Array 1 7968-7358 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXSA01000062.1 Staphylococcus gallinarum strain SNUC 1169 contig062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 7967 36 100.0 36 .................................... GGAATTCTGAACACTTCAATTTCTTTCCCTTGTACT 7895 36 100.0 35 .................................... TTTGAATCTTGAATAACTGTTTGGGGAATACCACT 7824 36 100.0 35 .................................... TCACTCTTAATTTTGACAACTTTTGCAATTCTGCT 7753 36 100.0 36 .................................... GGAATTCTGAACACTTCAATTTCTTTCCCTTGTACT 7681 36 100.0 34 .................................... TCTTTCTTTCTATCATAGAGACATCTAATCTCAC 7611 36 100.0 37 .................................... AGTTTGTCATTTTTCATCACTCCATTTTAATTTTTAA 7538 36 100.0 36 .................................... GTTAATGTTTGCTTTCATGTTTATCAATTCCTTTTC 7466 36 100.0 38 .................................... TGAATTGCTACGTCCTTAACTGTGCTTTCTTCTTGTCC 7392 35 91.7 0 ...............................-..GT | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 99.1 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCAATTGGCGAAGGGGTGCTAGTTGTTTAGCATCGCAGAATTATATTTCGATAGTAAAAGGTTTGGTACATTATTATTTCACAGCCATCGATGACGAGGAAATACTTGATAAAATCTATGAAGAATTTATGAATGATGACTCCATCACAATAGTACTTAACAATGATTTTCAAGATATTATCAATCGCTACTTATCAAAATGAAGAGACATTACTTTTTAATAAACTAAGAGCATCCTTCACTTTGCGGTGAAGGATGCTCTAATGTTTATTTTTTGTTTAAAATTTAAAAAGAAATGAAAAGTTAAATTTATATTAATTTTATTATATGATTAAGCGAGATCATCTGAAGTGTAGTATACTATTAATACAAGAAAAGTTATTATAAAACTTGTCAAAAAATATGACATATCATATAGTAACAGACTATCAAGTGTCATATTTTTTGACAGCAAAAATGATACTTAAACTATGGTTGTCACGGCATTTGTTACAGTATCG # Right flank : GTATTTTTTTTATAAGCACTCTAAAAAATTTAAAAAAACTACATTGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTGGAAAATCATTACTTTGTCACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTCTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAGAAACATTCTCCACTAACTCAACTTATTTCCTCTTATGGAATGACACATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTAACAGGAAGAACTAGAGAGAGAATATGGAAGAAGATTGTTATAAATAAAATTATTAATCAAGCACGATGTCTTGAAAATAATTTGCATACAGGAAATGTTAAATTATTGTTAGAATTTTCAAAAGAAGTTAGTACAGGAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 3404-3648 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXSA01000079.1 Staphylococcus gallinarum strain SNUC 1169 contig079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 3404 37 100.0 35 ..................................... TTAGAAACTTTATTATTGATTATTGCTTTACCTAC 3476 37 100.0 33 ..................................... GTATTTCTTAATATTCATTATACTACTTTAAAA 3546 37 100.0 29 ..................................... AAATTCTCATTACATTTTTCATATACTTC 3612 37 97.3 0 ..................................T.. | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 99.3 33 TAATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Left flank : TTAACTGGGCAAACAGCAGGTGATATATTAAAAGATGTTGGAGTAAAGTTTGCACAAAATGTTGGAAAAGCCCAAATTAAAAGAATACCAGGAAGTGTACTAGTTAAAATTAATCAAAAAATAGGATTTAGATTAGTAACTAAATTTGGTGAAAAAGGATTAATTAATCTAGGAAAAATGGTTCCAGTTTTAGGCGGTGCAGTGGGAGCTTCATTTGACGTAGTTTCAACTAGAGCAATTGCAGAGATAGCTAAAAAAACTTTTGAGCCATTTGATCAAGATAATGATAGAGTAAGAATAATTATTAATTAGAGTTAAATTAATGACTGCTTTTTTATAGCGTAAGTAAAAAAATAGTCTATATATTTAGTTGTTGAAAAGAGGGATTAGTTTGTCAAAAAATATGACAAGAAGCACTTATAGCATGGTCAGTTTGTCACTATTTTTGACAGCAATTTTCACCTTTGAACTACTGATGTTATAGGCTTTAAAAAGCTATC # Right flank : CCTCATCTTGATGATCTCAATTGGCTTGGTTCAAAAGAAATCGATAACCTCCGTAGAATAGAGAATAAGTATTAAAAATATATTTGATTTGACAAAATATTCTGCAAAAAAAGGGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCATTTCTAAATAAGCAGAAACAAAAATAACGTTCATACAAATAATTTCTTTATGATTAAGTTAGAATTAGAAAATCAATGCGAAATACGAATAACAGCGAATGGAACGTATATTATTGAGAGATTGGATGCAGTGTATTGCAATTCGAGAGTTGCTACTTAAGAAATTAAAAAGAAGAAAACAAAAAATAGGAATTAAATTTGAAATAAGATATAAAACAAATATTTTTGTCATAATTAATTTAGTAAGTGCTTTATTATTTAGTAGGATAGGAACACATCAAACAAAAGCGGTTGAAAGTAAAGTAACGCCTAATAATACTACAAATA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [15,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //