Array 1 66637-67804 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWQF01000019.1 Pseudomonas aeruginosa strain L31 L31_L1.R1.clean_(paired)_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66637 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 66697 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 66757 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 66817 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 66877 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 66937 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 66997 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 67057 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 67117 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 67177 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 67237 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 67297 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 67357 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 67417 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 67477 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 67537 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 67597 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 67657 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 67717 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 67777 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 78697-76329 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWQF01000019.1 Pseudomonas aeruginosa strain L31 L31_L1.R1.clean_(paired)_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 78696 28 100.0 32 ............................ TGAGCGAGGACATCAAGGAGGGCTACCGCCCC 78636 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 78576 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 78516 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 78456 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 78396 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 78336 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 78276 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 78216 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 78156 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 78096 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 78036 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 77976 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 77916 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 77856 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 77796 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 77736 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 77676 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 77616 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 77556 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 77496 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 77436 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 77376 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 77316 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 77256 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 77196 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 77136 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 77076 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 77016 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 76956 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 76896 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 76836 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 76776 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 76716 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 76656 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 76596 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 76536 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 76476 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 76416 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 76356 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //