Array 1 78336-77514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOJ010000001.1 Streptomyces sp. MNP-20 scaffold1_size702336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78335 29 100.0 32 ............................. GAGATGATCGATTCCTGGAGGAGCTCGTTCGG 78274 29 100.0 32 ............................. CTGATCTACCGCCGTCAGGCGACGTGCGGCGC 78213 29 100.0 32 ............................. GTCTCGCCCAGGCGGCCGGTGCCCAGCAGCGA 78152 29 100.0 32 ............................. ACCGCTACACCCTCACCGACGGCCACGTCCAC 78091 29 100.0 32 ............................. AAGGCCTCATTTCAGGGGCGCGGGCGGGGGTC 78030 29 96.6 32 ...T......................... TCGACCACCCGCAAGAGGACCGCCGCGCGCCG 77969 29 100.0 32 ............................. CGCGCGGTGTCCGACTTGGGGCGGAAGAACAC 77908 29 96.6 32 ............................T TCGCCCGGCGCCGCCGCAGTGGGCAGACCCTG 77847 29 100.0 32 ............................. GACCAGCAGATGACCACGTACGGCATGACCCT 77786 29 100.0 32 ............................. GCCCCAGGCGACGAGACGCAACCTCAGCCTGG 77725 29 100.0 32 ............................. TGCCAGCGGGTGGTGGGCTTGCCGCCCCTGTC 77664 29 96.6 32 ...A......................... GCGGCGTCACCACCCTCACCGTGGGCGACTAC 77603 29 96.6 32 ..........T.................. CGGTCCAGGTTGGGGACGACCGGGACCTCGAT 77542 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTCCGCTCCGCGCCCGCGGAGGTGTCCCG # Left flank : TCATGCCGCGCATCGTCCGCGACCTCCAGAACCTCCTCGCCCCCACCACCTCCACTCCACCTGGCGAAGACCCCGACGAACAGCTTGTCGACCTGTGGGACCCCGTCACCGGACCCATCCCCGGCGGCACCAACCACGCCCCCACCTGACCGAAGGCACCGCGCATGGCCGCCATGACCGTCATCTCCGCCACCGCCGTTCCCGACCACCTCCGGGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCCACCCTCTACATCGGCACCATCTCCGCCCGGGTACGCACCGAACTATGGAAGAACCTCACCGAATGCCTCACCGACGGCAGCGCTGTACTCGCCTACCCAGCGGCCAACGAACAGGGCTTCACCCTCCACACGGCAGGCCCCCAACGCCGCGACCCCATCGACTTCGACGGCCTCACCCTCATTGCCTTCCAGCGCACCACCAACAGTCAAGCAATGGCAAACCCCTCCTAGACGCCCAGGCCAGGAAGG # Right flank : AAGCGCGGGCAGGACGAGCAGCAGCCGGGCACGTCCGCTCCGCGCCGCGGTGTCCCGCGAGGCGCACAGTCTGCGGAGTCGCCGTGAAGGCTCACGCTCAGCGAAATAGCGGGCCCACGCACACGTGCAGGCTCGTCTTGGCTGTCGCCTTACGGTGTGCGTGGCGCTCCGCGCGTGTAGTCAGGTGTTGCGGAGTGGATGGGGGCGCAGGCCCTTGCTGGGCGTGAGCCGGAGTGAGTTCGTGGGTTTTCATGCGACGGCGTATGGCGGATTGCGGCAGTTAGCTGTTGGCCGCGATCAGATGTGCTCTGAAGTGACCAACGTGCGGTCACCTGTATGCGGAGAATGTTCAACGGGAAGCCGATGCCAGTGATTTCGCACGCTGATGCGGCTGATTACCCGTTAGCGCCTCACTCTGATGGTCGAATGGAGTGGGTGGCCGCTATGGTCACGCCGAAGAGGCGGTCCCGGTCTCAGGCTGGCACCTATGACGGACCAGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCCCGCGGAGGTGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 88197-89137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOJ010000001.1 Streptomyces sp. MNP-20 scaffold1_size702336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88197 29 100.0 32 ............................. CGTTCGCAGGCGGTGACGACGTCGGCCGTCAC 88258 29 100.0 32 ............................. CTGCTGGAGATCGCCGCCGAGGCCACGGACAA 88319 29 100.0 32 ............................. CGTGTCGTGCGCTCGAAGAGCGGCCGTACGGC 88380 29 100.0 32 ............................. GCCGCCTCCAGGCGGGCCTTCAGCGACCGGGC 88441 29 100.0 32 ............................. TACTCGTCAGGTTCGCCGGTGGCCTGGCGCTG 88502 29 96.6 32 A............................ CTGCTGTTCGCCGGGTTCCTGACCGGGCTGCG 88563 29 100.0 32 ............................. TCCCCGCGCAGGGCCCGGGTGATGTTCCGGCG 88624 29 100.0 32 ............................. ACGTCCCGGTAGTGCAGGAGTTCGACCCCCGC 88685 29 100.0 32 ............................. CCTGCGCCGCGGTCGTCGGCATCGCGCCGTTC 88746 29 100.0 32 ............................. CCGGGCGGTGGGACCGGCGAATCCGGGTAGCG 88807 29 96.6 32 .C........................... GGGACGCTGGCGTGAGCGAGATGCCCACGACC 88868 27 89.7 32 .G......--................... ACTGCCGAACGCTGCTGTCCCGGATCGAACAG 88927 29 93.1 32 .......................C....T CCATCGCCACACACCTCGAGACCTACGCAGGA 88988 29 100.0 32 ............................. GCATCACGCACCGGCCGGGCCGGATACTCGAC 89049 29 93.1 32 ...G....T.................... TTGGCGATGATGCCGATCACCGCGGGGCCGAC 89110 28 86.2 0 ...........C............-G..T | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.2 32 GTCCTCTCCGCGCGAGCGGAGGTGTTCCG # Left flank : GCCCCGAACACCCCAGGCACCTGCGCCTGAAACGGCGGAATGATCTTCCCCAGATCATGCAGACCCGCCCAGAAAGCCACCACCACCCGCGCAGCCGCCTCATCCAGCCCCAGCTCAGCAGCAATCTCCCGCCGCTCCCCCGCCCCCAGCAGCGCATCCCACAACGCCTGGAACACAGCCGCCGTATCCAGCAAATGACAGACCACCGGATACGGAACGCCCAAGCCGCGCTCCTTGCCCCACAGCCGTACGTCGACTAACGCAGCATCCTTGCCTTCGCCCATGACGCCAGGTTCTAGCACCCCCCACTGACAACGCATCCCGACCTGCACTCCACCAAGCCCCCCGACGGCACAGACCCGATAGCCTCAACCGCACCACCACCGAAGCAAGGCCCAACCCACATGATCTCCAGGCGCGCATCAGCAGTAAGGACCGGCCCAAGCCCCGCGTACAGTAAAGGAATTACCAAGCCTCTCTAACACCGCAGGTGGCGAAGT # Right flank : TCAACAACCCCGGCGACTCCGCGCGTTGGATCGCATCACATTCGCGTGATCAGCGGCGTTTTGACGTTGCGCTCATCCGAGGCGCCGGAGCCGAAGCTCTCCCTGCCAACACAAGCCGAGAAGGTCCAGCCAAGGCCCGTGATCCGGACCAGTACCGGACCAGCTCAATGCCCGGCCAGAAGTCAGCCCTTTCCCTGCAGGCCAGAAGGGCTGCACATGGTGTACCACCAGCAGACCAAGAACCTCCTGGTGTCGTACTCGCCGAAGAAGCTCGGCTTCTTCTAGAGGCGCGAAGGAAGGCGCCTGACCTGGGCTTTGCCCGTCAGGCGCCTTCTCTCGACTCGGCCAGCACAGGGATCGATTTACGTCACAATTCTCATTTCCTCCCGCTCCTGCCCCGCGTCTGACCAGCTGCTCCGGACCAGTGGCGGACCAGAACCCGATCTCGCCGGCCAGGGCGAGCGCCCTCTGGTCGTCGGGCTCGAAGAGGTGGGCCAGGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 831-1405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOJ010000129.1 Streptomyces sp. MNP-20 scaffold127_size4522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================= ================== 831 29 100.0 32 ............................. GAGGCACTCCGCATGTACTCCCTGAGCCCCGG 892 29 100.0 32 ............................. TGGTCCCACAGCAGGCAGGCGAGCCCGCGGTG 953 29 100.0 32 ............................. AGGTGTCGACTCCCGAGGCCGCTCACCCAACC 1014 29 93.1 32 ......................C...A.. AGCTTGAGGGCCAGATGATCCAACACGACAAC 1075 29 75.9 151 A....GC......A...A..CA....... CCAGCGCAGACCCGATAGCCTCAAGACCACATCACCACCGAAGCCAAGCCCAACCCACATGACCCTCAGACACGCATCAGCAAGACCCCGTCCAAGCACCCCTCACAGTAAAGGAATTACCAAGCCCCTCTAACGCCGCAGGTGGCGGAGG 1255 29 82.8 32 .CC.......T.............T...T GATCCGGTCGTGCTTCCTCATGGTCAGCCCCT 1316 29 86.2 32 .CC.......T.............T.... AAGCCGTGTCCCTCGTGTGGGTGGTGACAGCG 1377 29 86.2 0 .CC.......T.............T.... | ========== ====== ====== ====== ============================= ======================================================================================================================================================= ================== 8 29 90.5 49 GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Left flank : GCTGTGTCAGGTTACAGCTCCAGGAGTTCCGGGTCCTCGGCAGTCGCAATGCGGGCGCCCTCGCCGTCGACGCGCCGTACGACTTCCCGTCCTGCGAAACGCACGATCAGGAGCACGAGGAACTGTCGCGGAAGAACAAGGAGCACAACAAACGGCCGGAAGGTGTCCGGCATTGACACAGCCGCCTTCGGATGACCTGTACGTTGGTGCGCGTGCGGGGCAGTCCCGAGCAGTCGTCGTACTCCCGCTCTTTGAAAAGGTGGTCCCCGCGTGTGCAGGGGCCGAACCAGTGGGATCTCCTTGAGATCACGCGGTCGACGTGGTCCACGCCCGGGCAGAGGCACGCTGACAAGCTGCGGCGGCTGTGGTGCTCGCTGCGGGAACCCGCCGACGCATCGCCGGGGTAGGACCACGAACTCCGCCCATGCCGACCGCACTTATGCACGTCACAACGAGGCAAAGAACCTGCAAAGCCGCCGCGACGCCCCAGGTCGCGCAGG # Right flank : GATGCCGTCGGCGCGGATCCTCTCCTTCCTCTGCGCCTTCTGCAGGGCCTTCTTGGTCGCGGGACCGAAGGCCATGTCGATACTGATCCTCGCCCCGTAGCAGCGGACGAGCCCGAGCTGCAGCGCGTGCACGCCCAGCATCCGGTGGCCCTGCTTGAGGATGCATTGGTGGTTGCCGGGAGCGATTCCCGGCCTGACCATGTGCCCGTCGTCCGTGCGCTGCTCTATCAAGTACTCGCACAGAGGAAGGCGTGCCGCCGTTCCCTCTGCCGGTGCTGCCTGCACGATCCGGGGCGTGGCCGCGGCCGAAGGTTCGGCGGCGGCCGTGGGCGCGACGAGGAGTCCAGCCCCCGAGAGCCACAGTGGTGGCGGCCAGGGGAAGTCGGATCTTCAACTGCACGTGTCCTCCAGTGATTTCAGCCGCCCGTCGTCTGTGACCGCACGGACGACCGGGCCTCGCTCAGGCACAGGCACGTTGCCGGTGAGGGACGTGTCCGCGC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-1.71, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGTCCG # Alternate repeat : GCCCTCTCCGTGCGAGCGGAGGTGTTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //