Array 1 643740-643567 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 643739 37 83.8 33 NNNNNN............................... GCAGTGTTTTGGCCGTGTCAGCAATCACTATCG 643669 37 100.0 29 ..................................... CAGCAAAACCCTCTACTCGCTGCCTTTAC 643603 37 97.3 0 ....C................................ | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 93.7 32 CGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAAACGGCATGGTTGAGTATGAAGACAGTGTTACTGGTACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGAAAGTCACTTTCAAGCCGACGGAGTTTTTGAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACCGTTGTCTTATACCAACCACTGGAAGATTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTGATTCTCGCTTCCCAATTTCAGACGGCCTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTGCCGTCTGCTTTGCTTTGCACTGTCGTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTTTGAAACAAATTAATTTCGAATTAAAACAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTTGGTCAATGTTGGGAAAATGGCGGTGGAGTTTGCTCGGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTAAGGGAAATATTCGGAAGCCTTTAACCGCCAATTACATGGCAGCCCTTTAGTCGATCAAGCTATCGCCGGAGCC # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.00,-17.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 644324-643835 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 644323 33 97.0 33 N................................ CAATCGCCACGCAACATCATGACATTGCCCACG 644257 33 100.0 32 ................................. GGCATGGTTGAGTATGAAGACAGTGTTACTGG 644192 33 97.0 32 .A............................... TGAAAGTCACTTTCAAGCCGACGGAGTTTTTG 644127 33 93.9 32 AG............................... AACCGTTGTCTTATACCAACCACTGGAAGATT 644062 33 97.0 32 .T............................... GTGATTCTCGCTTCCCAATTTCAGACGGCCTG 643997 33 100.0 32 ................................. ATTGCCGTCTGCTTTGCTTTGCACTGTCGTGA 643932 33 100.0 32 ................................. CCTTTGAAACAAATTAATTTCGAATTAAAACA 643867 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================= ================== 8 33 97.7 32 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAACTCTTTAGGGGTTACGCTTTGGTAGAAGAGATGAGAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCGCGCCGACGTTGAAGCGTTGGTGAATCATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCCTTTATGGGCTATAAGTTGCTCACTGGCTTAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTAGCCAAGTATTGAGTAACGTCAGTAATATACCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTCGATAACCTCAGCACGAATACCGCCTTCAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGACTACGGCGAATATCCAAGTAGCCGAGAACGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGCTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAAACCCTCTACTCGCTGCCTTTACCGGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 645438-645210 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 645437 33 100.0 33 ................................. AGTTTAAGCAGTATCAGATTGATATGGCGCAGA 645371 33 93.9 31 TG............................... AATAATGTGAACACTTACTAGAAACAAAAGG 645307 33 97.0 32 A................................ CATAGTCCAAACGTTTGAGTTAATTAGAAACG 645242 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 97.7 32 GTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTGTTGAAACATGTGTCGTAATCTCCAAAAAGTTTTTTCAAATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCGACTTTTTCAGTTTTCGGACGCAGGTTGATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGACCAAATCGAGGCTGCCAAAACCAAATCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTTCTCGTTGGTTTTTTAGCCACGCTTTCTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCACCGGCGACCGCTACACCCTGCGCGAGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCTTTGAATTTGTCAAACTCGGCGCGCAGGGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATATGCGCGCGCAAGCCAGCCCTGCCATAAGTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATACGGAAAATTTCGACTCATGGTTATGGGAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTTGAGTACAGGTCATTATTTAACTCCCGTGCTACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCTACAAGGGCTTCGGTAATCAGTACCACCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTTTAGGGGTTACGCTTTGGTAGAAGAGATGAGAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCGCGCCGACGTTGAAGCGTTGGTGAATCATACAGCCG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 645959-645604 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 645958 33 93.9 32 NC............................... ATGTGTCGTAATCTCCAAAAAGTTTTTTCAAA 645893 33 97.0 32 .A............................... GCCGACTTTTTCAGTTTTCGGACGCAGGTTGA 645828 33 100.0 31 ................................. AAGACCAAATCGAGGCTGCCAAAACCAAATC 645764 33 93.9 31 AG............................... CTTTTCTCGTTGGTTTTTTAGCCACGCTTTC 645700 33 100.0 31 ................................. CCACCGGCGACCGCTACACCCTGCGCGAGCC 645636 33 93.9 0 GC............................... | ========== ====== ====== ====== ================================= ================================ ================== 6 33 96.4 32 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCAAAACCGCCGCGCCATATTCTTCGACGATGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGGATTTGTCGAAAACATCAAAAATTTATATAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAACGAAGCCATCAAACGCGCCTACATCGGCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCATAATTTGTCGTTTCGTCAAATTTCAGTAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCTTTGAATTTGTCAAACTCGGCGCGCAGGGCGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTTTAAGCAGTATCAGATTGATATGGCGCAGATGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATGTGAACACTTACTAGAAACAAAAGGATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATAGTCCAAACGTTTGAGTTAATTAGAAACGGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 646289-646057 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 646288 33 93.9 34 TG............................... TTGGATTTGTCGAAAACATCAAAAATTTATATAA 646221 33 97.0 33 G................................ TAAACGAAGCCATCAAACGCGCCTACATCGGCG 646155 33 100.0 33 ................................. GCATAATTTGTCGTTTCGTCAAATTTCAGTAAA 646089 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACGTCCATTCCCCAATCGGGGCGGCTTGTTTCGTAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTCTACCCATGGTGGCGGATAACGTCTGACTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATCGGTACGGAAACCCCATGTCACATCTCCAACTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAACAGGGCTTTTGTAGCCACTGCCGCGCCTACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGAAACTGTTGATGACTGCGCCGATTGGCCCCATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCAAAACCGCCGCGCCATATTCTTCGACGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATGTGTCGTAATCTCCAAAAAGTTTTTTCAAATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCGACTTTTTCAGTTTTCGGACGCAGGTTGATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGACCAAATCGAGGCTGCCAAAACCAAATCAGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTTCTCGTTGGTTTTTTAGCCACGCTTTCTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCACCGGCGACCGCTACACCCTGCGCGAGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 646877-646454 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 646876 33 97.0 31 G................................ GCTAAATCGGGCTTAAAGTAGCCGTCTGCCT 646812 33 97.0 32 .G............................... GTCCATTCCCCAATCGGGGCGGCTTGTTTCGT 646747 33 93.9 32 AA............................... GCTCTACCCATGGTGGCGGATAACGTCTGACT 646682 33 100.0 33 ................................. TATCGGTACGGAAACCCCATGTCACATCTCCAA 646616 33 97.0 32 C................................ AACAACAGGGCTTTTGTAGCCACTGCCGCGCC 646551 33 97.0 32 .A............................... TGAAACTGTTGATGACTGCGCCGATTGGCCCC 646486 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================= ================== 7 33 97.0 32 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTGTTGAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGACATAAGGCCATGCGGTCGGAGGTGTCTTTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGCCAAGGGTACTCACGTTATGAGTACCCTTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCCGTCGCCTCTTGGTTTTTGATGTAACCAATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCGTCCTGCGTTCTTTTTGAGAATTAGCGC # Right flank : AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCAAAACCGCCGCGCCATATTCTTCGACGATGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGGATTTGTCGAAAACATCAAAAATTTATATAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTAAACGAAGCCATCAAACGCGCCTACATCGGCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCATAATTTGTCGTTTCGTCAAATTTCAGTAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 647266-647039 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 647265 33 87.9 32 NNNN............................. AAGACATAAGGCCATGCGGTCGGAGGTGTCTT 647200 33 97.0 32 .G............................... CCGCCAAGGGTACTCACGTTATGAGTACCCTT 647135 33 100.0 31 ................................. AGCCGTCGCCTCTTGGTTTTTGATGTAACCA 647071 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================ ================== 4 33 95.5 32 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATATCAATTTCCGCTTCAAACGGTAAAGGGATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGCTTTGTCATATACTCGCGCATAACATGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGTCGGCTCTACTTGCCAGCGTTGAGATAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTTACCGCCTAGATAGGCGGTTTTCTTTTGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCGTCCTGCGTTCTTTTTGAGAATTAGCGCGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTAAATCGGGCTTAAAGTAGCCGTCTGCCTTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCCATTCCCCAATCGGGGCGGCTTGTTTCGTAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTCTACCCATGGTGGCGGATAACGTCTGACTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATCGGTACGGAAACCCCATGTCACATCTCCAACTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACAACAGGGCTTTTGTAGCCACTGCCGCGCCTACAGCCGCCTTC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 647592-647364 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 647591 33 93.9 32 TA............................... TTTTGCTTTGTCATATACTCGCGCATAACATG 647526 33 97.0 32 A................................ GGGTCGGCTCTACTTGCCAGCGTTGAGATAAA 647461 33 100.0 32 ................................. ACATTTACCGCCTAGATAGGCGGTTTTCTTTT 647396 33 97.0 0 .T............................... | ========== ====== ====== ====== ================================= ================================ ================== 4 33 97.0 32 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACTTGTTGTGTTTCGCGGTTGTATTCTTTAACCTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGCCCCAGAAACGCCTAAAGAAGTAAAAGCAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCCAAACTATCACAATAAGCGAACGTGGTTCAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGCGATTGCCGAAGAATACTTTGCGACCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCCCGTCAAATTGCGGATGGCTATTGATAATTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATATCAATTTCCGCTTCAAACGGTAAAGGGA # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAGACATAAGGCCATGCGGTCGGAGGTGTCTTTGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGCCAAGGGTACTCACGTTATGAGTACCCTTTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCCGTCGCCTCTTGGTTTTTGATGTAACCAATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCGTCCTGCGTTCTTTTTGAGAATTAGCGCGTCAGCCGCCTTC # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 648114-647755 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 648113 33 93.9 31 NN............................... TTGTTGTGTTTCGCGGTTGTATTCTTTAACC 648049 33 93.9 33 TG............................... AAGCCCCAGAAACGCCTAAAGAAGTAAAAGCAG 647983 33 100.0 33 ................................. GCCAAACTATCACAATAAGCGAACGTGGTTCAA 647917 33 100.0 32 ................................. AGGCGATTGCCGAAGAATACTTTGCGACCAAG 647852 33 100.0 32 ................................. CATCCCGTCAAATTGCGGATGGCTATTGATAA 647787 33 93.9 0 TT............................... | ========== ====== ====== ====== ================================= ================================= ================== 6 33 97.0 32 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAACTCGGGGTGTTTGTACTGCCGATGACTGCCTCGGGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGAAGAGAAAGAAAGGATTCGATATGTGCAAGTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCATTGGTTTGCCAGTTCGTCGATTTTGCTTACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTGGGGATATTTATCATATTGATGGTGCAGAATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGAGAAACGTCATCCACCTGTTCTCTAATGCAGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAAATCAGGCTTAAAGTAGCCTTCCGCTTTGGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATATCAATTTCCGCTTCAAACGGTAAAGGGATACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGCTTTGTCATATACTCGCGCATAACATGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGTCGGCTCTACTTGCCAGCGTTGAGATAAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTTACCGCCTAGATAGGCGGTTTTCTTTTGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 649107-648810 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803559.1 Neisseria sp. HMSC075C12 Scaffold348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 649106 33 97.0 32 .A............................... AGAAACACGACAATGGCTATAATTTTTGCCAA 649041 33 97.0 32 .T............................... TCCTTTTCGATTCCAAGCTTTTTTGCGTTTTC 648976 33 100.0 35 ................................. TGCCTGTACGTTTTCAAAAGTGGCTTTTCGGTACT 648908 33 100.0 33 ................................. GCCGTTATCGTCGCCAGCGGTGGCAGAATCGCC 648842 33 93.9 0 TT............................... | ========== ====== ====== ====== ================================= =================================== ================== 5 33 97.6 33 GGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGGCTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGTTTGCATATCATTGTGATAAAGATGGTCGCTT # Right flank : TGCACGTTGTATCGCTCGAAAGCCTTTTTAATAAACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGGGGTGTTTGTACTGCCGATGACTGCCTCGGGTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGGAAGAGAAAGAAAGGATTCGATATGTGCAAGTTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCATTGGTTTGCCAGTTCGTCGATTTTGCTTACTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACTGGGGATATTTATCATATTGATGGTGCAGAATCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGAGAAACGTCATCCACCTGTTCTCTAATGCAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //