGGGCTGTAGTCCATT 245 46 100.0 30 .............................................. ACTTACGTCGGTTGAGGTTTCATCGGATGA 321 46 100.0 29 .............................................. TCACTAAGTGATAATGTTGCGCCAATTGT 396 46 100.0 29 .............................................. ATGCCGCTGCCAGAACTCGTCACGCCAAA 471 46 100.0 30 .............................................. ACGACAAAAAACAGATAGCCGAAGCAATAA 547 46 100.0 30 .............................................. CCGGTGCCGCATTAATTACCGTCGTAAATA 623 46 100.0 30 .............................................. CGACCTTGCCATCAGAGAGTTCGGCGACTC 699 46 100.0 30 .............................................. TGCCAACTACCTTTAGCAACCTGTTTGGTT 775 46 100.0 30 .............................................. TCACTTTGAAAGTGTATCGAATTTGTTTGC 851 46 97.8 30 ..........................T................... CGGCACTTGGCCGGGGTATGTGGTGAGGGC 927 46 100.0 30 .............................................. CCAAATCCGAAATCATCCAGAAGCAGACCG 1003 46 100.0 30 .............................................. TGATATACAAAGCAGTTCCAGCCATCGTTA 1079 46 91.3 0 ......................................G.A.TT.. | ========== ====== ====== ====== ============================================== ============================== ================== 15 46 99.3 30 AATGTCAATGAGCCAAAAATACTAAAAATTGAAAGGAAATCACAAC # Left flank : TGTTGCGCCAATTGTTA # Right flank : CTTTAACAATCCAAGTACCTTATAGAATATTGTGACAATAACATTTTAACATTTTATACAATAGATTTGATGTTTAATTAATCCCTTAAGAAAACAAATATGTTTTAAAATTTCCATATTAATTCACCATCAGGTTTAATTTCAAAATCAATTCGTTCGAAAACACAATTTAATTTTCGTGCTTTTAATTTTAAACGATATTGATATTTTGATACATCAAATTCAGTATAACCATCTTTTCCATGTGAAAGTTTTTGAAATTCGTCATCTATTCTTGCGTCAATGTGATTTTGTAAATAAATATAAGGTGAACCTATTTCATTAAATTTATAAACAATGAAAACTCTATTTTGCAATTCGTTTGATTTAAGTTCTTTCAATTCCTCCTTGTTTTTTTCATAAAATATTACCTTGTAACCTACTTTTATTATAGCCCTTAAAGGTAAACCAAGTAATTGATTTAGTTCATTTTCCTTCCAAATTTTTTTTATTGAAATACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGTCAATGAGCCAAAAATACTAAAAATTGAAAGGAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 227-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDSI01000015.1 Schleiferia thermophila str. Yellowstone isolate OS-Red contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 226 46 100.0 30 .............................................. AACGTCGTAAGACAAGATCTTCTCAGGCAT 150 46 100.0 30 .............................................. TGACTTTGATGAGCGCCAGATGAACGATGA 74 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 3 46 100.0 30 AATGTCAATGAGCCAAAAATACTAAAAATTGAAAGGAAATCACAAC # Left flank : AAAAAAATACTTTATCCAAACCTGGAATAACACTGAAATCGAATATGAAAACCCGCTTAAACGCTTACCGAATTATGTGGTTGTTTGTGTATTTCGACCTTCCCACCCAAACCAAACAAGACAAGAAAGCCTATGCCCAATTTCGAAAAGAGTTGCTCTTCGATGGCTTTATGATGATTCAATATTCTATCTATGCCAGGCACTGTGCCAGTCGCGAAAACCTTGAAGTGCACAAAAAGCGAGTTAAATCCGTAATTCCGGAAAAGGGCAACGTCATCTTGTTTGAGATCACAGACAAGCAGTTTGGAATGATGGAGTTTTATACCGGAAAAACAAAGCCGAAAAAGACACCTGACCAACGAGTCATTCAGTTGGAATTGGAGTTGTTTTGATGTAAAAAATCACATAAAATCAAAAAAAAGAGGGTTGATCACCCTCGTTTTTTTGATTGCACAACAAGTTGTATTTACTTGGTTATGCGAACTTTAGAGGCTCTTCTA # Right flank : CCTACCGATATTCCTTCATTAAGCGAAAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGTCAATGAGCCAAAAATACTAAAAATTGAAAGGAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //