Array 1 470901-472514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXR01000016.1 Salmonella enterica subsp. enterica serovar Aqua str. NVSL2001 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470901 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 470962 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 471023 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 471084 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 471145 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 471206 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 471267 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 471328 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 471389 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 471450 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 471511 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 471572 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 471633 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 471694 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 471755 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 471816 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 471877 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 471938 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 471999 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 472060 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 472121 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 472182 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 472243 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 472304 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 472365 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 472426 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 472487 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 488647-489286 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUXR01000016.1 Salmonella enterica subsp. enterica serovar Aqua str. NVSL2001 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 488647 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 488708 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 488769 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 488830 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 488891 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 488952 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 489013 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 489074 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 489135 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 489196 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 489257 29 96.6 0 A............................ | A [489283] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //