Array 1 947935-948206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051315.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 35009 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 947935 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 947996 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 948057 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 948118 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 948179 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 958433-960599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051315.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 35009 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 958433 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 958494 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 958555 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 958616 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 958677 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 958738 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 958799 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 958860 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 958922 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 958983 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 959044 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 959105 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 959166 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 959227 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 959288 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 959349 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 959410 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 959471 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 959533 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 959594 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 959655 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 959716 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 959777 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 959838 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 959899 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 959960 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 960021 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 960082 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 960143 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 960204 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 960265 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 960326 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 960387 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 960448 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 960509 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 960570 29 93.1 0 .............C.A............. | A [960597] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //