Array 1 630603-630966 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL575016.1 Companilactobacillus farciminis KCTC 3681 = DSM 20184 strain KCTC 3681 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 630603 36 100.0 30 .................................... TATTTAACACTCACAACAGTAACCCAAGTA 630669 36 100.0 30 .................................... TAGCCGAAATTACCGCTTGGTTGAAAGCTC 630735 36 100.0 30 .................................... ATATTTGATGCGTATTCAACGTTTAGTTGA 630801 36 100.0 30 .................................... TACCTGCGAACATTAGTCTAGTGCCCCCCC 630867 36 100.0 27 .................................... AATAATTATTTCTAAAAGTATCAAGTA 630930 35 86.1 0 ...........CA........C.-...C........ | CT [630939] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTTTGTACCTTAAAGAATCTAGAAATAGTAAAAC # Left flank : AATTTCGTTTGGAAAATACCGGTTTACCAGTTTGGTTGATACTTTATAACTTAGATAGTTTTATCGCTCCAAGAGATATCGACTATTTATTGATTAAAGTTAAGGAGCTAATGAAAGAGTATGATTTGAAATTAATTTATTTGGGTAATAGTTTGAATAATATTCCACTAGATTCAAGTGAAATTGATGGTGTAGTGTTAGCGGCTGATGAATTTAACCAGTTACTGCCAATCGATGAATTGATGGAATCTATCAAGCTGCATTATCCTAATAACTTTAATATGTCCGAGAATGAGATTACTGATTCATTAAAAAGAATTATTCCGTTTATAGGAATTAAGGAAAAAGTGTTCATATCTAATAAAGATTTGGTATTATTAAAGGTAGTGAACGATATTTTAGGATATGAGACGTCGTATGATCTAAAATCTCAATCACTAACGGGTGCAGAAACCAAATTTTTGGAAGATTAATTGACGAATTAAGATTTTGAATTTGAG # Right flank : CCCAAAGAAGACTAGATCATGGTGGAATCTAGTCTTTTTATTTTTGCAAAAGTGTCATTAAATTTAATAATATTACATTTTTTCTAATTAATTTTAACTTTAACCATAAATACCTATTGCCCAAATTAATATTCTCGTTTATGATAGTCTCAAAACTTTCCAAGGAAGAGGGATCACTATGAAGGCAATTTTGACAGTAATTGGTCATGATCACGTTGGTATCGTGGCTAAAGTTTCAACTAAGTTGGCTGAATTGAACGTTAATATTATTGATATTTCGCAAACTTTGATGCACGAGAATTTTACAATGATGATGATGGTAACGCTCGATAACTCAACTCAATTTGACACGGTACAACAAGAGTTAGCTGGTCTTGGTCAAGAAACCGGTTTGGATATTCGCATTCAACGTCAAGAAATTTTCGATGCGATTCAAAAACTTTAGGGGGATCAATGATGGAAACTAATTCGATTTTAGAAACAATCCAGATGGTCTCTGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACCTTAAAGAATCTAGAAATAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 130682-131312 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL575017.1 Companilactobacillus farciminis KCTC 3681 = DSM 20184 strain KCTC 3681 scaffold00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 130682 37 97.3 29 ....................................G CGAGCAGCCTTTTCGAATTCATAAAGTTA 130748 37 100.0 29 ..................................... ACTGATTGCTTGGCTTTCTCATCGGTTGC 130814 37 100.0 29 ..................................... GGAATACCATACAAATTGGCGTAATAGCG 130880 37 100.0 29 ..................................... TGTGTATCATCAACCAAACCAATTGCTAA 130946 37 100.0 29 ..................................... CGTCAAGGTCAAGTTCCTTCTTGATATCC 131012 37 97.3 29 ..............C...................... AGTGGAATCATTTCTTCAATTCCTTCTAA 131078 37 97.3 30 .....................T............... TATCCTGAATTGCTTTGAAAATACTTATCC 131145 37 97.3 29 .....................T............... AATAATTACACCGGCATGCGTGAATCCGT 131211 37 83.8 29 ...........T......C..T.......G.T..T.. AGCTACAGTAAGGACAAAGATACAGTTAA 131277 36 81.1 0 ...C........C.C..........-T.C......T. | ========== ====== ====== ====== ===================================== ============================== ================== 10 37 95.4 29 GTTTTAGAAGTATGTCTTTCTATTTACTTAAGAACCT # Left flank : AATCTCAGTTCATTCAATCTCAATGCAAGTAGTCAAATGAGAATTATTTTAAAAAAGATAATCGAGGATTCACAAATAATGCTTAACGAAATTGAAAAAGTTAATGCCGATTTAAATAGCGTCGTTTTTGACTCCATTACTAGATATTCATTGCCCTTAACCCTTGATATGTATGCCAATTACGAGAAACTACTAAAATCAAAGGACATCAAAATAGATTTTAGTAGTTGGGCTAATTACTGTGATAAAATTATGGATGTAATCAGTTTTTATTCTGATTTCACTAATAAAAAAATGCTTATTTTTAACAACATTGGTCGCCTATTGAACGTTAATCAGTTAAATGAGATACATGCTTATCTAAAATCCGTTGATTTAAAGCTAGTTTCTTTAGAATCTTACCCTATGATTTTTAAGGAGGAAAAACTAAATGCTAAAGTCTATTCAATCGATAATGATCATGTTAGGTTTGATTATTAGAAGTTGATTAGAAAACAACG # Right flank : TGCTATACTTATCCTTGTTAAGAGATTCAAATCAATAAATCATTTTTAGTATGCTTACAAGTACGTCATCTCAATTACTTGCCTTAGAAGTAAATCATCTCAAACAAAAAGCTCTAGTACAGAATCCCAAAAGATTCCAATACTAGAGCTTTTCATTTTTTTATTTCAAACTCTTCATAACATAATCACCCAAAGTCCGGACACGTTTCAAATCGTCTTCGTCTGGATCTTGATCAATCTTCACGGAGTCAGCGACTTGTTCGCCGTTACTGGAATTCAGTCGCATCGTGAAATAATCTACCGCACGACCAAAGTGAATGTGTCCTTTGGAGCTTGATCCTAACACGGTAAACTTAGTTCTTTCCAAGTCAACATCGGCCAAATCTTCATAAAAATCTTGAGCTTCTTCTGGTACTTCGCCGTCATTATAAGTGTATGTGTCAACAATTACAGCATCGTATTCAGAAAGTTCATAAGCATCGGTATCGATTATTTGTTCT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTCTTTCTATTTACTTAAGAACCT # Alternate repeat : GTTTTAGAAGTATGTCTTTCTTTTTACTTAAGAACCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //