Array 1 70177-71541 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEN01000007.1 Pasteurella multocida strain 2597PM isolate swab isolate 1 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 70177 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 70237 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 70297 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 70357 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 70417 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 70477 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 70537 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 70597 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 70657 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 70717 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 70777 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 70837 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 70897 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 70957 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 71017 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 71077 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 71137 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71197 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71257 28 96.4 49 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCTTGAAAT 71334 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71394 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71454 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 71514 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 23 28 99.5 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96393-91323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQEN01000006.1 Pasteurella multocida strain 2597PM isolate swab isolate 1 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96392 28 100.0 32 ............................ TCAAAATCCTATCTAGATCACAAATCGAACAT 96332 28 100.0 32 ............................ ATTCAGCGTAGCTTGTTGGTGACCCTTTGTAA 96272 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 96212 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 96152 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 96091 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 96031 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 95971 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 95911 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 95851 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 95791 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 95731 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 95671 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 95611 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 95551 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 95491 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 95431 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 95371 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 95311 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 95251 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 95191 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 95131 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 95071 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 95011 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94951 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 94891 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 94831 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 94771 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 94711 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 94651 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 94591 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 94531 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 94471 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 94411 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 94351 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 94291 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 94231 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 94171 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 94111 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 94051 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93991 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 93931 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 93871 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 93811 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 93751 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 93691 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 93631 28 100.0 32 ............................ TCTGTCGGCTCTAACCACATGACCAAATTAAT 93571 28 100.0 33 ............................ CAAGTGAGTGGGCAGGGTATTGTAAAGGTAACA 93510 28 100.0 32 ............................ ACAAACTCCCTAAAGCTTTGCCGTACATTAAA 93450 28 100.0 32 ............................ AAAATTCACATACAAGGTACTATACCGTCGGA 93390 28 100.0 32 ............................ GTAGATGTGCCATTCAACAAGACTCAAGTACG 93330 28 100.0 32 ............................ ACTATAATGCTACCTCACTGGGTTGGCGCTGT 93270 28 100.0 32 ............................ ATGTTTGTTCCCCTAGTTGGTTGATTGGTTGT 93210 28 100.0 32 ............................ ACTTCCGCTTGAAAGTGCTGGTTTGAAACTTT 93150 28 100.0 32 ............................ ATGGGGACAATCAACGACCAGTTAAAAGCAGG 93090 28 100.0 32 ............................ GAATTTCCCGCCATCAACGCGCACTTTTCCGC 93030 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 92970 28 100.0 32 ............................ AGTGCGGCGTGCCGTCGTGGTGTGGCTCTGTT 92910 28 100.0 32 ............................ GATCGCAAATAAAATCGCCGATCTTGGCACTA 92850 28 100.0 32 ............................ GCGTCGGCGGGAAGTTATCGATCAATCCCTGA 92790 28 100.0 32 ............................ TGCTGTTCACTGGCACAATAGTAATGGTTCAT 92730 28 100.0 32 ............................ TAAATAAACCACTAAAACTAAGAATTTTTTGA 92670 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92610 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92550 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92490 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92430 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92370 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92310 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92250 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92190 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92129 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92069 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92009 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91949 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91889 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91829 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91769 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91709 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91649 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91589 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91529 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91469 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91409 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91349 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 85 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //