Array 1 1809-2160 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKM01000045.1 Phocaeicola sartorii JCM 17136 = DSM 21941 strain JCM 17136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1809 47 91.5 29 .....A...............GC.......................T GATATTGCCGTACAGCATGGTCAGAAACT 1885 47 100.0 30 ............................................... AAGGAGAGTAGAAGCCTCCTGAGCAGACAT 1962 47 100.0 29 ............................................... GTAAATGCCTGAGGGAGACTACGGGAAAT 2038 47 100.0 29 ............................................... GTGTAAATGAATTGCAGGCTGATATCTTA 2114 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 5 47 98.3 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : ACGAAAATAGCCCTTTCGCCTGCAAGCGTTTCAAGTGATGTTTGCCAAATTCAAGTATTTCAGCTCTGGTAATACACTTACTGAGCCTCATCAATATGATAAGCATGAATATATCTTCAAGTTTGTGTTTGAAATTTCCCCTGCTCGTTCTGCGGTATTCAGGGATTGAGGATACAAATATTTTCAAATGAATCATGAGGCTGCCACGAAGGCACTTAAAGTGTTTCTTTTTTAGTAGTATTATGTATAAAAAGTTGTATACCAATAAAATAAATCATATTTTTACTATTACAAGAACAAAGGAAGAAGACAATGCCAACATCATATTGCTATTAAATTCCGCCTATAAAAAATTAAAAAATAAACGATAAGAAGAAACACCTAAGGCGGTGCTTCAGTATCGCTGTGCGCGAATGTAAGGCTTTTTACAACAATAACAAGCGATGAACAATATTTCTTAAATGAAGCCGTGACCAACAAAGACATAAATCACGTCCATA # Right flank : CTGAATACATATTACAACCTAATTATCAATTAGTTAAGCATGTATTCAGAAATTAAAAACGAAATTGTTTTCTAATAAGAAATCCCGTTTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCCGGAGTAGTTACACCTTGTAATTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCACTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAACCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGCACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCTGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 9513-10008 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKM01000026.1 Phocaeicola sartorii JCM 17136 = DSM 21941 strain JCM 17136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9513 32 100.0 34 ................................ TATTACATAATCCATTAATGCTGCAGGTGCATAT 9579 32 100.0 34 ................................ TTCTTCCACCGAACCGGAAAATGAAGACATTAAC 9645 32 100.0 34 ................................ ATTTGTCAATAAAGACATATTGGGACCTAAGTTT 9711 32 100.0 35 ................................ AAAAGTTATGCGTTACGGTACCCAGGAGCAGGAGA 9778 32 100.0 34 ................................ AGTAACAATGTACTTAAATCATACAATGATGAAG 9844 32 100.0 35 ................................ ACCAACACGTCAGATATAACCGTAACGATGCCGGA 9911 32 96.9 33 .............................G.. GATGAATGCAGATAAGATACAAATTAGCATGGG 9976 32 75.0 0 ..T......T.....A.....C.A.C..GG.. | A [9997] ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.5 34 GTCGCACCTCATGTAGGTGCGTGGATTGAAAC # Left flank : GATGATTATCCGGTATTTATAATAAAATGATTTACAATTATGTACATTCTTGTGGCTTATGATGTGGATACTACGAGCAAAGAAGGGGCTCGTCGTTTACGGTGTGTGGCTAAAGCTTGTGTCGATTATGGACAAAGGGTACAGAACTCTGTCTTCGAGTGCGAGGTGACAGAAGCGCAATATTGTCTCTTGATAGAACGAATCAAGGATATTATTGATATGTCTCTTGACAGTGTTAGATTTTATATCCTCAGTAAAAACGAGAATAAAAGGGTCGAAGTGATAGGTGCTGAGACTGCTTATAAAGTTAATGATGCTCTTATTATATAATGTATGCGAATGTGGAGTATTGCAAAAAAGGTAGTATTTTCGCAATACTTAATAGTCAGTAGATTAGCTCGTTTATAAAGTCAGTCACTGTTATTAAGTTGAAATAAAAATAAAGATTCGCATGCAGATAGAGTTAATTCGTTGATTTATAATATGTTATTCGGTGTGGT # Right flank : CTGGATATTATTTATATTCTTATAGCTTTTCAATTTCTTCTTGAAACAATTCTGTAGCTTGTGAAATAATATCAATGGCTACTTCTGATTTTTTCAAGTTTTTTAGTCCTTTTTTCTACCTTTATTCAATCCCTTCTGCCCTTCCTTTTTCACGTTCAGTATTGATACTATCACGGAGAATAACAATGTTATCCAAGTGGCGGTAATAGCCGGCAAGCTTCTTCTTGGCCATGCTATCCAGTTTTAATCTCTCACGGGCCTCTCCAAGACCGGGGCTGTAGCAGTGGAAGGTATTTCTCGGTATTCAGGTAGTAGATCCATTCTTCCAGAGGGCTTCTGGCTACCTGATTGAAACCGTTCACTTTCAGGATATAGTATTCGGGATATAAGTCGCTGACCGTATCCGCCTTGAATGTCTGTTTCTGGAATAGGGTGAGTTCATGAAGATTATTAGTGTGGATTCCTGAATTCCGTCTTTCCATGATAAACGAAGTCCCTGC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATGTAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //