Array 1 156944-158231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWV010000002.1 Dickeya oryzae strain S20 Dickeya_oryzae_S20_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 156944 28 100.0 32 ............................ GGTCAATGCCGAACTTTGCAACGGCAGACAAA 157004 28 100.0 32 ............................ AGATGCAGCGGAGTTTCTGAAAGCGGTCAGCT 157064 28 100.0 32 ............................ CTATCCCGGCAATGAAAGAGTAATAGATAGAT 157124 28 100.0 32 ............................ TGACACAAACACAGATGCTACAGGCGATTGAG 157184 28 100.0 32 ............................ CAGACGGCCTGTGTAGTAACGATTTCGGCCTT 157244 28 100.0 32 ............................ GTCGCGTGAGTTCGAGCTGAAATTATCGGCTG 157304 28 100.0 32 ............................ GCCAGACTGCCACCAGAAATCAATGCACCGAT 157364 28 100.0 32 ............................ ATTGTCGCCAACCTTACTGGCCCGGATGTGAA 157424 28 100.0 32 ............................ CAGCAGGAATAACCGTACCAACCAGCCCTGAA 157484 28 100.0 32 ............................ AAACTTTATTGATAAACTCATTGGTAAACTCA 157544 28 100.0 32 ............................ AGGTGAAGCCTTTCATGGTCATCAGCCGGAAT 157604 28 100.0 32 ............................ TAACTATATGACCTGAAAGGCAATCCGTTTTC 157664 28 100.0 32 ............................ CAGACCCGCGTTCGGAGATGTCGCCTTGGCTG 157724 28 100.0 32 ............................ CGGCACGATGCACCCATATCGCCTCCGTGATT 157784 28 100.0 32 ............................ TTGCAAATAAATGCATCAGTAGGCACGCCGAA 157844 28 100.0 32 ............................ AGGAGGCGATCGAGCTGTCCGAGGCATGGGGC 157904 28 100.0 32 ............................ GTTTGCAGGGGCGTGACCTGTGGCTACACCCA 157964 28 100.0 32 ............................ TCGTCGTACTCTGCCAGCGCTGGAATAACAAC 158024 28 96.4 32 .A.......................... ATGCCAGAACGGGGCTCGAAAGTCCGAATAGT 158084 28 100.0 32 ............................ TTATTCGTCAGTTCAAAAAAGCCGAGGGGTTG 158144 28 100.0 32 ............................ TGCAAAGGCTGACATAACAAGAATGCGCCAAA 158204 28 75.0 0 .............C.......GGT.GTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.7 32 GTGAACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGAAATCCCGCCCATGGCGATATCGCACTGGTCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCACTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCGGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACCAATATCGACGTTGACCCTTTTTTTTCGCCCCGTTATAAATCGTTGATTTTCAATGATGACAAAGGCGGGTTTTAAAAAAGGGTTTCACGACCCAAAACACGGCTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTCTATCCCGCACGAAACCACCCACCACTCCCGCATACATTCGACAAACACATTCGCCAGCAACAGCCCGGCTATTTACCAACAGCCCAAAAACACTACTCCACCGTCAACACCGCTACCGCCTTTTTACGCTGTTTAATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCAAGAAACAGCAGGCACAGAATATTGGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 164347-163359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWV010000002.1 Dickeya oryzae strain S20 Dickeya_oryzae_S20_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164346 28 100.0 32 ............................ ACAACGGAAAGGGCGTTGTCCTACCGGAAAAT 164286 28 100.0 32 ............................ AACAAATGGCGACATGCTAATCGGCAGTCCAA 164226 28 100.0 32 ............................ TGGCGAAAATATCCCGACACGCCTACGAGAAG 164166 28 100.0 32 ............................ ACCAACGCGTCGGCTAATAGCCCGGACCGCAA 164106 28 100.0 32 ............................ AACCATCAATAGCATATTTATTTGCGCCAAAT 164046 28 100.0 32 ............................ TGACAATCATGATGTATAGGAGCATACAATGA 163986 28 100.0 32 ............................ GCCCGGAGTACACCCAGGATCCGAATTGATCC 163926 28 100.0 32 ............................ TGCGCACCCCATTGCGATCACATCAGCTGGGA 163866 28 100.0 32 ............................ GATGGTTCCGGCTTCCGTGCATGTTGCAGATA 163806 28 96.4 32 .............C.............. TTAACTCGCCGTTCTTTATCTGCAATTTGATT 163746 28 100.0 32 ............................ TTATTATTCCAGAACTGGCCGCTTTAATTCTC 163686 28 92.9 32 ...........TG............... CGCCAAGAGCGGGTTTCTTTTTGCCGGAGATT 163626 28 92.9 32 ...........TG............... GACACCATCATGTTTTCCACCGCCGATGGTGA 163566 28 92.9 32 ...........AG............... TGAGAGCATTACTGCTTCCATCAGCTCATTTG 163506 28 100.0 32 ............................ AGCATTTCGCTGTCTTCGAGCACACAAACCAT 163446 28 96.4 32 .............C.............. AGATTCAAGTTCCTGGCAGTTTGCCGTACCGA 163386 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGAATGACTGAGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCATCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCACTACAGGATAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCGATCTGGCCGCCAGAAAAAAAGGTTTTCCCGGAAAAACGGCAGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : CGCAGGGATTTGTATACAGTCGGTCACGTGCCGTTCACTGCCGAGTAGGCAGAGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGACAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAGCACCTCGGCTGTTGCCAACAGCCCATCCCCGGCGGGCATAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 172939-175190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWV010000002.1 Dickeya oryzae strain S20 Dickeya_oryzae_S20_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172939 28 100.0 33 ............................ AAAGACTGGTGTGAAGCGCAGGGACTGAATTAC 173000 28 100.0 32 ............................ AGTCTGCCGGATAACCTCAGTGTCTTCGGCTC 173060 28 100.0 32 ............................ AAATACGCATCGGCTGGAATGGCGATCCCTTT 173120 28 100.0 32 ............................ TGGCTGCCAGCAAGCAGAAAGCCGCGTGACAG 173180 28 100.0 32 ............................ GTGCTGCACGCGAACCTATGCATCGCATTTGC 173240 28 100.0 33 ............................ AGCAACATCAATATATCCGCCATTACGTTCCAC 173301 28 100.0 32 ............................ GATACTGACACCGCTGCCGCCGGTTGCCGACT 173361 28 100.0 32 ............................ TGCATGAGTCATTTCCGGTGTCGGCTGTTTTG 173421 28 100.0 32 ............................ GGTATGTCAGGGATTAATGGTACGCCATTGAC 173481 28 100.0 32 ............................ ACTGGCGGCTTGCCGGTGCTGCTGGGCTGGTT 173541 28 100.0 32 ............................ CAAGGCATAAAAAATGCCGCCGGGGCTCGTTT 173601 28 100.0 32 ............................ GCATCGATTGCGCCGTTCCACGACTCTGCAAC 173661 28 100.0 32 ............................ ACAACGGTAAGGGCACTCAGGTACCGCTTATA 173721 28 100.0 32 ............................ TATGAATATGTCAACAGAAATTGCTGTTGTTG 173781 28 100.0 32 ............................ CATCTAATTCACACTCACAACTATCATCAGCA 173841 28 100.0 32 ............................ ACCGAAAAGGCTGGCGCTGACCATATTCCTGA 173901 28 100.0 32 ............................ AAGGCTATTTTGCCCCGACCTATCCGCAGATC 173961 28 100.0 32 ............................ TATCTCAGGGTGCCGATGCTGCCGTGGTCGCC 174021 28 100.0 32 ............................ GCTAACGCTGTTAGCCAGTTGAAATGGTTCCG 174081 28 100.0 32 ............................ GCAATACAAAATTGACCCCCAGAAACGCAAAA 174141 28 100.0 32 ............................ CCACCCGTATTTCAGAGTGTGCTCGTCACGCC 174201 28 100.0 32 ............................ TTTAAGCGTTACGCCAGTGTTATCAAAATGAA 174261 28 100.0 32 ............................ TTCCTGAATCAGAACTTTTTTTCTGATTAGAT 174321 28 100.0 32 ............................ GCCAGCAACACCGGCGACTACTCAGCCGCCAG 174381 28 100.0 32 ............................ ATGCAGAAATGTTGGTGTTCATGCCAACCTTG 174441 28 100.0 32 ............................ ACGTTTCGACCACAGCGCCAAGCCGCCAGAGA 174501 28 100.0 32 ............................ TACATGCTCGCTTACAACGAGGTTGTTGGTGA 174561 28 100.0 32 ............................ AGATATTCCGCCACATCCCCGGTTGTGGTGTC 174621 28 100.0 32 ............................ TAACATTGATTGTAATGGTCGCTTCCATGCTC 174681 28 100.0 32 ............................ CGCCTAATTCCGCGCCTGCTGAACGAGAATTA 174741 28 100.0 32 ............................ TCTCACCGATTGGGAGCGCGAGCAGGAACGCA 174801 28 92.9 32 ...........AG............... GGATAACCTCAGTGTCGGCGGCTCCCTCGACC 174861 28 92.9 33 ...........AG............... ATGTTAGACGCTCTATTGAGGTAAGAACAAAAT 174922 28 92.9 32 ...........AG............... AGTCAGGCATAGTTCACGCTCCACGTCTCGCC 174982 28 100.0 32 ............................ ACTGGGGCGCTTGGTCAAATCGACCACCTTGC 175042 28 100.0 32 ............................ ATCCGCTGACAACCGCAACACATTGCCCGCGC 175102 28 92.9 32 ...........AG............... GTAAAAAAAAAGTCCCTGACTCGGGGACCTCG 175162 27 78.6 0 ...........AG..........G.TG- | GG [175183] Deletion [175189] ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.7 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GTGACCGAGGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGTTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGACTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCTATCCGCGTAATAAAACGCAGACTAATAATTCATTGAAAAACACGTAATACACTGGAAAGTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTTAATACCCTTTTTTTCAGACGTCTTTTTCGATATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGAGTTAGAGTCAACAGGCTACA # Right flank : GGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTGATCACGCACGAAACCCTCCACCACACTACCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTCAGGGATATTCAGTCAAAACGACGTCCAATCACTATTGTTACCCGCCGCCGCCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //