Array 1 968919-967025 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851053.1 [Clostridium] clostridioforme 90A3 acBSk-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 968918 32 100.0 34 ................................ ATCAATCAACGAGTTTCACCTCCGCCCCGTCCAG 968852 32 100.0 34 ................................ AACAGATATGAAAGAGGACTTCGTGGAACCTCTC 968786 32 100.0 34 ................................ TTCAAAATCGCCAGTCCATTTACCCCTATGGAAA 968720 32 100.0 33 ................................ TCCGCCTCTGCTATAAAACCTATCTTGTCAGGT 968655 32 100.0 34 ................................ ATACGGTATCTCTCCGCTCTCGCACATCTCATGG 968589 32 100.0 36 ................................ CACCTGGGCCGGGGCCATGGATGCAAGGTCCAGGAG 968521 32 100.0 34 ................................ CGTCAAGTATGTCGGATGTGGGAAAACAGGCTAT 968455 32 100.0 35 ................................ CCCCAGGCGGGTACCGCAATGGTATCCAGTCATGA 968388 32 100.0 34 ................................ ACCCGAGATGTCCAGAAGGTTACTTTCCAGCCTT 968322 32 100.0 35 ................................ ACAAACCTTAAGGTCACTGCTTACAACGCTTATGC 968255 32 100.0 36 ................................ ATATCTTTCCCTTTCCGCCCTTCCGGGCAATAAAAT 968187 32 100.0 35 ................................ AAGCGAGTGAATTAAGAACAGTAAAAGTGCGCAGA 968120 32 100.0 34 ................................ ACAAAGATGACCACGCGCCTGCGGGATGGTGGAT 968054 32 100.0 36 ................................ TACCTCTAACATCATAAAGGTAAGGGTGCCCAAACA 967986 32 100.0 34 ................................ AAAGTAGTAGTAGACTTAGCATGTCCCAGGATAC 967920 32 100.0 33 ................................ CCTACAAGGAGCGCATTATATACTCTTGCTTGA 967855 32 100.0 34 ................................ TGTACTGAATAAGAGTAATACCCCCGCTTGCCAC 967789 32 100.0 34 ................................ CTCGAACCGAAACGCCTTTAATGTCGCCGTCCCC 967723 32 100.0 35 ................................ TCCACAATCTTGACAATAGTCTTGCCCCATCTCAA 967656 32 100.0 33 ................................ TTGTGCAGTATTTCAATGCGGTGTTTCTGGTAA 967591 32 100.0 35 ................................ GCTATTATCTTTTTTACCTCACTTTCGCTGATTTC 967524 32 100.0 37 ................................ CCTTCCTGGCCGTCCTGCCCTTCCTTGCCTGCCTGCT 967455 32 100.0 35 ................................ ATCATGCCGTTCGTGATTCCCACGCCCGCCGCCGT 967388 32 100.0 34 ................................ CCTCACGTGCCCGTCCCCGGCCGTCTGGTACTGC 967322 32 100.0 34 ................................ ATCCATTAACTGAGCCGCAAGCTCACCCGTCTGC 967256 32 100.0 34 ................................ AGACCAGCAGACGGCCGATTTTATCAATTGTGTC 967190 32 100.0 36 ................................ ATGGACATGTACCGGCTGGCCGTTGACTGGCTTATG 967122 32 100.0 34 ................................ CGCAATCCGCAGTGCACCTCTGGCATCCGTAATC 967056 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 29 32 100.0 35 GTCTCCACCCTCGTGGTGGAGTGGATTGAAAT # Left flank : TGCTGGTACTGATTACATATGATGTGAATACGGAAACCGCCGCAGGCAGGGCCAGGTTGAGAAAGGTTGCAAAGCAATGTGTCAATTATGGCACCCGCGTCCAGAACTCCGTATTTGAATGTATTTTGGATAATGCCCAGCTGATAAAGCTAAAGGCGATACTGACAGATATAATTGATGAACAGACGGACAGCCTTAGGTTTTACAACCTTGGGAATAAACACACTACAAAAGTGAACCATGTTGGGATGAATAAGGGGATTAATGTGGAAGAACCGCTGATATTCTGACCTGGCCGCGGGCGGTAAAGCGGTATAAAGTATTTTGGTGCGAACCTGAAGCAAACATGGATTTACGGGGAGATTCGCACCGGAAAATTTGCACAATGAGAACGGATTTGCGAGTGTGCAGGGATGGTTGGCCGTGATTTGAGGGGGTGGGATATGATTTGTTTGTGGAAATGTGTTGAAGAATAGTAGTGGTTATTGTGTAGTATTGCT # Right flank : TCCGGGGTAGTCTCATAGCCGTTCACATAATAGCGTCTCCGCTCTCGCGTCGGAGCAAGTTAAAAATCCGCCAATTACAGAATTACATCCAGTTGCCCACTCCTCTGCCCTTTTCGCAAACGCCGCAATCCCTTTTGAACTGCAAAAAAGGTTAGGTAAAACTAATTCCGTACAACAAAAAAGATGGGGCAAGCCCCATCCCTTCCATAATCTTGTTAGAATGTACAAAGAATGCATACTTCCATTATCCCTTCCATGCCCGAATCTCTTTAAGCCCCGGCACCAGCACCTTAGCGCTGGTTTCCAGAATGATCCGTCCCTTTTCAGCTGTGGCGCCTGAGGGGTCTCCGCCGATTCCGATGGGTTTGCCGTCTGCTGTTTTCCAATCCTCGGATACCCAGCCAATGGATACATTTCCGTAAGGTTTCAGCGCCTGATTGTCTTTAAATGCAGTGGGAATTCCTGCCTCTGAGGTCTCTGACTTTACCAGGGACGGGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACCCTCGTGGTGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCACCCTCGTGGTGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 563261-561542 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851057.1 [Clostridium] clostridioforme 90A3 acBSk-supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 563260 33 100.0 35 ................................. TCATATCAATATTATGCTCAACATTGGCACTACAC 563192 33 100.0 33 ................................. CAATTCAGAAAACGCCAATAAACAGGACAAACC 563126 33 100.0 34 ................................. AACAAGGCCCTGGCGGAAACGCCAACGACCTACC 563059 33 100.0 33 ................................. TTAACAATGTACTACTTCCAATTTCAAAATGGG 562993 33 100.0 37 ................................. TAATATTGCTATTGTGTAATTCTCAAAAAAATGCTAT 562923 33 100.0 35 ................................. GGACCAGCGCATCCATCTCAGGGTATCCTCTCCTC 562855 33 100.0 33 ................................. CCCCTCCATGGTCAGGGCTTCCAGGCGGATGTC 562789 33 100.0 34 ................................. TGGAGAAACAGTCGGAGTATATCTCCTGCGAGGG 562722 33 100.0 34 ................................. CTACAGGAACGCAGGAGCCGGCCATCCAGGAGGG 562655 33 100.0 34 ................................. ACTGCAACACTATCACAATGCCAAACTCCGACCA 562588 33 100.0 34 ................................. CGTATACTCAGACGGTCAGTGTACCGGGAGCAAA 562521 33 100.0 35 ................................. TGCAAAGGATGGAAAAATGCAAGAGGTTGCCGGAT 562453 33 100.0 33 ................................. CTAAAAATAGGTATAAAAAATACAGCTCCGCAA 562387 33 100.0 34 ................................. ACACTCATGTCGAAAATCAACATCCTGATAGTCT 562320 33 100.0 35 ................................. TGTGTTAGAAGATGCGAAAGTCTATGTTGGTTGGG 562252 33 100.0 35 ................................. TGTCCGGTAGACTTATATATATACTGCATGGGACT 562184 33 100.0 37 ................................. AAAGTTGGCCTGTATCTCAATCATAAATCGCTCCTGG 562114 33 100.0 34 ................................. TCCGTGATATTCGCAACCTCACTGGAATCCGGGG 562047 33 100.0 34 ................................. CTCGCTCCCAGGCTTAGCCTCGTAGCTGTACACC 561980 33 100.0 34 ................................. ATAGCCTGTGCCACCTTCCACCAGGGAAGGCCGT 561913 33 100.0 35 ................................. ACAATATGCAAACAAGGTAACGTTTTTTGATACCC 561845 33 100.0 35 ................................. CTGTTCTCATGGTTCTTTCCTTTCCGATTCTTGTT 561777 33 100.0 36 ................................. TGCCAAACTGACCAATTACCGGATTGAGCAGCTAGA 561708 33 100.0 34 ................................. TTTTTTAGTCCCTGGTGAGGAGCCCGGCTGGAAA 561641 33 100.0 34 ................................. ATCCCTCATTGCCTGGAACGCGTCTCTCGCCGTA 561574 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 26 33 100.0 34 GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT # Left flank : CCTGGAATTTCCGGAGAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAAGCGGGAAATCTGGCAGCTGTAATGGAACGCCAGGGCAGGGTATTGCGCATTTACGATGTCAATGATAAGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCTATATATCCGGAACAAAAGAGGCTTGTTTTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCACTGCAGCATGCGGGATATATGCGTGAAATGAAGGATTATGTAGTGTATAAGTAGAGTGTGATTTCTGTGAGGCGGAATCCCATCAAACCAGGTGCGAATGCCAAGCTAACATGAAATGTCCGGGAGATTCGCACCTGAAAAACAGAGGAAAAGCCGTGAAAATAGGCTGGGTGAATGGATGGAGGAGGTTGAAATAAGGAGGGGGGGGGGGACATAATGCATAAAAAGTTAGGGGGATGTGGAGGGATTGTTGGATAGTTTTGCT # Right flank : ATAACATGCTTTATATACATATGCTTTTCCTTTCCACCACTGCTGGATATGTGGTTTATTTTAGCTGGCCGATTTCGTGATAGGCCTCCAGAATACCATTTTTGGCTGCTTTTTATACAGTATCAATATCAACCCAATACCAACACTAACCCAATACCACCCCAATACTAACACCAATTCTTAATCATGCAGAACCATTAGGCAATTGCGAAACTCACTGACCAGAATTTATGCACATCGTATAGGAATGAATCTAAATTGAATATATTAAGCAAGATATTTTGTGCAAGGTGAATATAAAAATTCAGAGTTTCGCAATTACCTAATGCAGAACCATTTCTGAAAGGAGAGGGAAAAGCCATGAAACAGATGTCATTATTCGATGACAGAGAAGTATACAATCCCCTGGCCAGCAGGCTGCGTCCGGATGACCTGGATGGATTTGTGGGACAGGAGCATCTTTTGGGAAAGGGGAAGCTGCTGCGCCAGCTCATAGAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCCCGCGAGGGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 525838-525563 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB851056.1 [Clostridium] clostridioforme 90A3 acBSk-supercont1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================== ================== 525837 32 100.0 28 ................................ GGTCTAAGTAATACCACTGTCCTCCCAG 525777 32 87.5 28 CCT............................C CGTCCAGATAATACCATCTTCCATTAAT 525717 32 81.2 28 ...............CT....TT.A......C CGTTCATATAATACCATTTGCCGTTGAT 525657 32 78.1 31 ...............C.T...GATA...T... ACGGATTCAGATAATACCAGGTTCCGTCCAG 525594 32 71.9 0 CTT...............A...TA...CT..T | ========== ====== ====== ====== ================================ =============================== ================== 5 32 83.7 29 GGCCTGCCAGCCGGTGAGCATAGCGCCGCTGG # Left flank : TGACCGTAATACCTTCAGACAAGCGCTTTCCCAGGGCCAGACGTGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTCACCGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATACTCTCATCCACTTGCACGCCCGATACTACATACCGGCCGCCGATTTCACACTCGTTCAGCTTTTTCTGCATTGCTGCCTGTCTCCTTTTGTAGTTGCATTTTAACCATATTCATTGTATGCTTATTGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTTCAAAAAAGAGGATGCAGCGAATCTCTCCGCTGCATCCTTTCTATACGTTTCGGTTCTATTAATATTGATTTTAGGCTTTACTGCACCCAAGCTCCGGAACCATCCACATATTTTCCATCCGGCGTCCATGTATTATAATACATGGCTCCGTTGGTGCCCAGATAGTAGTACTTGCCATTGAT # Right flank : TATTAAAATAATACCATGCGCCGTTAATCTGCTTCCAGCAGGATGCCGGATATCCGCCTGTATCATAAGCATACCACACGCCTGTACCGTCCTGCTCCCAATGCCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGCTGGAATCCTCGGACCATTCACCTGTCTTATTGTTGTAACGGGAAATGGCCCTTACACGGAAGGTATAGTCTCCTTCCCGGTTAAAATAGCCTGCAAAGTTATAGGAGGTTCCTGTGGTGCTGACCGTAGTGACTGTCTTGTCGTCACGGAGGAGTTTCACATCGTAGCTCTTAGCGCCCTCAATCTCCTCCCACTCAGCCGTGGTGTCACTCCACTCCAGATCCGACGCGCCCTGAAGCTTACCGCCGATACGTTTTAGCTCAGCATACACCTCAATGTACTGGCCATCGTCATAAATCTTTGCTTTCTTGAAATCCGCATTACATCCGGAAAGAGAGAAATGGCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.19, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTGCCAGCCGGTGAGCATAGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //