Array 1 63326-62563 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUN01000006.1 Escherichia coli strain MOD1-EC6630 MOD1-EC6630_6_length_138273_cov_25.3074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 63325 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 63264 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 63203 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 63142 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 63081 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 63020 29 100.0 32 ............................. CCCCGCACACGTAAAGGCGTCGGCATGGATGC 62959 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 62898 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 62837 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 62774 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 62713 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 62652 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 62591 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCTTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTTAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79952-78825 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUN01000006.1 Escherichia coli strain MOD1-EC6630 MOD1-EC6630_6_length_138273_cov_25.3074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79951 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 79890 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 79829 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 79768 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 79707 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 79646 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 79585 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 79524 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 79463 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 79402 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 79341 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 79280 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 79219 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 79158 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 79097 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 79036 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 78975 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 78914 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 78853 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80260-79151 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUN01000025.1 Escherichia coli strain MOD1-EC6630 MOD1-EC6630_25_length_80515_cov_24.1151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80259 28 100.0 32 ............................ AGTAATTCCCCAATAATTCCCCGCGCAAAAAA 80199 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 80139 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 80079 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 80019 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 79959 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 79899 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 79839 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 79779 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 79719 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 79659 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 79599 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 79539 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 79479 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 79418 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 79358 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 79298 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 79238 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 79178 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAATCAGGAGAGCAGATTACCCCCTGGATCTGATTTCAGGCGTTGGGTGTGGATCACTATTGCACCGTTCGTGACATTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGGTTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCC # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45833-46702 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUN01000033.1 Escherichia coli strain MOD1-EC6630 MOD1-EC6630_33_length_55666_cov_23.3673, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45833 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 45893 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 45953 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 46013 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 46073 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 46133 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 46193 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 46253 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 46313 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 46373 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 46433 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 46493 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 46553 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 46613 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 46673 28 85.7 0 ....................A...C.CT | T,C [46693,46697] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //