Array 1 111925-109394 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGM01000003.1 Salmonella enterica strain BCW_5911 NODE_3_length_358331_cov_4.0423, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111924 29 100.0 32 ............................. AATTAAATGAAATACGACAGCGCACGTTAAAA 111863 29 100.0 32 ............................. CACCTGGTCGAGGGCTCGAATCGGTGAATAAT 111802 29 100.0 32 ............................. AAATCCATTCTTGCGATACGATTAATTTACTT 111741 29 100.0 32 ............................. CAGCCAGTGCCGGTAGTGCAGACGCAGCAGCC 111680 29 100.0 32 ............................. GCGATTACTGATGGCGGCGTGTGGTTCGGTGA 111619 29 100.0 32 ............................. TATGCGTAACCAGTAAATAAAACTGTTACGTG 111558 29 100.0 32 ............................. ATTTCGTTATACCCCTTCACAACCTCGGCAGG 111497 29 100.0 32 ............................. TTATGCGGCTTTCTACTCCAGTGCGGCGCAAG 111436 29 100.0 32 ............................. TTGATGTCATGTCGTGTACAGACGCTGCGTCA 111375 29 100.0 32 ............................. GGTACGCGACATATAACGGCATGGGGCGTGAA 111314 29 100.0 32 ............................. CGCTGGTTTATGACATCGCCGACATGATCAAA 111253 29 100.0 32 ............................. ACTGCGTGACGCCGCCATCAGGAATGTTAATA 111192 29 100.0 32 ............................. GCCATTGAAATCATTAACAGCGATAAAATTTG 111131 29 100.0 32 ............................. GCGGGTAAAAATGCAGACTGATATCAAACGCA 111070 29 100.0 32 ............................. TAACCTCTGAATTAAGATGCGGTTTGTACGGC 111009 29 100.0 32 ............................. CCGGATTAACCGGCTTCATTGTTGGTGGGGGA 110948 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGCGTT 110887 29 100.0 32 ............................. GCGTACACGGTTAAACTTATATAGTGACACGT 110826 29 100.0 32 ............................. CCCCGGAAGTGGCCGGGGAAACAAGGCAAGTC 110765 29 100.0 32 ............................. TACCAGGATACCCTGAAACGCTACCGTGTCCC 110704 29 100.0 32 ............................. CGCAGCAGCGAAGACCTGAAAGACGCCGTGAG 110643 29 100.0 32 ............................. GACTGTTTTCATATATCACCCCTTGCTCCAAA 110582 29 100.0 32 ............................. CAGCGCCCGCCGGTGTTGCGCTACCGCGTGTT 110521 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 110460 29 100.0 32 ............................. CCATTGATGAGGCTATCGCAGCCGCACAACGG 110399 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 110338 29 100.0 32 ............................. TCTCGCCGCATAAAAAAAACACAGCTCTACTA 110277 29 100.0 32 ............................. TTACGATCAAATGTTAGCGTCATTTTATGACC 110216 29 100.0 32 ............................. GCAGTCGCTGACCTGTACGCCCTGTGCTGGCA 110155 29 100.0 32 ............................. CGCTCGCATGATGGCGCGATTACTTAATGTCA 110094 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGACTGAACA 110033 29 100.0 32 ............................. TCTCGCCAGTGGCCTGAACCGAAAGACGGTGA 109972 29 100.0 32 ............................. CACATCACGGATGTGGTCTGCATTTTGAAATC 109911 29 100.0 32 ............................. GAAATAACTATGTTTTGCTCTGCATTATCTTC 109850 29 100.0 32 ............................. TTGACGCGGAGATATATTCATTCAATAAATCC 109789 29 100.0 32 ............................. CGGAACTTGTAAAGGCGACGCAGGGTTTAACC 109728 29 100.0 32 ............................. TATGGAAATCAAGGCGCTGGCAGACGGGGAGT 109667 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 109606 29 100.0 32 ............................. CGAAGTTTCAGGCGTTACCGCCTGCGGAACGG 109545 29 96.6 32 ....A........................ AAGACAACTCCTGTCTTTCCATCACTCGAAGC 109484 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 109423 29 96.6 0 A............................ | A [109396] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGTCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGTGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCTCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129488-128606 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGM01000003.1 Salmonella enterica strain BCW_5911 NODE_3_length_358331_cov_4.0423, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129487 29 100.0 32 ............................. GGGCTAACGCCATTAAAAGAACTGGTTCCGTA 129426 29 100.0 32 ............................. CGGTGCTAAAGTTCGGAGAAGATCCCCACGCC 129365 29 100.0 32 ............................. TAGCCGGGTTCGAGTCGATGAAGCAATCCGTC 129304 29 96.6 32 ............................A CGCGTCCGACTGAAATCACGCCTCTGTATCCC 129243 29 100.0 32 ............................. ATAAAATTAAAAATGTGACCCATGTCAATAAA 129182 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 129121 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 129060 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 128999 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 128938 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 128877 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 128816 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 128755 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 128694 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 128633 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //