Array 1 500-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHLY010000020.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_1948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 499 28 100.0 32 ............................ TCAATCAGCGCCATATCAGCCTTACTCACGAT 439 28 100.0 32 ............................ AGTAACCGCAACCTCTTCTTCCAGAAATTCAA 379 28 100.0 32 ............................ ATGCGCAGCAATGGAATTTTTGCGATTTCACC 319 28 100.0 32 ............................ TCTCGGATGGCAGCTTTCAGAACTCCAGCGTT 259 28 100.0 32 ............................ TGATCAATCGCTTTCGGCAATTCAACAACCAA 199 28 100.0 32 ............................ GTCTTCCGGCATATCCGGTTCATCAACGTAGC 139 28 100.0 33 ............................ TCGCTGACCGCTTATTGTGCTTTGATGAATGCA 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAATATTGGCAGGCGTATGAAAACGAAGAGCTGATACTTTCTCCGATGCCCGGCGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGACCGCCATCGGCGTTGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCCACGTCCAACGAATGCTAAAACGGTCGCCGCATTGCTGCTGATCGCGCTTTATCTGGCATTCCCTCTACACCTCTACCTACGCGAACCGCTCCCCTACTGCGCCTTTAGCCCCAGCGGTCAGCAGTTAACGGTGTGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGCTTCTTCTCAACCCTTTTTTAACGATTAGTCGTAACTTACTGATTTTTAACCACCAAAAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAAACAGAGTATTCTCTTTAATAATCTGATGATTAGCATGAAATTTTTACG # Right flank : AGACTACGCGCCGAGGCCATGCAGTCAGGCATTGTTCACTGCCGTATAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7134-6506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHLY010000022.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_1948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7133 28 100.0 32 ............................ AAAGGCCGTCGCGAGTTGCCGACGCACAGCGC 7073 28 100.0 32 ............................ ATGACTGTTGGCACAGTTGACACATCGTACTG 7013 28 100.0 32 ............................ TGAAATGATTAAAGGATTTCGAGTAGCTGTAA 6953 28 100.0 32 ............................ ACATCACCGAACGTGAGATAGTCGAACGTCGC 6893 28 100.0 32 ............................ GAGCTGAAAGAGCAGCTTGCCGGACAGGATGG 6833 28 100.0 32 ............................ TCACGATCAGCAAATCCATCTCCGCGCCTTTC 6773 28 100.0 32 ............................ AGCTTAAGGTAACGCGAAAACTGCTGCCGATG 6713 28 100.0 32 ............................ GCATGAAGCTGGTTGCCAATGGCACCCGTTTT 6653 28 96.4 32 ...........C................ GTTGGGCAGTAATGTGTTTAGTGCGCTTTCTC 6593 28 92.9 32 ...........C.....T.......... TTAACGGTATTTATGCGGATCGAGATAAATCT 6533 28 75.0 0 ...........C.C......T...TCCG | ========== ====== ====== ====== ============================ ================================ ================== 11 28 96.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCGAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAACTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCCAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACGAAAGGGCAGAAAAAAAGGGTTTTTGCGACGAAAATGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : CGACATTAAGCGCTATTGTCTGGCTATTATCGAAGTAGCACTGCGCCAAGTGCTCAATGCGTTTACCCCTTAAATAATGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGCTTCTTCTTAAGGGAATGAAAAATTGCGGGTTGGGCATTATTGACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAGATACGATCCCGTTTTAAAAACGTTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAAACGTTATGCACACCAAACCCTAATGAATCTTGGAAAACGGCAATATTTGGCTGTACCGACCCCATC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 16091-16779 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHLY010000022.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_1948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16091 28 96.4 32 .................A.......... AGCGAGGCCGCAGAAATGATTACTGTGCGCCG 16151 28 100.0 32 ............................ TTGTTCGCTATTGCCTGCGCACGCAATTTATC 16211 28 100.0 32 ............................ CTCATCAAGCATACTTTCGTTTTCTTTCGTCA 16271 28 100.0 32 ............................ ATCAGAAACTGCATACCAGGCTGCGCTACTTT 16331 28 100.0 32 ............................ CCCCGTCCTGCTAAGCAATAACGGGCTTTCAG 16391 28 92.9 32 ...........G......T......... AGCGGAAAATCTGCTGCCTGTTGTTATTTATC 16451 28 96.4 32 ...........C................ AGGATGGCTTGATGGCCCCCTGATTCGCTGGC 16511 28 100.0 32 ............................ TTGTGGTGAGACAGGTAGCAATTACGCGACGT 16571 28 100.0 32 ............................ CTTGCGTTTCGCCCAGGCTTCCCCGTCCGGTG 16631 28 96.4 32 .................T.......... AGCGTTTCGATCAGCTACTGCGGAGTGTTCGG 16691 28 96.4 32 ...........C................ TAACAAAGAACACCGCGACGAAAGTGATCGGT 16751 28 85.7 0 ...........CGC..........C... | A [16774] ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTAAAGAGCAGCGCTGAACGGTTGCGCCGACGCTCAGTCAGCAAAGGCTGGCTGACTGAAGCAGAAGCCTCAGCACGGATTCCCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGCCAGATGTTTTTCGTGTTTGTGGAACATGGTCCACTACAGGACGCGCCTATAGCAGGACGTTTCTCTTCCTACGGTTTAAGCGCGGAAGCCACCGTCCCCTGGTTCTGACCCTTTTCTGGCGACCGGCTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCAACAAAAAAAGCCATATTCTCTTTAACAATCTGGTGGTTAGATTAAAAGCCTAACC # Right flank : ATATCAGGACTTGCACTTCGCCAGACATCATCCGGTCAGACTGACCGATTATTTAACCCAATCTTCCAACGTCAGCCCCTGCACTCTTTCAAACTCTCTCAGATTATTGGTGACCAATATGGCCTCAGCGCTGATGGCATGGCCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAGCGCAATTTTGATTTTCGTTGTGGCGTCTACCGCAGCACTATCCCAAGGTAACACCGCATCGAGCCGACGACAGAAAGCATCAACTAGTTGCATATGGCGTGGCAAAGCTTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATAGCAGAGACCACGATCCGGTCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCACCGCTGTCGGGTGTTCACGCATAATGAAGGAACAGATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTATATCCTGACG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 18321-17869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHLY010000022.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_1948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18320 27 85.7 32 T.........T-..G............. AGGCGAACACATCAACAAACGCCCCGCTCGCG C,GA,T [18303,18314,18317] 18257 28 100.0 32 ............................ CAATTCTGACACTCGTTAAACGTCATAATGCG 18197 28 100.0 32 ............................ GGCGGAGTCGTTGCTGGCCGGGTTGGCGGCTT 18137 28 100.0 33 ............................ CTCGATTAGTACGCGTTCCGTTAATGTACTCTC 18076 28 100.0 32 ............................ ACCTGAATAACCGCGATCGTGTAGCCCTTCCA 18016 28 100.0 32 ............................ GTCAGAGGGCGCAATGGTAGCCGCTTATTACG 17956 28 96.4 32 ..........A................. AAGCTCGGTTTGCCAATCGCATCTGTGATTTA 17896 28 78.6 0 ....................TGA.C.CG | ========== ====== ====== ====== ============================ ================================= ================== 8 28 95.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGGCGCTAACGATTAACGAGAATGCCGACCCCACAGTGCGGCAGGATTTCGAGAGTTTCTTTAATCGTTTAGTGCCGGAGAATGAACCGTACTACCGTCATACTTATGAAGGTAGCGACGACATGCCCGCGCATCTGAAAGGCAGCCTGCTCGGCAACAGCCTGACGATTCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAAGGCATCTACCTGTGCGAACATCGCAACCACGGCGGCAGTCGCTCGCTGGTTGTCACGCTCAACGGGGAATAGTTTCACGATATGCGTCGCGCTAGCGACGCACCCCGATAAGCATCTAGCTGCCTGCACGGCAGTGAACGCAAATCATGCATCACGACGTTCTCTGGGCATTTTCTAAGCTGCCTGTGCGGCAGTGAACAAGAAGCACAGCATTCAGGTCATGTTCCGCCATTTCTAAGCTGCCTATGCGGCAGTGAACCCTGACTGGTCTAGGTTGCTGGTATGCCTGCA # Right flank : CCAGCCAACCATCTGGAATGGTAGCCAGCTTTCTAAGCTGCCTATGCGGCAGTGAACATGATGTTCTGCAATCGGTATTCGGCGGTACAGGTTTCTAAGCTGCCTATGCGGCAGTGAACCGTTCATATTTTACGGTAGTTGCCTAATTTTAAAAGGAAATAAACCATTTTTCCCGAAAAACCATTTTTTATCAGAGTCGATAATCGAAATTAAAAATCAATGAGTTACGGTGATGCGTAAAAAAAGGGTCATGAACATATGTCGATAGGCCTATGCTAGGTATCTGCATATGCTATGAATATACAATCGAGTGATTAATACCTATACTTAGCTTATGTTTTAGCCAGCAATAATAAATGGTAAGTGGCTGGCTGAATTTTATATGAAGGAGGAGGTGCATCATGCGTATTGTTTCGGTATTTAAAAACGGTAACAACCGTGCCATTCGCTTGCCGCGTGATATGGACTTTGAAGGGGTCAACGAACTGGAGATCGTGCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 447101-445380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHLY010000004.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_1948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 447100 29 100.0 32 ............................. GCTGCCGCGCTGGTATTGCGCACGCCTGCGGT 447039 29 100.0 32 ............................. ATATCTTCTGTTTGTTATTCATTTTCTTTTTT 446978 29 100.0 32 ............................. GCGCGGCTCTTCCTCACCAGCCATTATCTCGT 446917 29 100.0 32 ............................. AGGGAATTATCCTGTTCGGAAACAACGTCCCT 446856 29 100.0 32 ............................. TGGGATAAAGACGAAAACGGCGATGGGTTACC 446795 29 100.0 32 ............................. ATACGCCGTCATCATGTTGTGCAGCATCGAAC 446734 29 100.0 32 ............................. CGCAACGGCGTTAAGTTCTGGCTGACGTTCCT 446673 29 100.0 32 ............................. CCTCGAATTCAGATGAAATCAGCTATGCAGCG 446612 29 100.0 33 ............................. CGCTGCTGGACGCGCTGACTACCGGACGTAACC 446550 29 100.0 32 ............................. TCTTCAAACTCCAGCGTCACTTCGGTTGCGAC 446489 29 100.0 32 ............................. TCGGGGCGAGTATCCGGCGTGACGGCATGCCA 446428 29 100.0 33 ............................. TTGCTTATATAAATAAAAATAACAGCTACGAAA 446366 29 100.0 32 ............................. AGGCGATAGAGCTTATCGCTAACGTGGAGGGT 446305 29 100.0 32 ............................. TTCTGCAAGCCGGAATTCGTAATCACCATCCC 446244 29 100.0 32 ............................. CGTAACAATAGGTAACGGCGCTGATGTGGTGC 446183 29 100.0 32 ............................. GGGAATTCAATTCATCATAGCGCCTTTTTCTC 446122 29 100.0 32 ............................. CTCGGGGTGAGACCGTTTATGTCTTTCTGCGA 446061 29 100.0 32 ............................. AATGAATTCAGGAGAGCATTGCAGCTCGCGAG 446000 29 100.0 32 ............................. CCTTTTCCTGCATAGAGTGGCGCACCGCTGCC 445939 29 100.0 33 ............................. CGAGGATGATATGCCCAATACACCGGACTGGGG 445877 29 100.0 32 ............................. ATACCTGAATTTTTGAAAGCGGGATTCGTTAG 445816 29 100.0 32 ............................. GCGCTGCTTAGTTGATGGGAAATAATCACAAT 445755 29 100.0 32 ............................. GATTTTATTGTTGTACCGGATGAGGAATTAAT 445694 29 93.1 32 ............T...............T GGCGAGTGTAATTATCTGGCTCATGAATCATG 445633 29 96.6 32 .A........................... CGGGCAGGGCATCGCAGTAATCACTAGTGCAT 445572 29 96.6 32 .A........................... ATTTTCCAGTAGCCGCTCGGGATTTGGACCGT 445511 29 93.1 74 ............TT............... GGCGGGGAGACGGCGACGCATAAAGTCAAATAGTGTTCCCCGTGCCAGCGCAACGAGTCGTATCGCTATTCGAG 445408 29 93.1 0 ............T..............T. | ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.0 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTTATTGTTTAGCCTGCTAATTATTCATTGATTTACTTCATGATGACAGATGTCTATTGATTGTTCCCCAGTGTATGTCAATATGCTTGTAATCATTGGAAATAGCGGATAAAAAAGCCATTCAATTTTATAGGTTACATTGAAATTCGGTTGCGAAAGAATATTTTTATATGGGTTTTTTACCGAAAAATAAAAGTGTAGTGGTATATCTTTGCTGCATCGCGCAGCGTTTAATTTAGTAACTGAGCGTTTTTTCAGATGCCTGACCAAGCTGGCAGGGGCAGAGCAATATGATGATGTGGTCGACGAATACGGAATCCTGTTTTGAGTTCTAAACTTGGGGTGAAAACCGCTGAATGTCGGTAGATTGGATGACCTGTAGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGACCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCTAAAAAAGTATTATAAAACAACTCTCTATCTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATACCCCCTGCACGAGTCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCCGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAAGCAGGCAGCGGTACCGTTCCTGCTGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCAGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTTAGCAGCGGGCGGTTGGGGCGTGAAGAAGGCTCCGCGCTGTTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 451120-449301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHLY010000004.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_1948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 451119 29 100.0 32 ............................. CGCAAGCGCCTGCGCTTTTGACTCCAGTTTCG 451058 29 100.0 32 ............................. GCCATTCAGCGTGTGCCCACGCAGCGCCTTCA 450997 29 100.0 32 ............................. AGATGCCATCTGTAGCTCAATGGATTCTGTGG 450936 29 100.0 32 ............................. GAACGGAAAGGCATTCGTTTTTCGAGCTGATG 450875 29 100.0 32 ............................. GCGCATCAGCGTGCGCAGCGTTCCCGGCTCCA 450814 29 100.0 32 ............................. CTGCTGACGGAAAAATACATCGTCGAATACAT 450753 29 100.0 32 ............................. CAGCGGCTGGCGTTAAGGGCTTTATTCTGGCT 450692 29 100.0 32 ............................. CATGCTCGGATTCATCATCATCGTTGTCGTTG 450631 29 100.0 32 ............................. CTCATACCAGAGAATCAGCTGACCGTCTTTAA 450570 29 100.0 32 ............................. GACATTAACGCCGCTACAGGCAAGCAGATGGC 450509 29 100.0 32 ............................. CTATGGATGAATTACCCTGAAGGTGCGGCGTA 450448 29 100.0 32 ............................. TAACCATCCCGCTATTTGGTCCAGAATATATC 450387 29 100.0 32 ............................. GCGGTTCGCTCGCTGGCCACCGCAATGGAGAA 450326 29 100.0 32 ............................. TAAACAGCATCCTCTGTACCCTCACTGATGCT 450265 29 100.0 32 ............................. CTGGAGGACGTGACGGCTATTGAGCGCCTTGG 450204 29 100.0 32 ............................. AATGCGCTGGTCAACACCGTGATGAAAAACCT 450143 29 100.0 32 ............................. TTATAGGGAAAATAAAGCCCAATAATGCCCAA 450082 29 100.0 32 ............................. CTTGAATCCCAGCCTAACGCCGATAACCCGTC 450021 29 100.0 52 ............................. TGAACGCGCCCGCAATACCGGATCAGGGATCAGGGAAAGGAAAGGAAGAGGA 449940 29 100.0 32 ............................. TCCGTTATCGTCTTTGGTTACACCGTTAAACT 449879 29 100.0 32 ............................. GTAGGAAAGACAAGGGAATTTCGTGGCTGGGC 449818 29 100.0 32 ............................. ATAATAAATAATATCACTAACCATATCCGGCT 449757 29 100.0 32 ............................. GGTCGAAACACATTCCGCTTTAACTCACTGCA 449696 29 100.0 32 ............................. CCGCCGCGTTAGCAGGCCGTAATGATCTGCTG 449635 29 100.0 32 ............................. TCACCAACTAGGGGTATTGATGTTACTGTAAT 449574 29 100.0 32 ............................. CATCGCGGATCTCGGGTATGTGGTCGCCTATG 449513 29 100.0 32 ............................. TTGCTGTAATGCTGGCCGAATCCAAACGGTTT 449452 29 96.6 32 .............T............... CGGGTAATGACGTTAATCATGGTTCTCAATTC 449391 29 100.0 32 ............................. CGCTGTTAGCTCGTCATGTTCACATCATTCCT 449330 29 96.6 0 ...........................T. | C [449321] ========== ====== ====== ====== ============================= ==================================================== ================== 30 29 99.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATCACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGAAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //