Array 1 1349-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNY01000002.1 Thermogymnomonas acidicola strain JCM 13583 sequence2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1348 29 100.0 37 ............................. ATCGTGTCTTACTCACTCTATGTTTTATGATTAGCGA 1282 29 100.0 39 ............................. TACACTTCCTGATATATTTACAGTATTTCCAATGTTTAC 1214 29 100.0 37 ............................. CTGGAAAATCTACACTTTTAGGATATTTTATTAAAAA 1148 29 100.0 38 ............................. TGGGGTTATAGGACATCAGAACCTCACCTCGTACGTCT 1081 29 100.0 38 ............................. GGCTATATCCAATTCTAACGATGTATCACATATATTAA 1014 29 100.0 36 ............................. TATTCGATTTAGCCCCTTTTGTTAGATGTATAGGAG 949 29 100.0 40 ............................. ATAATATTTTTCACTCTCGTTCCTAATAACGAGACAAAAA 880 29 100.0 35 ............................. TTCTTTAAACCACCCCAATGATAGGTTGCAAATAC 816 29 100.0 36 ............................. ATCAATTATTATATTTCCTGATCCGTTTGCAATCGA 751 29 100.0 36 ............................. TGATGGAAATGAATATCGTCATGGACAAACAAAAGA 686 29 100.0 38 ............................. ATTTATTCCATTCCTCAGGACTATATTTATATTCAGAA 619 29 100.0 38 ............................. TAAATTGACCACAATAGATAGCTATCAGGTTCATGGAG 552 29 100.0 38 ............................. GGGATCAGCATCTCGACGCTAAATGGTATCATGAATTG 485 29 100.0 38 ............................. ATTTGATATTGATGGTAATATATTGCCGATCCAATTCC 418 29 100.0 36 ............................. TTGTCGTTTTCCGGTATCGTTCTGGATAGGTTTTAT 353 29 100.0 35 ............................. AGCCTCTTCTGTGCGATCTCCTTCGCCCGCTCCAT 289 29 100.0 35 ............................. TCGATTATAATGCAATTCATTTCCTCTTTTGCTAA 225 29 100.0 37 ............................. TCGTTCTCGCTTTCTAAAACAGGTGTGGATATCCAGG 159 29 100.0 34 ............................. GTCCTGGGACTACTGGTTAGCGGCGTTGCTACGG 96 29 100.0 37 ............................. CTTTTGCCGGTGCCGCTTCCCCCGCATATTAGGATGT 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 21 29 100.0 37 GTAAAATAGAACCTAAGTAGGATTGAAAG # Left flank : ACGGGCCTGTCGAGCCCGTGACATGGGTTCAAATCCCGTCCGGGGCGCTCAAACGATCGGCCTTTCAACCTAAGGCTTCTGTGGAGATATTCCTGTGTGGCATTGCGAAGTAATCTATTAATCGCTAAAGATATCACCACCATACTTATTGAAGTCAGAATTGTGTAGTTAGTTGAGAACTCGGACATTCCCGGTCAATGAAGTTGGGCCTGTATGAGTTAGAATCGTATATTTAGTTGAGAACCTAAGGGTTGAGAACCTATGAAATCACTTTGGCCTTACCTCTGTTGAAGGGATATCTCAATATGGCTTAAGGAGTTTATAAGAGAAATACTAGTTGCGCCTGAGCGGGTATGTCTTAAATGACTCTTTATCTGATATGGTATCGCTCAAGAAATGTACAGATCCTTTATATACTCACCCGAGAACCTCCGGTTATGTACGTTTTACGAACTTCGAAGCTAAGGATAATATAGTCAGTAACTGATCATCTTAGCCGG # Right flank : GA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTAAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 1135225-1134934 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNY01000001.1 Thermogymnomonas acidicola strain JCM 13583 sequence1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1135224 29 100.0 37 ............................. TCGAAAAGATGGAATGCCTTCCTAACGCGCCTGGCAA 1135158 29 96.6 37 ................T............ GAGGACTTCACGGACAATCCCAGGAACACAAAAATAT 1135092 29 100.0 37 ............................. TTCACCATGTCATCCTCGAACCACCTTTCTACGGAGG 1135026 29 96.6 35 ...........T................. TTTGAGGGCAATCGCGGACCTTTTGCCTCTCATGT 1134962 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.0 37 GTAAAATAGAACCTTAGTAGGATTGAAAG # Left flank : GGTTGAGAGGAGGGAACAATCACTCAAGGATCTCGGGGAAGAGAGCAACATATCCATATTCTCTTTCATCGATCTGAGGCCTTATTACAGCTACGTTTACCTTGACCATATGGACAAAATGATACTGAAGGCCATTGCTTCCGGCAGCCAGTCTAGTAACGAAATACTGAGATTTGTCCATAGATCCCTGGAGGAGCATTGGAGGATTTCCCTGAGGCTGATCCAGATGAGGCTGAACTCCCTTGAGCAAATGGGGCTCATAAGAAGTTATAGATCAGGAAAATCAAAGAATTACCTGGTATCTGATAACTTGACCAAGATCATAGACATCTCAGGTTTTCTCGGTACATAGAAAGCCAGGATAACATAATTCCCTTAGAATTCCAGAACCTGGTGCGCAGAAAGCCAAGATCTTTTCAGAACCCCCAGGGCACCCTAAGTAAGGATTCAAGGGTCTCGTGCCTAATTATGCTGAACTGATACGATTAATTTCAAAGATA # Right flank : ATAAGAAATAGATCTGCAAGCAGTAACGGGCCTAAAATATCGCTATTAGAATGGAGCCCCTGTGTGATTCAAGGTTCCAGGGAAAACGGGGAAAGCTGTCCAGGATTACCTTAAAAGGGACTCAGGAGAGACTGAAATTGACACCGCTTCATTTCAACAGATAGTGACTACCCCTGCACAGAACCCATGTCACCCAGATAACCCATGTCTATTATCCCGAACTCCTCAGATATCGAGAATATCCTGAACTTCTTCGGATCGACCTTCCTGAGGGCCGGGGTGAAGTGCTCCTCAGATATGAGGGACGTGAGCACGTCCGTGCCTGAGGAGTAGAAGCTCATTGATGGAGTGATTATGACTCCCTGCTCCGCATTGACCGGGAAGGCGGGCATCTTAAAGACTCCCCCTACTTTGTCCCTCAGCACCACCGATGGGTGCTCGTGGCCCAGGATCGTTATCTTCTTCAGGCCCCTGTCCCTGTCTCCGTGGTAGATGAAGTA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTTAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1151036-1145151 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNY01000001.1 Thermogymnomonas acidicola strain JCM 13583 sequence1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1151035 29 100.0 36 ............................. CTTTCGTCACCCTCGATATGTAGTTCATATCGTAGG 1150970 29 100.0 37 ............................. ACGGTCAGGAAGGCCAGCCAGGAAGGCCAGCCAGGAC 1150904 29 100.0 36 ............................. TTTGTATCTTATTCATTTCTTTTCACCTCCAATCAA 1150839 29 100.0 36 ............................. TCTGAAATCGTTGTACCAATGGTACATTTCATGAGA 1150774 29 100.0 38 ............................. AAGAATTGATTTAGCTCAAAAACACTTATAAGCGGCAA 1150707 29 100.0 35 ............................. ATCAGTCGGTCATTCAAAAGATGGCGTACCTCGGC 1150643 29 100.0 37 ............................. TGGAAGTTCAGGCGTCCCAACAAAAATAAAAAAAAAA 1150577 29 100.0 36 ............................. AAAACCGAATGGAAAAGAAAAAGGAACCGAATTGGG 1150512 29 100.0 38 ............................. TGGGTCCTCGAGGCGCAAGGGAACGGCTGGCCCCATAT 1150445 29 100.0 36 ............................. GTTCGGAAATTGGACAGTCCACGCCGCATTAGTCTC 1150380 29 100.0 38 ............................. GCCTGAAATGGTCCTTCTTCGATATGGCTATTCTGCGG 1150313 29 100.0 35 ............................. AGGAACGTCTCGGGACTGACAGGAACCTCAATCAA 1150249 29 100.0 38 ............................. GGGCCCTGCAGGGCATAACAGGAGGTCGAGGTCGACGA 1150182 29 100.0 36 ............................. CTTCTTCTGCCTTCATGGTCAGCGTCATGAGATCCA 1150117 29 100.0 38 ............................. CATAAGGTCTGTTCATAATTGGCGTTCCTGTGAGTAAG 1150050 29 100.0 35 ............................. TTTACATAGTTGCTTATGAAAGTAAGATTGTTCAA 1149986 29 100.0 38 ............................. TAAGCATGCCCGTCAGCTGTAACTGTTAGAGATAAGGA 1149919 29 100.0 37 ............................. TGGGTCTCCTCCTCTGACCTAGGGATTTCTCGAAGGC 1149853 29 100.0 37 ............................. GAGGTCGAGGAGCCCTCGGCATTGACGAAACCAAAGA 1149787 29 100.0 36 ............................. CAATTGTGCAATAATATACAGTTTTTTTATAAATTA 1149722 29 100.0 36 ............................. CATAGCCCGTCGTCACATAATTCGTGTATCCGAGGA 1149657 29 100.0 38 ............................. GACAAATTGCCCAAAATGATTAGAATTGAGACGATTAG 1149590 29 100.0 36 ............................. TAATTTCTGGCTCGCTTTCACTGTTGTCGTGGCTGC 1149525 29 100.0 37 ............................. TTAAACGAGGAGGAAAAGCAAAAATTTCCTAAAAGGA 1149459 29 100.0 35 ............................. TATTATAGGAGGGTGGTAAAATGTACGAATGTAAG 1149395 29 100.0 38 ............................. TTAAAAGCTGATGCAGGTGCAGAAACACCCCAAACTAT 1149328 29 100.0 35 ............................. TCGTTTATATACTGATCTCTGAGGTTTACATCTGT 1149264 29 100.0 35 ............................. CTCAGATATCGGCATGGGAGCAGAATCCATCGGAA 1149200 29 100.0 36 ............................. CACTCGGGGACTTCCCGAATAAGTGGAACACGTCGG 1149135 29 100.0 35 ............................. ATAATGAGGCCAATATTAACAACGATGTAAATGAT 1149071 29 100.0 38 ............................. TAAAGAAAAGTACTCTTTAGGCTCTATTGCCCCGCTGT 1149004 29 100.0 37 ............................. TATTCAGGTATTTCGATTTCTACATATGCATAACTAC 1148938 29 100.0 37 ............................. ATTGCATCCCAATCCGGTTCTATCTTTTCAATCTTGT 1148872 29 100.0 35 ............................. TCTATAACGAGGACGAGGTACTTAACGAGGCGCTT 1148808 29 100.0 34 ............................. ACCGTCACGCTCCAAGCGACCGCCGGTGCGCCTG 1148745 29 100.0 39 ............................. TTTGCCATACCATTTCAGACCGGCCCCTGCTAGGGCCAG 1148677 29 100.0 38 ............................. GAGAAGGGCCTTTCCGATCTCTTTCTCATCGAGGGCCT 1148610 29 100.0 37 ............................. TGCACGCCTGCACCCATGGATAAAAAGGTTTTCATTT 1148544 29 100.0 35 ............................. TTCTACTGATACTCTCTGCAAGTTCAAAAAGTGTA 1148480 29 100.0 36 ............................. GAATTTTATGCACGAATTGTAATTATGTGGTAGGCA 1148415 29 100.0 36 ............................. AAAACAATGAGGAATTACAGATCGATAGAGAGAAAA 1148350 29 100.0 37 ............................. AAAAGATAGGAAGGCATTTTCATAATGGTGATAAAAA 1148284 29 100.0 38 ............................. TGGGAAGCCGATACGAGAGGGGGCAATTTGCATCAGAT 1148217 29 100.0 37 ............................. GTACACTACTCATCAAACTCACCTTCTAGGTCTACGT 1148151 29 96.6 39 ........................C.... AAGAATTCCTAGGGAGCGGGCCTTCTCTATTATGGAGGG 1148083 29 100.0 36 ............................. ATCCTCCTTAGCCTCCTCGATCTCCTGTTTGATGTC 1148018 29 100.0 37 ............................. ACCATTATGACCACTTATTTTTATTGTGACGGGTCGA 1147952 29 100.0 36 ............................. AAGGAAAAAGAGGGGGTTGGGCCCGATCAATGGAGA 1147887 29 100.0 37 ............................. GACGAAGATTGAGCCCCATTTCCAGAAATGCTTGAGA 1147821 29 100.0 38 ............................. TGACTGTGTCAGCTTGACAACCAGATGGTCAGTTGCAG 1147754 29 100.0 36 ............................. AGAAGCGATCTGACCCTATTGTCTCCCTTTCTCCAT 1147689 29 100.0 37 ............................. CCATTTTTTATTTATATCTTTTGTCGCACACAGACGC 1147623 29 100.0 39 ............................. GAGGCCGTGCCAGAAATCTTGCGAGTCCTGTTCGAATAG 1147555 29 100.0 38 ............................. GGAACAATCGGCGCTCTCGATAATCGCTTTAATTTCTG 1147488 29 100.0 37 ............................. ATGGTCGCGTACACTGTCCCGCTGGCCCTGAGGCGAA 1147422 29 100.0 38 ............................. AAATTCGTCTTCGGCTTCGTCAATGCAACCGGATCGAG 1147355 29 100.0 35 ............................. ATCGATAAGAATGGCCATAAGATGAGAACCACGAT 1147291 29 100.0 36 ............................. GCTCGGCGAAGAAAAAATTTCGTCGTCCTCCCTCGA 1147226 29 100.0 38 ............................. TTCTATCGAGTCAGTCGAGAGAATATCGAGAGGATGCA 1147159 29 100.0 35 ............................. CCAAATGTCCTCCGAATCGACGGAAACGAGGGGGG 1147095 29 100.0 37 ............................. CTACGTCCAATCTTATGGACTTTGCCAATCCTATAGT 1147029 29 100.0 37 ............................. ATATTCGGGCTCTATTCCCTCGATGTAGGCCAGCATC 1146963 29 100.0 39 ............................. GAGGCCGTGCCAGAAATCTTGCGAGTCCTGTTCGAATAG 1146895 29 100.0 37 ............................. GGCTATTGATCGACCGGTTTTTTTCCTGTACAAATCG 1146829 29 100.0 38 ............................. AAATAGTGGGGGTCTCAATTTTTTATCGGATAGTTTGA 1146762 29 100.0 37 ............................. CCAACTATTCGATCCTCGTCGTTCCAGGTCAGTTTGG 1146696 29 100.0 36 ............................. AATGGTGCATGCTATTCCAACTGCCTGGGCGCAGGG 1146631 29 100.0 35 ............................. GTGACGGTCGATATCTTATCCAGATTGAAAATCAT 1146567 29 100.0 39 ............................. TGAGAAAATAATGTTAGCCCGCTCCATTGGATCGCAGTG 1146499 29 100.0 37 ............................. ATCCTATGGCCTCAATGACTTCCTCGACGACCTCCTC 1146433 29 100.0 38 ............................. TTTGCCATACCATTTCAGGGCTGCGCCCCCGAGGGCTG 1146366 29 100.0 36 ............................. CCATCTAATCCCGGATCTCCTAGAGGCCGGGGGTCT 1146301 29 100.0 39 ............................. CCCTTTTTCATCCCAGCCATGGGCATGTAGCAATTTTGG 1146233 29 100.0 38 ............................. CGAAATTCGTATTGGTGGTACGAAATTCGGAAAAAAGG 1146166 29 100.0 36 ............................. TAACATAATATTGAGACAACCCCAGCCAATCAAATT 1146101 29 100.0 36 ............................. GCTTTATCACACTTTTTGATGCAGGTGCAATCATGA 1146036 29 100.0 37 ............................. TAGAATTTCATGCCTCTGCCTCCGCTTCGTATTCTAT 1145970 29 100.0 34 ............................. TCTTATTCAGAGGAAAATGAGCCGCAATATGCAG 1145907 29 100.0 36 ............................. TTCCATACTGCATGCAGAAGGATTGCAAGTGCAATA 1145842 29 100.0 37 ............................. TTGGGGATGCCTCCCGGACAGCCGTACTGATCGCAGG 1145776 29 100.0 38 ............................. TTCTCAAAGAATCAAAAGAGAGATTCTGGAAGATAAAG 1145709 29 100.0 39 ............................. AAAAGTATCCGAAACTCCTTCATGCCCATGGCTGGGATG 1145641 29 100.0 37 ............................. GTTTCGTTCTGGGTTCTGGACTGGGTCGGTAAGAAAC 1145575 29 100.0 39 ............................. ATTTATACTGATACTGATAGCTTTTTTGTTGTTAACAAA 1145507 29 100.0 36 ............................. AGAAGGAGAAGTGGAAAGCTAAGATCCGGGGCCGAT 1145442 29 100.0 37 ............................. AATATGAACTTTAGGACCTCTTCCCACACAGGTGCAA 1145376 29 100.0 37 ............................. AAAAAAAATGGAAAAGAAGACGGCACACGACCAGATA 1145310 29 100.0 36 ............................. CCGGATGACACGGGCGGTAAGATCCTTATTGAGATA 1145245 29 100.0 37 ............................. GCAATAGGACATGTTCATTATTTGTCCATCGAATGAA 1145179 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 90 29 100.0 37 GTAAAATAGAACCTAAGTAGGATTGAAAG # Left flank : TAAAATAGAACCTAAGTAGGATTGAAAGGGAACAATCGGCGCTCTCGATAATCGCTTTAATTTCTGGTAAAATAGAACCTAAGTAGGATTGAAAGCCACCGTCGAGCGATACCTCGCCAGGCTTCATAGGGGTAAAATAGAACCTAAGTAGGATTGAAAGCATGGAGATGGCCGCAATCCTAAATATATTCGAATAGGTAAAATAGAACCTAAGTAGGATTGAAAGAAGCTAATATGATGAAAGGCATTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAAATAGAACCTAAGTAGGATTGAAAGATCCCGAAAAAAAGTTTGAATTACGCTTATATGGT # Right flank : CGCATTCATGCTCCAGTCTAGGAGTATGCTTGTTGGGCAGGAAAATAGAACTTGAAAAAGACTAGAGGAAATTGAGCTCCGGCCATCCTACAGTGAAGATCAAAAGTTCACACAGTGACATTTGACATTATCCATAGATGTTCTGCTCTAGGCATGGATTACTCCGTCTCATATCACGTTCTCATGTCTAACTCTGCTCTCGCCGATAGTTATCCTGCGCACCGTTTTCCTGCTCCTCAGGATAAATATATCGAGAACCTCGCTCTCTCTATCAATCTCACCCTTCAGTTTATCCAGCAGTATTCTCAGGTTTCCCAAAGTTATATCACCCATGAAAACAGAGTTCTGAATGTGTAAAAGGTAAGGTTTGCAGATCTTGGATATCCTCGCATCCTTTGAGGCATTGACATCATAGACAAGGACAACGAACATGCCTATCTCCTCGCAACGTAAGGTTTGTATGGTTCACCCTCAAGGATGTACCTCTCCAGCTTGTACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTAAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 3 1153755-1151310 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNY01000001.1 Thermogymnomonas acidicola strain JCM 13583 sequence1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1153754 29 100.0 36 ............................. ATGTGGAAATATAAATATTCCTATAAATTCAAAAGG 1153689 29 100.0 35 ............................. CCTGAATAAAAATCAGGTCGTCAATGACCCATTCG 1153625 29 100.0 38 ............................. TTCTCGTACAAGGGTGAGATGCGGGCAATCGTTTTTAG 1153558 29 100.0 38 ............................. GAACTCACCTGCATCCATCAGTAAGGCCTATTTATCGA 1153491 29 100.0 36 ............................. ATGGGCTTTATAAGGACACGTACACCGGCGACGAGT 1153426 29 100.0 35 ............................. AGAGTGTGGGTATGCTATAGATGCGGGTCGGAGGA 1153362 29 100.0 36 ............................. TTTCCAGTTAAAATCATAAACTATTTTGTTATCCAT 1153297 29 100.0 36 ............................. TAGTATAATCCATCCATGTATTGAGTTGTGGGTAAA 1153232 29 100.0 36 ............................. ATGCTGTGAATATATATCGGCTATCTGCTCGTCTGT 1153167 29 100.0 35 ............................. TTAAGCTGTTTTTTATCGATTTTATCGACCTCCAT 1153103 29 100.0 37 ............................. CCGTCTTCTCTCTGATACCCAGATACATATATTTTTC 1153037 29 100.0 36 ............................. GATTATGCTGGCACATTTTTGAAGGATACTGAAAAA 1152972 29 100.0 36 ............................. GTAGAGCCATTCGAGGAGGAGATTGAGATAAAGCTG 1152907 29 100.0 36 ............................. ATCCTGTAATTGTCCCGGAGACCCGGTAACGTCCGA 1152842 29 100.0 37 ............................. AATGCACAAGGGCAAAAAACCCTTTCGGTTCAATTCG 1152776 29 100.0 37 ............................. CTTTGCATCCACGGCGAGGATTTTGGCAGGCTATCCG 1152710 29 100.0 39 ............................. AACGCCGTGAGCGGCACCTATTCCTCCGCCGGTGCAGGA 1152642 29 100.0 37 ............................. ATCCTCCTTAGCCTCCTCAATCTCCTGTTTGATATCC 1152576 29 100.0 36 ............................. GAAAAGAAAAACGAGAGGAAAAAGAAGACAAGAGGA 1152511 29 100.0 37 ............................. AATTCTATTGCCCTTTTGAGAGATTTGTTTTTAGCTA 1152445 29 100.0 35 ............................. TGTTTATATTTCCCAAAAATGTATCTCGTAAGATA 1152381 29 100.0 38 ............................. GCAATCTTAGGTACATTAGTTGCTATTGCACCACCTAT 1152314 29 100.0 34 ............................. TCGCAGTGAAAAGGAAGTATATTTGAAAGAAGAA 1152251 29 100.0 37 ............................. GGGTGCAGTCGATCGAATGAATGAAAAATCGAAAAAG 1152185 29 100.0 36 ............................. TCGAGGGAATTGCCGGCCGGGACGAGGACGGGGGTG 1152120 29 100.0 36 ............................. TTGAAATAGTTAAAGGTATCTATAAAATGAATATTC 1152055 29 100.0 35 ............................. CAGGATTAGGACGAAAAAGAAATCAGTTGAGAGGT 1151991 29 100.0 35 ............................. GTAGGGCTTTCTTTTCCATTCGGGAAATTTCTTTC 1151927 29 100.0 35 ............................. TCATAAGACCACCCCCCAATTTAAAAAAATTTCAG 1151863 29 100.0 35 ............................. TGACTTCGTCCAGCAGTCCCGGCTATTCCTATATA 1151799 29 100.0 35 ............................. CTTAACGAGGCACTTTATTATTGGGGTGCAATTGA 1151735 29 100.0 38 ............................. ATTGGAGAACGGCCTAGGAATAATCTTAAGGTTGAGGG 1151668 29 100.0 37 ............................. CCATTTTTTATTTATATCTTTTGTCGCACACAGACGC 1151602 29 100.0 37 ............................. GGGCCTGCTTGCGTTGGCCGTTGCCAGCCTCATGGTA 1151536 29 100.0 38 ............................. GGAACAATCGGCGCTCTCGATAATCGCTTTAATTTCTG 1151469 29 100.0 36 ............................. CCACCGTCGAGCGATACCTCGCCAGGCTTCATAGGG 1151404 29 100.0 37 ............................. CATGGAGATGGCCGCAATCCTAAATATATTCGAATAG 1151338 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 38 29 100.0 36 GTAAAATAGAACCTAAGTAGGATTGAAAG # Left flank : | # Right flank : AAGCTAATATGATGAAAGGCATTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAAATAGAACCTAAGTAGGATTGAAAGATCCCGAAAAAAAGTTTGAATTACGCTTATATGGTGTAAAATAGAACCTAAGTAGGATTGAAAGCTTTCGTCACCCTCGATATGTAGTTCATATCGTAGGGTAAAATAGAACCTAAGTAGGATTGAAAGACGGTCAGGAAGGCCAGCCAGGAAGGCCAGCCAGGACGTAAAATAGAACCTAAGTAGGATTGAAAGTTTGTATCTTATTCATTTCTTTTCACCTCCAATCAAGTAAAATAGAACCTAAGTAGGATTGAAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTAAGTAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //