Array 1 520608-520373 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAV01000001.1 Enterococcus faecalis strain MP8-17 DIV1238_trimmed__paired__contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 520607 37 100.0 29 ..................................... ATAACGTAAATCACAGTCTTTTGTAAGTC 520541 37 97.3 29 ....................................G AAACCTTTTTTTGCGTTTGATATTTCTGT 520475 37 97.3 29 ....................................A TTGAATCTGGCCAGCTGGCGCTAATTGTT 520409 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 98.0 29 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Left flank : TTCTCGCCAATGTTACAATATCAAACATATTATTTCCTCCCTGATTTGCCTCCACACAAAGAAACAAGCTTACCTGAATTGTTCATTTCCATTAGCGATGACTCCTTTTATCTACGAAACTAAAAGAAAATTCAAGTGAACTTTTCCAAAAAGTGTGAAAATGCATGTAATATAGAATAATTCCAATCTAAGTATACAACTTTCTGAGGCAGAAACCAAACAATACAGAAGCATTTCTCACAATTTTTTTAGGTGCTACCAAGATTTCTTCCCGTTCTTCTATCAATAAAAAAAGCCCTTCCTAAAAAAAGGAAGAACTAATCTCAATCTATCAACATTTTGACTTATCACTTGATTAGTTTTCGAAAATTGAAGCAGCTCGTCTTTGATGATAAAAATTCTAATCTTGTGATGAAAATTACGGATTGCTTGAGGTGATAGTTTGTTTTTTAACAACATGGCTCTAAAACAGGGGAGAAAAAGCCAAATCAAAAAAGTTT # Right flank : TCGGAGAATTATTTTTTCTCCATGATTCCGTAGTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAAGGTCTAATTTTTTTCTTCACGTTTATTATACCAAACTTTTTCCTTCTTGGCGGAAAAACCCACCATTTTTCAATGGTGGGTTTTCTTTATTTAGTAGCTGTAACAGCGAGCCAGATTTCACTATACTTAGCTTCTGCTGGTCCTTGATATTGCGTAAACGAAATTTCTGGTGCTGCAACGACTTGGTAACCAGATGAAGGCAACCATTCAGAGAATATCCTTGCCCAGGTTTCTTGTAAAGTTTGTGGGAAAGGACCTTCATTTGGAAAAACCGCCCATGTATGAGCAGGTACGCTTAGTTGCTCCAAATCTTCATAGGTATTTTCTTGCAAAGTGGCAAAGCCAATCATGTGTGTCATTTCTCCACCCTCTGTTGTTCGTCCCTCTTGAAAGTCAAAAGAAGCATTTACTACTTGATGAGGATATACAT # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 224617-225574 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJAV01000004.1 Enterococcus faecalis strain MP8-17 DIV1238_trimmed__paired__contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 224617 36 100.0 30 .................................... TTGAAACACATAATCATTAACCGCTTTTTG 224683 36 97.2 30 ......A............................. TGTTTATTCTGCGGTTTCTCGCCAAATTAA 224749 36 100.0 30 .................................... CACTTCATATACCTTCTAAACGAGTTATTA 224815 36 100.0 30 .................................... GGATGTACCAGTTATTCTTGGTCTTTCAAA 224881 36 100.0 30 .................................... TGTTCCTCTTGATGGTGCTGACGGCAACCA 224947 36 100.0 29 .................................... TGTCTCTTTGATGGCTTCCTTTTTAACCA 225012 36 100.0 30 .................................... AAAAACCAAATTTAGAAACTATTAAAGATA 225078 36 100.0 30 .................................... AAAACAAGTAAAAGACGTGGGTAATCAGTT 225144 36 100.0 29 .................................... TTTTTCTCTTTTTCGGTTGTTAGCTCTGG 225209 36 100.0 30 .................................... AAACGATACCTTATACCATTGAATATAATG 225275 36 100.0 30 .................................... CGTTCCATTGCTTTAAACTAGTATCGGAAG 225341 36 100.0 30 .................................... GCACCTAGAACGACGTCAATCGGTTGGTTG 225407 36 100.0 30 .................................... GCAAAATGCCCGCTGCTATCTATTCAACGA 225473 36 100.0 30 .................................... TAAAGATGGCAATCCTAAGCCAAGGCTTGA 225539 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.6 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : CAATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //