Array 1 196349-196954 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMF02000018.1 Leptospira noguchii str. 1993005606 ctg7180000020867, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 196349 37 100.0 36 ..................................... ATTCTCTGGGTTTACTTGTGCCCAAATGTGAGGTAT 196422 37 100.0 34 ..................................... TGCTTCTTTCAGGGTTTCGTTGTAGAGGGCCTGA 196493 37 100.0 34 ..................................... TTTTTCAGGCATTTCGGGGAACGCCTTGCTTACG 196564 37 100.0 33 ..................................... TTGTTCCTCTGCTCCATCCCCGCATTCCGAAGC 196634 37 100.0 34 ..................................... GTTTTTGACTGGGTTTCCGTTGCAACCTTTAGAA 196705 37 100.0 34 ..................................... TTTTTGCGCTTAATTAAATACCGGATCTCACAAT 196776 37 100.0 34 ..................................... GTTTTTGACTGGGTTTCCGTTGCAACCTTTAGAA 196847 37 100.0 34 ..................................... TTTTTGCGCTTAATTAAATACCGGATCTCACAAT 196918 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 100.0 34 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : AGAAAACTATTCTGAAAAACAAAAAGATACTTTCAATTCTCTTAAAGTAAATCTGTATGAAGTTGGCAGGGGATGGCAGATCAAAGAGGCCTTTAAGAAGTTTTGGTCTTTCAGTTATAAAGGTAACGCGGAAAAGTTTTTCAAACGTTGGTATTTTTGGGCTACTCATTCTAAACTTAAACCGATCATCAAAGTGGCCAAAATGCTTAAGAGAAATCTTAAATACATCCTTACTTATTTCTCTCATCGTATTACAAACGCCGGTTCGGAAAGTATGAATTCAAGAATTCAAAAAATTAAATCGAATGCAAGAGGCTTTAGAAACTTCCAATTCTTTCGTATCTCTATTCTCTTTCATTTAGGCGGTTTGAACCTTTATCCATGATATTACCGGAGGAGCCACGTTTATTCAGTATGGCACATACAGACTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATACGATGTAATCAATGTAAAAACAATTGAGGCGAGAAACTTAGTGTTTCATAGATAGGATTTGAGTTTAGATCACGCTCTAAACTCAAAATCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTGAATTTCAAATGAAAGTATGGAATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAATTTTTAGATACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATCATTTTTCCTCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 9364-9530 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMF02000111.1 Leptospira noguchii str. 1993005606 ctg7180000020808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 9364 31 100.0 36 ............................... TGCAGAGCGACCCTTAGGGAGCGATGCATTGAGTTC 9431 31 100.0 38 ............................... AGAAAACTCAGCGAATGTCTCTCTAAGGATCGGCATTC 9500 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 3 31 100.0 38 AGGAGAGCGTTTTGCTGAGTTAACGCGACCC # Left flank : GATAAAGACACGCAGATATAAGGATATTTTTTATCGTCTTTAAGACGAACGTTAAAACGAGGATTGTGTTTTTTGATCAGAGTCGCTTCTAAAATCAAAGCTTCTTTTTCGGTTCCGGTAGCGATCCAATCTAGATCGAATATTTCTTTTTGAAGTACTTTTGTTTTTACATCCGGGTGATTTTCTTTAAGATAACTTCTAACTCGTTTATCTAAATTTTTAGCCTTGCCTACGTATAAAACTTCTCCTTTTTTAGATTTCCAAAGGTAACAACCCGGAGAAGCTCCTAGATTTTTTATCTTTTCTAAAATTAAAGTATGATTTAAGATTTCAGGCATATTGTAGTTTTTTAATATAGATTAAGATTGAGTTTATAAGGTTTTAAATTTTGTAGGAACTTTTACAAAATTTCGTTTTTTCTCATGATTCTATTTGTATCCTTAAAAATGTATGAGTTCCTACAACTCTGAGTCTGCTCCAAAACCTAAAACGCGACCCTT # Right flank : CAGAAAACTCAGCGAATGTCTCTTCTAAAGACCGGCGTTTTATTGAGTCCAAGAAACGAGACGCTTTAGTTATTACTTCGAGCAGCAACAAAAACAAGGCGTTTTCGTTTTACAAAAACTGTGGAAACTCATACAAAATTATAATAACAAAAGAATTCTAAAAGCTATAAATCATACAATACTACGATTTTTATGGGAACTAACTTTCCATTCAGTCTTAAACGAATATAAATTAAAATTCAAAAGTAATACGAAAATGCAGTAGCTCCCACAAAATATGTGCATTCCCAATTTCAAAATGGTTTATTAAACACGTAAACTTGTATGAGTTCCCACAACTGACAATAATGGATTGAAACTCAATACAGCTATCTCCGACTCCATTTAGTATCTTTCTACTTCGTTTTCAACTTCTTTCAATTCGACTTCAAAATTCTCATCCTCTTCTAAAGAAATAGCAGAAAAATTTTGATCTTTTCTGGAATACTTTTCTTTCTTTC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGAGAGCGTTTTGCTGAGTTAACGCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3129-2306 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMF02000120.1 Leptospira noguchii str. 1993005606 ctg7180000020861, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3128 29 100.0 32 ............................. ACCTTCTGAGTAATTTATTTCCTAGAATCCCA 3067 29 100.0 32 ............................. TGATTCTCACAAGTTTCCAGATTTTTTAAAAC 3006 29 100.0 32 ............................. GAACCTGGATACGGGTAGAGTTAGAATTTAAA 2945 29 100.0 32 ............................. ACAATGTGGAATGGTTAACCAAACATATTACA 2884 29 100.0 32 ............................. CGGTTGGAACCAAACAGATCCTGGAATTGTAA 2823 29 100.0 32 ............................. CGACAAAAAGGCCGACAATAGCGATAAACCTA C [2809] 2761 29 100.0 32 ............................. TGGTGTATCGTCACCAAAAACGGGCGTGGTGT 2700 29 100.0 32 ............................. CAAGAATCGAAAATGAATCGTCAGTCGTTAGT 2639 29 100.0 32 ............................. AGAACCCGAACTGATAACGTTCAACAATCCGA 2578 29 100.0 32 ............................. TTAACGCTGATGAGATTGCAAAAAGAATTTTT 2517 29 100.0 32 ............................. ACGTTATTGAGTCTTTATCATCGTCTAAAGAC 2456 29 100.0 32 ............................. CCGCTTGCAGCTGGGCAAGGCTGGGCAATCTA 2395 29 100.0 32 ............................. GTTACAGAATGGCGTTATGATTATGTAGATTT 2334 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 CTATTCCCCACAGGCGTGGGGTTGAACCG # Left flank : CAAAGTAAATTGTTAAAACGCATTATTCCCGATATGAAGGAGTTAATCTATGGTGGTACTGATCCTGGAGAGGGTGAAGACTTCACAGAGGGGCGAGATGTCGCGGTTAGCCATTGAGTTAAAACCGGGCGTTTTTGTTGCAACCGTTGGCGCAAGAGTTCGTGATCAAATCTGGAAAAAGATTTGTGAAGAATGGAAATCGGACGCTCTCATGCTATATTCGAGCAACACCGAACAAGGTTATATCATTCGTTCGAATGGAGATCCATCCAGAGAGATTGTCGAGTTTGACGGTATTCAATTGATTGCCAAGCCCGATCCGAAAAGTGACCATATACAAATTACCGATGAGATTGACGAATCAAATACCGAAATCAATTCTCCATTTCCAAATATAGAAGAATTTTTTGTAGAGAAGGCAGACTCTCTTCGCGCAGAACTGGATCAAAATCTAAATAATCCGTAGACATAATATTAGATCTACTATACAAATTCTTAGA # Right flank : AGATTTAACTAATATGAGTTCGGTCTAAGGAGAGATTAAAAGTTGTAAATTGTCTTTAGATCTCAAATTCAAAGACGGTTTTTTTGGAAAGAATGAAAATGCAACTAAACCACTTAAAAGATTAACAGCCCAATTGCAAAAGCTGCGATGTCTAGTATGTTGAATCTGGCATATATTTTTAAGTTCATCGTTAACCGATTCAATGATAGCTCTTTTTCTTAAAAGAATTTTGTCGACTAAGAGCCGGTCTCAAAACTATCTATTAAAGAAATTGAAAACAATAATAGTGCTGGCGAGGTAAAGAGAAGCCATATAATTTTCCGATTTTCTTTCCCAACGGATAAGGATAGCTCTGAATCGATTGTGCCAACTGTTCGTTCTTTCAACGACCCATCTTCGAGGCTTTCCATTATATTTACCGATCAATGGTTTCTCGCCTCTTCTTCGAATGTGAGGCCGGATATTTCTTCTTCTAATTAATTTTTCCGTATCTTTGAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACAGGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 14527-12994 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMF02000100.1 Leptospira noguchii str. 1993005606 ctg7180000020823, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 14526 37 100.0 34 ..................................... ACGGTATTGACCTTGTTGAATCGGATCAGATTCC 14455 37 100.0 33 ..................................... TTCTTAGTCGGAATGCAATCCTTGATGCGTTCA 14385 37 100.0 36 ..................................... ATAATCTAATCAAGGTTTCTATCACTCCAACCGGAT 14312 37 100.0 33 ..................................... TTCGATGTTTTTTGCAACATCAAATAGATCCGA 14242 37 100.0 35 ..................................... CTCAAATGAATTCATTTTTTTTAACCTTATAAGTT 14170 37 100.0 34 ..................................... TTCATCCATTGGATCGGATTCTTTTAATCGCCTC 14099 37 100.0 34 ..................................... AATAGGTTTCTGCCCGGTGCGGTCCTGCATGCAT 14028 37 100.0 33 ..................................... TTTTCATCATTTCTTTCCCGAAAATTTCCCAAA 13958 37 100.0 35 ..................................... AAGATGCCCGCCGACTTTTAATCCCGTTTTCTCGC 13886 37 100.0 36 ..................................... CATTTCAACTCCTTGAGATCTTCTGCAATCTCGTCT 13813 37 100.0 36 ..................................... TTTTTCCGGAGAGATGGTTCGATCTATATTAGAAAA 13740 37 100.0 33 ..................................... AAAAGCGCCAACGCCGTCAAAAAAACCGGAGCC 13670 37 100.0 33 ..................................... TGATTTGCTCATAATGTAATCCGATCTGGCTCA 13600 37 100.0 33 ..................................... TGATTTGCTCATAATGTAATCCGATCTGGCTCA 13530 37 100.0 36 ..................................... ATTTTGTAAGTAGAAAGGAAGTGAGATGAAGTTATC 13457 37 100.0 34 ..................................... TATATCAATAGACAAGTTTCCGTGTTTTGTTTTT 13386 37 100.0 34 ..................................... ACCTACACAGTTAGGTGCAATAGTAGTATAGGAC 13315 37 100.0 34 ..................................... TTTGGCCCAGAACTTGTGCCGACTAAATATCTTC 13244 37 100.0 35 ..................................... TTAGATAATCTTCGATCTGGCTCATCATGTCTTGA 13172 37 100.0 35 ..................................... TCTGATTGTGGCTCGGTTGTCTCAGCCTTCTCCTC 13100 37 100.0 33 ..................................... CTCCGCAAAATCCAAGAAGAAATTGAAGATAAT 13030 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ==================================== ================== 22 37 99.9 34 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : AGAAAATTATTCTGAAAAACAAAAAGATACTTTCAATTCTCTTAAAGTAAATCTGTATAAAGTTGGCAGGGGATGGCAGATCAAAGAGGCCTTTAAGAAGTTTTGGTCTTTCAGTTATAAAGGTAACGCGGAAAAGTTTTTCAAACGTTGGTATTTTTGGGCTACTCATTCTAAACTTAAACCGATCATCAAAGTGGCCAAAATGCTTAAGAGAAATCTTAAATACATCCTTACTTATTTCTCTCATCGTATTACAAACGCCGGTTCGGAAAGTATGAATTCAAGAATTCAAAAAATTAAATCGAATGCAAGAGGCTTTAGAAACTTCCAATTCTTTCGTATCTCTATTCTCTTTCATTTAGGCGGTTTGAACCTTTATCCATGATATTACCGGAGGAGCCACGTTTGTTCAGCATAGCAAAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATTATTTTGGATCCTATCAAGCCGCT # Right flank : GATTACTTATATAGTTTCCTTGGATTCAGTCGGATTGTGAAGTTTATAGATTTTTAAATTGCATTCTTACTGTTCAATTCAGTGGTAGTTCCCACAGATTTTGTCGCATTACGAGTTTTTAAACATTCATTTTTCGTAATTAGAATTTGTAATAGTTCCCACATTTTATTTTTACGGAAAAATCAGTTTTTATAAAGTAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTCACCGGGTTTTTCGATGATTTTGCTTTTTACATTTCAATTCTGGATAACATTTCATTTGCGTTGACCCTTTTTCAGAGACGACTATAAACTACCTACATAACGTGAGTTCGACGTAAGAAAATTGGGGCGAATAATAAACTCAATGCAACGACTCCCTATGGGTCGTCGTCGCAGCTCGCAAATTTCATAGTTAAAATGGCTCACGACCCGTCGAGCGACCCTAGAAGCGAGACGCTGAGTTTCAAACGCTTTCGTAAAAAGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 26784-27747 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMF02000085.1 Leptospira noguchii str. 1993005606 ctg7180000020869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 26784 37 100.0 34 ..................................... TTCTAAATGCCTTGAACCAAGCATGAGAAGAAGT 26855 37 100.0 35 ..................................... ACTTAGTTCTTACGCGGGACTCACAAATCTTGATA 26927 37 100.0 34 ..................................... TCTGTCGATTCTTTCAATCGTATCTCCGGATTCG 26998 37 100.0 34 ..................................... TTTTTCACTTCTCCGAGAAGATCAGCGGTGTCCT 27069 37 100.0 34 ..................................... ACGAAAGACGGAGCCTGTGGAACTGCGGAATTTC 27140 37 100.0 36 ..................................... AATTTTCTTCTGCTCATCTAAGGAGATGTTTACTAG 27213 37 100.0 33 ..................................... CTTCCAGCCCTCGCCATCTACGTATAAGTTAAC 27283 37 100.0 34 ..................................... TCTGCTTTTTTGAGATCTTTATACATATGGGTAA 27354 37 100.0 36 ..................................... TTCAGCGCCGAATTTGTCCACCGTGATAAAGCTCGG 27427 37 100.0 34 ..................................... TTCTTATCGCCGAAACCGTTCAAATGCTGCTAAA 27498 37 100.0 34 ..................................... TTCATCGCTGTTTGGGAGTATACATTTTTTTAGA 27569 37 100.0 34 ..................................... TATTCGTTCACGTAAAACATTAGACCTTACTAAT 27640 37 100.0 34 ..................................... AATGGCTATGTTTTGGAAGTGAGTCCAACAATTC 27711 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 100.0 34 GTTTAACTTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : GTTCCTACAATTTTAAAATTCGTTCGTAAAATCATGATTTAAGGGAGTTCCCATATCATTTTACAGACAAACCTAAGTTTTGTACGGCGTTCCCACACCTGAATGGACAGTTTCAATTATTATAAAATTCTATTTTTTAATTTGTGGTAGTTCCCACATTTTTTATATAAAATTTAGTTTTCTATTAAACGTATACGGCTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTCTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAGCCGATCCTTTACAATGAAATACTTTTTTGCGAACCTGTTTCTCCCGATTCTTTGCAGACCTTTCGCGCTCTTGTATTGATTCGTTGTTTGGCGATTTGACAGCTTCGCTTAGCATTTGTTCAGCATGGTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCAACCCTATTAAGCCGCT # Right flank : TAAACGCGGATTTATATAACGTGAGTTCAGTCTAAAGAGAGATTAAAAGTTGAATTAACCTAGTTACGAATTATTGGACACATTTTTACGCAGCATTTACTTCAAATTGCACAGGACTCACAAAGTCTAATGACGAATGAGATCTGTGTCTATTATAATAAACTTCTATATGATCAAAAAGTAATTCTTCCGCTTCTTGAATTTTATAAAAGTAATTATATTCCATTTCTCCTTTCAGAGAACCAAAGAAGGACTCAGCGACTGCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACTTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 2733-1702 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMF02000134.1 Leptospira noguchii str. 1993005606 ctg7180000020872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2732 37 100.0 33 ..................................... ATATTCAAAATAAATTAGGTTATAATACGTATG 2662 37 100.0 35 ..................................... CTATTTCAAAATTCCCGTATTGATAATGTCCTAAT 2590 37 100.0 36 ..................................... ACTGATCCCGTCTTTCGGAAACTTGGAGTAATACTT 2517 37 100.0 35 ..................................... TTATATTAAATCGGAAATTGAAAATATTCAGGCAT 2445 37 100.0 35 ..................................... TCTAAATACGTTTTACCTGAGTCCCAAGATGTGTT 2373 37 100.0 35 ..................................... TTACCAAGATCCCAAACACGGAAACGAGATTTTTT 2301 37 100.0 34 ..................................... TTACCATCGAAAAAGCACTTACACAATTTATCCA 2230 37 100.0 34 ..................................... ATCTTAGCGCTTTCCGCGTTGTATCCGTTGGCAT 2159 37 100.0 33 ..................................... ACCCGTCGTATTTTTTGCGGTGATGTGATGTAT 2089 37 100.0 34 ..................................... ATTTTCCTGGCAATCATAGTACGAGTGATTTTGG 2018 37 100.0 34 ..................................... AGAAATCTCTGTTTCGATCTCTTTGCTCGCATCT 1947 37 100.0 34 ..................................... CTTTTTGAAGTTCTCTGATTTGAGGCATTATCAA 1876 37 100.0 33 ..................................... CGGTTCCGGGTCTTCGTTTAACAGTGTAGCAAA 1806 37 100.0 33 ..................................... TAAGTAACTCCAAGAGTCCGCCCGTGCTTTTTC 1736 35 86.5 0 .......A...A....A....--.............. | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 99.1 34 GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Left flank : AATTCGGGCATGAATCAATGTCTGAAATTGCATCGTGTCCAAATGACGCCACGTTCTTTTTTCTGTATGATCTTTACGAGGACATCGTTTACCACAGTCCGGGCACTCTACCATTTCTTTCTCATCGTATACGACTTCGATATCTACCCTCTTAGTTGTTACATTTAATTCAACGCTTTCAACAGACCACGGTGATAAAATTCCTAAAAGAAGCGAATAATGGGCTTCTAACTTTTCGTTTGGGTTCATTAGAAATATTATTCATTTATTATATTTTACTTTTTCAATGAATAATTTTTACAGACAATTCATTTCTCATATTACCGTCGTTTATGTAGTAGTTCTTTCACATGATATTACCGGAGGAGCCTCGTTTATGTAGTAGTTCTTTCCCATGATATTACCGGAGGAGCCACGTTTTCAATAGGTTCGCGATAATTATGTCTAGAAAAGCTAATAAAGCTTTCCCTAATACATCAATTAGGGCCTGTGCCGCCGCT # Right flank : TTTGTTTGAGATGAGTTTCATTTAAAATTTTCAGAATTTATCTGTAAAAATCATGGCTTACTTTAATCCTCTGTATTCAAAAGCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACCATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAGAGTATTTTCGAGATAACTTTTATCGATCCCTACAAAATCAAGTACCTAAAGTTATGATAAAGTGTCGGTTAACGTGTTTTCGGGATAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTCCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTATAGAGTAGTATTTCTATAAATTCTGTAGACTACAGAATTTATATTGATTTTGAGAATTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTGAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 9727-8766 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMF02000043.1 Leptospira noguchii str. 1993005606 ctg7180000020795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 9726 37 100.0 35 ..................................... GATAATAGAGATCGAACCGGGCACTACATTTCCGG 9654 37 100.0 34 ..................................... GAGAATACATGTGCACCTTTGAGCAATTGGACAT 9583 37 100.0 35 ..................................... TATTTTTCTAAGTCCTTCTTGGATCACCGTTTTCT 9511 37 100.0 33 ..................................... TTTTCTGCTTTGGTTTTTATAAGACTCTGTGCT 9441 37 100.0 35 ..................................... ATATTTTTGTCGCAATTCTAATGGAAGCTGTCGTC 9369 37 100.0 33 ..................................... CTAATATCGGCTTTATTATGCTCTTTCTTAAAT 9299 37 100.0 33 ..................................... TTTCTTGTGAATTATTCAATGGTTTGTGGCAGA 9229 37 100.0 36 ..................................... TGGGTTTAAGCTCATCGCTTTAACTCCAGATCTTGC 9156 37 100.0 33 ..................................... TTGGATGGCTTTATCTCAGTTTCGCATTGCTTT 9086 37 100.0 34 ..................................... AGAAGCGCTTTGATTTTGACCTAGGGATCGAAGT 9015 37 100.0 33 ..................................... AAAGTTTTCGTAGGAGTCTTTCCATACTTTCCT 8945 37 100.0 35 ..................................... TTTGTTGCCCGTGATCTTCCAAAGGGTCTTGAGTT 8873 37 100.0 34 ..................................... TTATAGATGAATACAATAAAAAATCAAAATTGAC 8802 37 97.3 0 ...................................T. | ========== ====== ====== ====== ===================================== ==================================== ================== 14 37 99.8 34 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : TAAGCCATAATTTCTGAAATACACAATCGATTAGAGCTTCTATATTTTTACAATATTCCATCATTTGCTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCGCCAAAATTCTGAACGCTCTGATTCTATGGTTTCTGAGTTAATCAAGTCTTCAAGTTCAGCGTCTGGACAATCATCTCAACAAGAATAAATAGATTTTTGAATGGAATTTAAGTTAAATTTCAAAATTAATCTTTTTAGTCACACAAACTTAACAATTCGGAATTCAATTTTCTTGACTTTAAACAGTAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATTGATTGCGGTCGGTTCGCGTTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGGCTCCATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAACTTTTTCTAATACATCTATTAGGGCCTTTATAGCCGCT # Right flank : ATTGAAAACATCTTCGAAAAACGTTGAACACGACTTAAGTAGTCCCTGAAAAAGTGTTCAAAAGACGAATAACGCAAATAAAACGTTATCCAGATGGATCGAATCAAAAACAAAATCACCGTAAAGCATCAAGAAGCCACGTAAAAGTCGGTAAAAATGAAACCAGAAGAAAGCTCAAAACAAAAAAATCAAGGTGAACTATTTCGAAACAGATTAGATCATAGACACCCGTTGTATCAAATAGCGAACAAGATAGACTGGGAAAAGTTTGAGAAAGAATTTTGAAAGTATTACACAGAGAAGATGGGAGACCGGGCTTACAAATACAATTGTTAGTTAGACTTCACTACTTAGAAAACGTGTATAACGTATATGATGAGAAGGTGATTTAAAAAATCCGTATTAGCAACATTTCAAGTGGCTAGGGTTTTAGTCTTAGATGTTAGTTATATTTTCGTAATAGAGCGATTTCGGTTTAAACAAAGTAAAATCTCTCTAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //