Array 1 201369-201214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILF010000001.1 Clostridium botulinum strain SBPRU-0556 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 201368 26 100.0 39 .......................... AAATTAAATATGACAAAACAGCATCTATTTCTTTTCTTT 201303 26 100.0 38 .......................... AAATGCATATTGATTCCAGGCTATATCTTTAACTTCTA 201239 26 96.2 0 ...A...................... | ========== ====== ====== ====== ========================== ======================================= ================== 3 26 98.7 39 GTTGAACATTAACATGAGATGTATTT # Left flank : TTATGGAATTTACATCAAAGAAAGGTAATAAAATGAATATTATTGATAACACAAAAATAAGTAAAGGTAAATTTTATATTGTAATTTTGGATTCAAAATATAATATTATAGCTAAGAAAAATGAAACAAATCAAAATGGAAATATAAATTTTACTACACCTAAAGATGGAAAATATCTTATTAGAATCGTAGGTGCAAAGGCAAGTGGTAAATTTGATGTAAGCATAAATTCGGATAAAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAATAAAAAAGAATTCTAAAAGTTTTTCCAACCGCATTTAATTCTAAAGCCTATACTAAGCATTACAATATAAGGCTTAAGATAGGTTTTATTTATGTTTTTCTGAAAAATCATAAATGGTTGGGAAAATTTTTTTCAACCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATG # Right flank : CTTTATTTTGAAGAATTTGAGTTATTATAAGATATTATTTACAGCATATCACAATATTATAAGGGATAGATGGGATTGAGTTGTTTTTCTATAATGTAGTATTATTATAACAGCTTTTAAAGGTATTAAAATAAGAAATACTTTTAGAGAAGATAGATATCTAGAAAAATAATTAGAATACTTTATTTGTGATCTAATATTTAAGCGTGGAGTAAACAGGACGTTTACTTAGCTCTGTTGCCACAGGACGTGGCATTAGGGTGTTAGCTGAAATATTAAGACACAAATATTAGTATTCTTTATTTTTATAGCTATCTATTGACTAAAAGTATTTCTTGCTTTAATTCTTAACCTTTAAAAGCTTTTAAGCCGTAATTTCATTAGCATATGATTTAAGTATTTCTTTTGTTTTAGGAGATGCAAAAGATGCCTCTACTGCATTTAGATATAGTATTTTATAATCTTCTATAGACAAACCACAAAACTTATTAAGCATTTCT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 5110-5335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILF010000006.1 Clostridium botulinum strain SBPRU-0556 contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 5110 30 100.0 36 .............................. AAGAGGAGCAAACCGACATTGCAAAATATTAGACAC 5176 30 100.0 35 .............................. CTGTGCCTAAAGTCTTTTAGATATGTTCTTATTGA 5241 30 93.3 35 .............CT............... TTATTTAATGCTGAAGGAATGCTTGTTGCTGTATC 5306 30 90.0 0 .............C.......A.......T | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.8 36 ATTTAAATACATCTCATGTTATTGTTCAAC # Left flank : ATCATTAATACTACTTTTCTTTTAACCTTCATAATAAATTTAGTTATAACCCTTGATAAATCAATAAAGTTCTCTACCTTACTCTTTTGCTGCTCTAAATATTCAGATAGTGCTTCGTTATTAATTAAAAGAGAATCAGACATTATCTGTAAGAATTCTTTTGAAAATATTTTTTCATCTTCAAAAATCAAATCTCCAATTCCTTCAAAACTTATAGAAATAACCAAATAGTCTGTGAGCTTATTTAAATATCTCTCTAACATATATAGAGTAGTTGTTTTACCATACTGTCTTGGTCTATTTATAATAAAATATTCTTCATTATTTACTAATTTTAGTATACTATCTAGCTTATCGGATATATCCACCATATAATGCTTTTCTGGTATACAGGTTCCAGTTACATTAAATCTCTTTTCCATATAACTTTCACTCTCCTCACTCTATTATACTACCATAGAACAAACTGTTAATCTCAAACTTATAGAAATACAAAATAA # Right flank : TCATAGCAAAATAGCCATTCTTTAATTTTAAGAATATCATATAAGTTTTGAGTTTACAAGATTTCCAAAAAATTTTTCAACCGTTTATCATTTTTTCTAAAAACATAACAAAAACCTATCTTAAGCCTTATACTTCAATGCTTAAAATAGGTTTGGGAATTAGAATCGGTTGGGAAAAATTTTGGAGTTCTATTCTTATTTTTACTCATTCTTCATATATTATTCTAACAATAAACTTGTATTATTTTTTTATTATAGTTTATAACTATAAAGCCCGTATAATATTTTAATAAACTATCCCTTAATCATCTGTAAAAGTTATCATACTTGATAGAGGAAATATTAATGTAACTTTAGTTCCCTTATTTACCTCAGAGTCAATAGTAATTTTTAACCCCAATTTTGAACAAAGCTTTTCACATAGATATAAGCCTATCCCTGTACCTTTGCTAAATTTCCTTCCATTTTCACCGGTAAATCCTTTTTCAAAAACTCTATTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTATTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 78624-78923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILF010000010.1 Clostridium botulinum strain SBPRU-0556 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 78624 30 100.0 38 .............................. TACTTATTATATTAGTAAATAATGCATAAAGGAGTTGG 78692 30 100.0 36 .............................. AATAAGTTACGGTTTGAAAAATCTGTAATCAATTTT 78758 30 96.7 36 .............................C AAGTGGAAGTCCTTTCAATATTTTTTTAGTTGTTAA 78824 30 100.0 38 .............................. CACCTAATAATTTAGCTTCAAGAAGCTAAGACTTTCTA 78892 30 83.3 0 ............A.....ACT...A..... | G,G [78906,78909] ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.0 37 GTTTTATCTTAACTATATGGAATGTAAATT # Left flank : GTAACTATGAAGAAGGTCAAAGAGTTGAGCAAGATACATTTGTTTGTAAAAGATGTGGACATAAGATTAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTGATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAATATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATTCGAACATTCCATGATTAATGCGGTTATATACTCGTATTTTAATTTTTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGACATTTGAGTAAGTTCTATATATTACCCAAAAACACTACTGGAGATTTACTGCAGAATAAGGCAGATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGG # Right flank : TTAATATTTGTTTTTACAAAGCTAAATTTTAAAGAAGTTTAGCTTTATTTTTTAGGTAAAAAGCTATCGCACTAATTTTTTAGTGCGACAGCCCCATGATGATGGATAATTATAGAATTAATATACTATTGCAATAATAATATAACTATACTATAAGTAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTCTAGAAACAAATAAGAACATTTTTATTATATCTTTATTAATTAGCAAATTGCAGTTCCCCCTTTCTATTATTTTGGTTGATTTATTAGATTTTACTTAAATATGCTATAGCAAACAACGCTTTAGATGCTCTAGCTTGTCTGAGCTATTTTTATTTTGAACATAAAAAAGATTGTGCAAATTAAATTTAGATTAATAATAAATTTTTTTAACACGGTATATTAAAAGAATATATCGTGTTTTTTATTTTAAAAAAATGCTGTTATACGCCTAATACAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //