Array 1 7024-3519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCM010000001.1 Corynebacterium ulcerans strain 02-13 NODE_1_length_838466_cov_75.376174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7023 29 100.0 32 ............................. CTTTACTGACCCTCTGGTGGAGTCTCTACACA 6962 29 100.0 29 ............................. ATGGAGGCGAGGCTTGACAAGCTTCAGGT 6904 29 96.6 32 ............................T ATGCCACAGGGTAGGTTTGATATTCGTGGCGT 6843 29 100.0 32 ............................. CGCACCTATCCACGAAAGGTTGGCAAGCAGAA 6782 29 100.0 32 ............................. GTGGTGAGCTATCCGGCTTGGTGGAGCAGGCT 6721 29 100.0 32 ............................. GAGACCTCGCTTTAGATGTCACCGGATCAATA 6660 29 100.0 32 ............................. GCTGCGGGTCCGAGCTTCGCGATCACGCGGTC 6599 29 100.0 32 ............................. GACTGGACATGCCCGTCCTGCGGCACACAGTG 6538 29 100.0 32 ............................. ATCCAACGTCATCGCCGCCGAAGCATGCCCCA 6477 29 100.0 32 ............................. ATCCCAGACTCCGAATCCGGTGTTTTATACCC 6416 29 100.0 32 ............................. TTTAATTTTGGGTATGGTGATCCCCGAGCAGC 6355 29 100.0 32 ............................. GGGGTTTAGCGCTCGATTGTTCGATGAACTCA 6294 29 100.0 33 ............................. CCATCACAACCCCCTTTACGTGTGATTACTCAG 6232 29 100.0 32 ............................. ACCATCGGTTCGTGTGAGCCATTCGGGGGTGT 6171 29 100.0 32 ............................. GATGTGGACGCGGTATAAATATTGCTCACTCA 6110 29 100.0 32 ............................. ACGGTGGGAAGCTGTGAGGGTTAGAGTGTTTC 6049 29 100.0 32 ............................. ATTGTTTGTAGTCCCTGCCCCACAGCGGTTAC 5988 29 100.0 32 ............................. GTGAAATCTTCTGATTTTGAGCTGGTGTATTC 5927 29 100.0 32 ............................. CAAAGGTGCATCCACATGATCACGCGCTCGCT 5866 29 100.0 32 ............................. GTCGCGAATCTGATGCTCGGTTAGCCGCAGTT 5805 29 100.0 32 ............................. GGCCTAGAAGCCGTGGATGTACTCAAAGAATT 5744 29 100.0 32 ............................. GGCAACGTGCCGGTGGGTGTGGCATTTTCCCA 5683 29 100.0 32 ............................. GGTCTTGACGTCAGCCTCAAGGGTTGCTACAC 5622 29 100.0 32 ............................. TCCGTTGGCTACGATGCTCCCCATGATCGCTT 5561 29 100.0 32 ............................. CTCGGACTCCACAATTTCACTCAGGTATTCGG 5500 29 100.0 32 ............................. GAGTACACCGCAGCGGATCGCCCCATACCGAA 5439 29 100.0 32 ............................. CGTCAGTGGTTTATTCATCGTTTCTGCTTTCT 5378 29 100.0 32 ............................. AGTGGATACCGTCGCAGTTGCCGTCACGGAAG 5317 29 100.0 32 ............................. TGCGACGGTATCCACTGTTTCGTCGCCCTCCT 5256 29 100.0 32 ............................. ATGGGGGCCGATCTCATGAACGGCACTGGAAA 5195 29 100.0 32 ............................. TGGAAGCGATTGGTTATCTCGAACGACTGCAA 5134 29 100.0 32 ............................. GGCCTTAGGATTATCAACGGCGAAAATGCGCT 5073 29 100.0 32 ............................. GTACCCAGCGGGTTGCCCTTTGCACTTTCCCA 5012 29 100.0 32 ............................. GCTGTGTGTTTTTTGTGAAGGTGGGTGGCATC 4951 29 100.0 32 ............................. GCAAAAGCGGCTCAAGGCTCAGCTGATCAAGC 4890 29 100.0 32 ............................. GTGTCATAAGCAGAAGACGCCCCACCAATGAG 4829 29 100.0 32 ............................. TTTTTCCGAGGGCATTAAAGAGCTGGCGGAAA 4768 29 100.0 32 ............................. GCTAAAAGCTCAGCCCCGCTTTTCCGAATCCC 4707 29 100.0 32 ............................. AAAAATTTTCACCCAATCAGGTCCGCGTGTCA 4646 29 100.0 32 ............................. ACGGGGGCTTCTGCGACGGATAAGCTGAAAGC 4585 29 100.0 32 ............................. ATCCTCCTATCACCAAAAATAGGAGGGATCCA 4524 29 100.0 32 ............................. TGGCTGCTCACTGACGAAATAGGTCATGTATG 4463 29 100.0 32 ............................. GATATGGTCGAGGTGGAGTGCACGTCATTGTC 4402 29 100.0 32 ............................. AAGACTGCTTGATCATGCTCTACTGCCGCTGC 4341 29 100.0 32 ............................. AGCTTGTTGGAAAGAAGACTGCGCACCTTGAA 4280 29 100.0 32 ............................. ACTTCTGCCTGAATCCAGTAGCCGTACCATTG 4219 29 100.0 31 ............................. ATCAATGGCGATGTGATTGCCTACGACCTCG 4159 29 100.0 33 ............................. CATCATCGTGATGGCAGTGTGGCGTGCAACGTG 4097 29 96.6 32 T............................ GGATCACTAGCGGAAATCCGTGGAATCAGCGA 4036 29 100.0 32 ............................. GGGCTAGAACCCGTGCGTCTTGATCCTGATGG 3975 29 96.6 32 ............................T AGCTGTGCCCATAGGCGACAGTAGCGTAGCGG 3914 29 96.6 32 ........A.................... CAGTTGCGGTCGAAGCCGCTGCAGCGGGCTGG 3853 29 100.0 32 ............................. GCTGGTTTCGGTGTTGCGGCGAATATTGTTGC 3792 29 100.0 32 ............................. CAATCGGCTGGCCTATAGTGTTCAAAACTTCC 3731 29 100.0 32 ............................. AAGCTGGGCAACCCTCGACCCCGCTGGAAGCA 3670 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 3609 29 96.6 32 ............C................ GATACGCTTAGACATAACACCGGCGGCATCAG 3548 29 82.8 0 ....................A...AGC.T | A [3522] ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.4 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCGCTTCATCCTATGGGGCAAATTATCTTATCTTTTGATTTTGCGATTTTATGTCTTCTCCTGGATATTGCGAGGGTGGTTAGTAGATCTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGATTCCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : ACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 149839-151211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCM010000003.1 Corynebacterium ulcerans strain 02-13 NODE_3_length_304752_cov_77.709843, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 149839 29 100.0 34 ............................. AATCGCGGCCACTAGAAGCCATGTGATTAAGTGC 149902 29 100.0 32 ............................. CAGGGGCAGCGGAAAGTGTTTTCTGCAGCACG 149963 29 100.0 32 ............................. TGCTCAAGCGATGCATTCAACTTCTGCAACTC 150024 29 100.0 32 ............................. TACCAGGCGGCTGCTAGGAACCCCCAGCGGGG 150085 29 100.0 32 ............................. CGTTTCTTGGTTTGTGTAAGTAAGGGGAGAGA 150146 29 100.0 32 ............................. ACCCAATCGCAGGCTTCGCCGGCGGTTTCGCC 150207 29 100.0 32 ............................. TCGAGTTTCACGGATCCCTGTAGGCCCCATAG 150268 29 100.0 32 ............................. TAGAGGAGGGGGTTGGAAAACCGCCAAAATAC 150329 29 100.0 32 ............................. CCTTTACCTTGCGCAGAACAAGCTGCACAGCA 150390 29 100.0 32 ............................. AAGGGCATTCCACCTCATCGGGCAATCGCCTC 150451 29 100.0 32 ............................. ACCGGGATCAGGCCAGGTGTGAGCTTCGCGAA 150512 29 100.0 32 ............................. CGGCACGCCTCATAGGGCGCTTGAGTATCGAA 150573 29 100.0 32 ............................. TTTAAGCCCGCGCAGGGAAAGTACCGCTTCCT 150634 29 100.0 32 ............................. CGGGTTTCCGCCGCATCAAGGCACTGCTTCGC 150695 29 100.0 32 ............................. AAGGCTCATTCTGTGGCTTTGCGCACCGCGTT 150756 29 100.0 32 ............................. CACCCCCGGCACCCTTACCGGCTGGGGGAACC 150817 29 100.0 32 ............................. AGGTCAATAGTGGCGACAATCGGTATGGGTTT 150878 29 100.0 32 ............................. GGTAAGCGCCACAGGCGCTAGGGAGGCGGTCA 150939 29 100.0 32 ............................. GGGTAGCTACCGACGCTTTTGATATAGGTAAT 151000 29 100.0 32 ............................. ATGCTCTTGACGGTGCCGAACTCAGCCAGGTA 151061 29 100.0 32 ............................. ATGGCGGGCTAGGTGATATTTGGGATAAAGTG 151122 29 100.0 32 ............................. GAATACGGATTCCGGTGCCACAAGGCCATAAT 151183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 23 29 100.0 32 GGAACTACCTCCGCATACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTGCCCCAATATGCGAGGGTGTGCGTAGTGCCCGGCGTGGGAATCGAACCCACGGGAAACCATTCGGGCTTTTAATTTTTAAAAGATCGTGTATAGTGGAACTTGGTTTTGGCTAAGGCCCCGGTTGTGGTGACTGGGGCCTTTCCTTTTGCCCATTTCCCGCCAGTTGTTAAAGAAGTTTGTCCGCGGATTTCACAACACCATGATTGACCAGCGTTTTTATCGTCGCAAAAACTTCGTTGATCTTGGTAGTCTTCACGGTGGTGTTATCGCCTTCAGGCCACACCATAGGGGCACTACGCTGCACAATCGCCTTATAACCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAAGCTTCGTAGTGGAAGGCTCAATAAAAACATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGACCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGTGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCTGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCATACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 222814-222328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCM010000003.1 Corynebacterium ulcerans strain 02-13 NODE_3_length_304752_cov_77.709843, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 222813 36 100.0 41 .................................... GACGCGGCCGTGAAAGAAGCGATCCGCGACGAATTCGGTAA 222736 36 100.0 41 .................................... CTGCCATGATCGCCAGCCCCCACGGGCCACCCAGTGCACCC 222659 36 100.0 39 .................................... TCTAGGACTTTTTCTATCGGCTGCACCATTTTTCCTAAA 222584 36 100.0 38 .................................... TGGCCAGCTTTAACCAGGGCATCAAAGAACGGCTTCAA 222510 36 100.0 40 .................................... CCATGTGATAGCCCCTATGCCCCTTCTTCCTCAGGCACAG 222434 36 100.0 35 .................................... GCGCTTGGAACACTCGCCCGGTTCGACATGATCTA 222363 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.6 39 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGACCTTGCAAAGATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTACTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACGTTTACTTACGAAGGCAGAAAGCAAGAGATCACTGACAACGAATTTCTGATTATCTAGCAGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTATGGTTTTCATAGAGCAACAACAATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCTG # Right flank : AAAACCCCTCGGCGGTGTTGAACTAGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGTCTTCCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTATACCTAGTCCTAAGAGAAACAGCGAAACCCAGCCCAGCCCAACGCTAGCAGTATCACCAGAAAACTTGAGTATAAGGATTCCTAATACACCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCAGCGGAATGAGGCTGAGAATCGGTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //