Array 1 129858-127970 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHH01000072.1 Pseudomonas aeruginosa isolate 87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 129857 28 100.0 32 ............................ GTTCGCCGGATCGTTGATCCGACGAGCCGGGG 129797 28 100.0 32 ............................ TGTTCATCCTGGCAGCCGGCCCGATCTGGGGC 129737 28 100.0 32 ............................ AACAGCCTCCGCAAGGGAGGGAGGGGAAGCTT 129677 28 100.0 32 ............................ AAGGACTATTAAAGGCAGTGTTTCTTCGCTCA 129617 28 100.0 32 ............................ AGAAGCCCCGCCGCCAGATCGAGGAATATATT 129557 28 100.0 32 ............................ TCGACGCGGAGCTTGCAGCCATCGACGCGAAT 129497 28 100.0 32 ............................ ATTGCCGTTACCTCGAGCTTGTCGTCTATGGC 129437 28 100.0 32 ............................ GTCCCGGTATTTATCCAGGCCTGGGCGAGTAA 129377 28 100.0 32 ............................ AGTAACGGCCAGGTTCGCATCAATGCGCCGGA 129317 28 100.0 32 ............................ ACCCCAGATCGGAAAACGTCGCACCCCTTGCC 129257 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 129197 28 100.0 32 ............................ ACCGGCTGCGCCTGCTCAACAACCTTGGCAAC 129137 28 100.0 32 ............................ CGGATCGGACGGAGGTTCGTCCGGATCAGTCG 129077 28 100.0 32 ............................ TGCCGATCGCGCCGGAAGCGGTGAGCCAGTTC 129017 28 100.0 32 ............................ AGTCACAGGTCAGCCCGTCTTCGTAGAGATGG 128957 28 100.0 32 ............................ ACGCCAAATTCACCGCAGTAACTGCACGGACG 128897 28 100.0 32 ............................ GCGACCTGCTGTTGCAGAACGGTTTGACTTAC 128837 28 100.0 32 ............................ AGCACGTGGCGCATAAGCCGGCTCAGCAGCTC 128777 28 100.0 32 ............................ AGATTGCTGTGCGTCTGGTGTTCATAGCCCCG 128717 28 100.0 32 ............................ TCCGAAGAGGCTGCCTAGCCAGATTGCTGTGC 128657 28 100.0 32 ............................ CTGAGCTAACCCGGCTGGGCGTCTAAATCCTA 128597 28 100.0 32 ............................ TACAACTCCGAGGCCAACAACGAAATCGGCGC 128537 28 100.0 32 ............................ TTCGGCCGATCGGTCGCGAAAGGCCATGAGTG 128477 28 100.0 32 ............................ TTGCAGCCACCCTCAAGGCCTGTGCCGCCACC 128417 28 100.0 32 ............................ GTAACCCGGCGAGCGTGCGAGCCACCGTCAAG 128357 28 100.0 32 ............................ TACAGTCGAAGAAAGAAAAGCGCCCAAAACGC 128297 28 100.0 32 ............................ TGACTCAGCAGGTCCAGCGAGTCGATACCGGC 128237 28 100.0 32 ............................ GCGATCATCCCCGGAGTCGACGTCAATGCGGT 128177 28 100.0 32 ............................ ATCCGGCGCAATCGAGATGGAGCCATCGCAGG 128117 28 96.4 32 ......................C..... AGCTCCGGCACCCCGGCGCCCATTGCCAACAC 128057 28 100.0 32 ............................ CACTGGAGAACGGGCTTACCTTCCTTGTAGAG 127997 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 281-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHH01000062.1 Pseudomonas aeruginosa isolate 87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 281 28 100.0 32 ............................ TTCGGGATGATGAACCGGGCATGCGCGTTAGC 341 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 401 28 100.0 32 ............................ TGGCCCGCTGGTGGGCAACGGGTGCGACCACG 461 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGTCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGCATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTGGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9650-9016 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRHH01000062.1 Pseudomonas aeruginosa isolate 87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 9649 28 100.0 32 ............................ ATGCGGTTCTGCCACTCCAGCGGCATGGCTTC 9589 28 100.0 32 ............................ TCTTCGCGCATCGCCGGGGGCAGGACGCCAAG 9529 28 100.0 32 ............................ GGGAGCTAATCCGGTAGGGGATCACTAGCGGC 9469 28 100.0 32 ............................ TTCGAGCTAAGGCCCTTGGGGTCGCTACGAAC 9409 28 100.0 32 ............................ TTGGGTACAAATACCTTGGGTGATATCCCCTT 9349 28 100.0 32 ............................ TGAAGCGGCGCGTCGCCGGCACCAAGGTCTCG 9289 28 100.0 32 ............................ TCCCGCCGACGGGCTGTGTGTCGTGGAAACCG 9229 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 9169 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGT 9109 28 89.3 36 ...................TA.G..... AAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA C,C [9083,9086] 9043 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================== ================== 11 28 96.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //