Array 1 164223-162483 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNU01000002.1 Salmonella enterica strain BCW_4925 NODE_2_length_419816_cov_2.74783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164222 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 164161 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 164100 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 164039 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 163978 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 163917 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 163856 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 163795 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 163734 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 163673 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 163612 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 163551 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 163490 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 163429 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 163368 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 163307 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 163246 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 163185 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 163123 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 163061 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 163000 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 162939 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 162878 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 162817 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 162756 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 162695 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 162634 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 162573 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 162512 29 100.0 0 ............................. | A [162485] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182701-180904 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNU01000002.1 Salmonella enterica strain BCW_4925 NODE_2_length_419816_cov_2.74783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182700 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 182639 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 182578 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 182517 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 182456 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 182395 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 182334 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 182273 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 182212 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 182151 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 182090 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 182029 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 181968 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 181907 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 181846 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 181785 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 181724 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 181663 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 181602 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 181541 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 181480 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 181419 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 181358 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 181297 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 181236 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 181175 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 181114 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 181053 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180992 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180931 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //