Array 1 378027-379030 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDQ01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N43453 N43453_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 378027 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 378088 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 378149 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 378210 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 378271 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 378332 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 378393 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 378454 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 378515 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 378576 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 378637 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 378698 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 378759 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 378820 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 378881 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 378942 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 379003 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162626-160962 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDQ01000018.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N43453 N43453_contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162625 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 162564 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 162503 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 162442 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 162375 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 162314 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 162253 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 162192 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 162131 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162070 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162009 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161948 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161887 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161826 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161765 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 161704 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161643 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161582 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161521 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161418 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161357 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161296 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161235 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161174 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161113 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161052 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160991 29 96.6 0 A............................ | A [160964] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //