Array 1 798074-796948 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 798073 29 100.0 32 ............................. TAAGCGAACACCTCCAGCGCCAAACTCGCAGC 798012 29 100.0 32 ............................. CCAGTGAGATGTGTAACGCAGAAGGAGCACTG 797951 29 100.0 32 ............................. CCAGCAGGGATGAGCGGTATATGCATGACCTG 797890 29 100.0 32 ............................. GCATTTCACTATATGCTGATAGCGCTCCAAAC 797829 29 100.0 32 ............................. TCTTGTAGTGGTGGGGGTGTGCTATGGCGTTT 797768 29 96.6 31 ............................A GTTTTCGTTATAGCCTGCACGTGCAGGCTAT 797708 29 100.0 32 ............................. CGGCGTTTTTATGGCGCATTGCCGGAAAACCG 797647 29 100.0 32 ............................. CGCGGTTGGTCGCTGCGCTCCGGCGGTTCGAT 797586 29 100.0 32 ............................. CGCGTCGTCGGCAACGTTCTGCTGGTGGTGTA 797525 29 100.0 32 ............................. AGAAGCGTGTGTTGTGACAGCGGTTGCGGAAC 797464 29 100.0 31 ............................. CGAGCCGTATCAGGAACTGGCTGAAACGCCA 797404 29 100.0 32 ............................. TGCGCAATCATCAGCGCGTCGATAGCGGTCAG 797343 29 100.0 32 ............................. TGTGATAGACCCGCCTGCTGGGATGCCCTGGT 797282 29 100.0 32 ............................. TGCGCAATCATCAGCACGTCGATAGCGGTCAG 797221 29 100.0 32 ............................. CATGCTAGTCCGGCCTGTCATCGCGTGCGCGA 797160 29 100.0 33 ............................. CGAGCAGCGAGCGTCACACCTAGTCGGCACGCC 797098 29 100.0 32 ............................. TTTCCGCAGTGTGCACGATCGCGCCAGGCGCG 797037 29 100.0 32 ............................. GATGTAGTCTTTCTCAAACGATGTGTCGTTGC 796976 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 ATTGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : ACGCATTGTCGATGATCTCCACAGAATCTTTGACATCTCAACGCTCGATCAGCGCGAGTCGGAGTTGTTTGATCGATATTATGCCCGCCCTGGCAACCTGTGGGATCCGGAAGAAGGGGAGGTTGCTGGCGGCATCAATTACAGCGAAGAGGAAGTTTCATGACTGTCATCATTCTGGAGCGAGTACCTGTCGGTGTGCGCGGTGAGTTGACCCGCTGGATGCTCGAGATACATACCGGTGTTTTCGTAGGTACGCTATCGGCGCGAGTACGAGATCTCTTGTGGGATCAGGTATGCCAACATATGCGAGATGGCGCGGGTTTTCTGGTGTACCAGACCAACACTGAGCAGGGATTTGCGCTACGGAGTTGCGGACCCACAAATCGTCAACTCATACAGGTAGAGGGGCTCTTTCTGGTAAGAATACCGTCCTGATGCGGAACATGACTTCGAGGCTTGTTTTTGGAGGCGAATCGCATTAGAATGCCTGAGACGCAAGT # Right flank : TTTTACTGAAAGCATTCATGTCAGAGCATCATTTGGTCGTTCTGTCATGTTCCTGGGGCGCCGGAACCGTGCGCGTTCCTGCATCGCTTGTGTGTACGGGTGTCGTGTCCATACGCAGCGATGCGAACCATCACAGAGCGAGAGCATCTCGCCTTTGACTGCCTCGCAATGGCGGGAAGCCCTCGCTCTTCGGCAACCAGCACGGAGGGTGAACAAACTCAACGGCTCCTGTGCCATCCTCCTCCGGCAGCGCATCAATCACAACGCCGACTGCGCCGGATGCGCCAGAAGTAAGCGCCGCTGCGCCCAACCCGGAAACGCACAACACAGGACGCCACGCCGCTGCGCCAGCCAGGGAACGGGAAATCCCTGGGGTCTGGAGCCTACAGGGACAGGTTTTTTGGGAATCTCCTGCGTTCCTTCTCTCGTTTTGGGCTTCAGGACGCGCAGACTCCCCCTTCTCCCCTTGTGGGAGAAGGGGGTTGGGGGGATGAGGGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2316716-2320557 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2316716 37 100.0 37 ..................................... ACGACATATTACGGGAGACGTGCATTCCCGCGGAATA 2316790 37 100.0 36 ..................................... AGACGTTGACGCCATCAAACCATCGGATTTCAACGT 2316863 37 100.0 36 ..................................... TCGGAAAAATCCCGACGTTGTGCAGCACAAACTGCA 2316936 37 100.0 39 ..................................... CCGACCGGAGCCAGTCCGGTTCGGGGAGATGTGTGGCAA 2317012 37 100.0 36 ..................................... TTCGCGCGGGAAACGCGGAAGTCGTTCTCCAGTTCG 2317085 37 100.0 37 ..................................... CACGTTGAAGCAGTAGGCGTCGCCGGACGGCGTTGCG 2317159 37 100.0 36 ..................................... AGCGCGGCGTGGATCAACAGGCGGTTCCGGTCAACG 2317232 37 100.0 35 ..................................... CAGACGACACGGCCACCACACCGCGCTTGGACAAA 2317304 37 100.0 36 ..................................... ACAATGTGTTACCCTCACCTTTGTGGGGTACAACAT 2317377 37 100.0 38 ..................................... ATCACACGCAGCAGATCGAGCCACTGGCCGCCGCCACG 2317452 37 100.0 35 ..................................... AAAGTTCGTATCTTGGCAGTTTGCGTCGCATTGTA 2317524 37 100.0 38 ..................................... ACCGGCAAGCGGCTGGAGTGGCGGATGAACTTGTCAAC 2317599 37 100.0 36 ..................................... ATACTCGAAGATGCGTTCGTCTTCGAGTTCGAGGTA 2317672 37 100.0 36 ..................................... CTCTTACCCGGGTGGTCAAGCCGCGCCGGTTTCCGC 2317745 37 100.0 36 ..................................... TCGCTGCGCCGCCTCATCGAGGTCGGCGTACTCGAA 2317818 37 100.0 35 ..................................... GATCCAGGCGGGCGTCGAGGCGCAACTGCGCATCA 2317890 37 100.0 35 ..................................... CGCAGAATTGTTCTACCGCCGGTTTCTGCCGGACG 2317962 37 100.0 36 ..................................... TCTGTGCGATCAGGCGCTCGTAGGGCAGACCGAACG 2318035 37 100.0 36 ..................................... TTCGACCGGCTGATGCTGAAACGTCAGCGTTGTCGG 2318108 37 100.0 36 ..................................... GCGCGTGTTGTCGGTGGGGCATCGCGTCTCGCTGGT 2318181 37 100.0 35 ..................................... GCGCGTTGGTGGACGGCAGCCAGGACGCGCCGGCG 2318253 37 100.0 35 ..................................... CTGTGCGCGGCGGGATGAGACCCGCTTGTTCTAGT 2318325 37 100.0 35 ..................................... GAATGCCCAACGCCCGCGCTTTGCTGACGAGTGCG 2318397 37 100.0 37 ..................................... ATGGACGGATCGGCGCGGTACTCGTGGACGAGCTGCA 2318471 37 100.0 37 ..................................... GTATTTCGGCTTTACTGGTCTCTTACCGGCGGCGTCC 2318545 37 100.0 36 ..................................... GTCGTGCGCACGTTTGTGTGTCAGGGAGACTCGTAT 2318618 37 100.0 35 ..................................... TCTCGATAAGTTTGTGGTTGCTCACCACATTCATT 2318690 37 100.0 37 ..................................... CTCAGTACGTTCAATCGCCGCATTGCGATAGAGATAG 2318764 37 100.0 35 ..................................... GTGTGTAGTAGCGCTTGCGCGCGGTTATCTCAATG 2318836 37 100.0 35 ..................................... CGCTTCCGCCTTCTTGATTACCGCGCCCGCAATCG 2318908 37 100.0 37 ..................................... TCGCGGCAGAGGCAGCATCTCGCCGAAGGCGGCGAAG 2318982 37 100.0 36 ..................................... GCAAACTCGCGCAGCGCCCAGGCGAGGATGACGACG 2319055 37 100.0 36 ..................................... AGGAGCAGGCGGCGTCTCCCTCCTCTTCGAGGCGGA 2319128 37 100.0 37 ..................................... ATCGGATATGGGAAGGCGTTAGGAACTGGGACGGTAA 2319202 37 100.0 37 ..................................... GTCGGTGCGCTCCGATGCGTACCCGACGACGATTATC 2319276 37 100.0 36 ..................................... CGTAGCGGAGAATGCGATACTGAATATCGCTGTCTG 2319349 37 100.0 37 ..................................... TCCTCATACTGACTCAACCACTCGTCAAGTTCCAGCA 2319423 37 100.0 35 ..................................... GCACGCGGACGAAGGCGTGCGCAGCACATCGAATA 2319495 37 100.0 36 ..................................... TCACGCCGTCGGCGACGTGGATGCCGGGGAATGGAG 2319568 37 100.0 37 ..................................... TACGTCGGGATTGTCAAGCGACGCGCCGCGTCAACGA 2319642 37 100.0 38 ..................................... GTCGAAGGTGACGACCTCGTAGTTGGTGTCACCGGTGA 2319717 37 100.0 37 ..................................... GTCACTTCCGCGCCGATTTTCTCATCAAACCACGTGC 2319791 37 100.0 36 ..................................... TCCGTCGTACAGCCGGTAGAATACCCGTTCGTCCGT 2319864 37 100.0 37 ..................................... TTCTTATTATACCGGAAACGCCCCGCTTTTTCGTACA 2319938 37 100.0 36 ..................................... CGAGTACGACATCTCAGAAAGGACGGTACGAATTGA 2320011 37 100.0 37 ..................................... TTCAGCCTCGTCCGCCAGTTCGTTCCAGCGGGTTGCG 2320085 37 100.0 36 ..................................... GCTGCGTGTGGGCGCTGGCGAGGTAGAAAGGATTTG 2320158 37 100.0 35 ..................................... AGGGGAGGAAGGTAGTCTATGAACACCATCTCTTG 2320230 37 100.0 38 ..................................... GGCGACGACAGTGATTATACGGTTATCGAGATTGTCGC 2320305 37 100.0 35 ..................................... GCCAGAAACCCGCAGCGACTCGCTTGCGCGCCAAA 2320377 37 100.0 36 ..................................... GATCTATAGCCGCGATAGCCGTACAGCGCATACGGT 2320450 37 100.0 35 ..................................... TGCAGCGACGTCGCATCACCTGAACCACCTGCAAC 2320522 36 94.6 0 ................................-.G.. | ========== ====== ====== ====== ===================================== ======================================= ================== 53 37 99.9 36 ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC # Left flank : ATCTACCACATGCCGGAGCGCAAAGCCGAAGCAGTGACCATCAGCGCAGCATTGCGCACGCGCGTCAAAGAGACCGTTGCCGCCATCCGCGCCACCGTCGACCATGAGCGCATGCCGCCGCCGCCGGCATCGCGGCGGCAGTGCGCCGTCTGTGAATTTCGCCGGTTCTGCAACGACGTGGTGTGATGGCACATGCGTTCGACGCCCGATCCCCGATTCTGGGGCATTATCGGCGTCGTTTTCGCAACCCGTCCATCGTGGGGTCAAAACAGCAGATCTTCTGATCAAGGTGTCAACCGTTTTTTCAACGTTTTGCTCATTGGAAAGGGAAGCAGCGTGTTTCGCAACTTGACGCGGTTCTGGCGCAAAAATCGAGTTGCGAAACGCGCCCGTCCATGCTAAGATACGAGTGTTGAGATGAAACACCAGGAAGGCTCAGGAGCGACGAAGTGCAGTTATTGGGGTCTGGAACACAGGTGCGGAAGAGAGTGGAAGTCGGG # Right flank : CTTCATCAAGATTCGTTTTGATTTTTGGACTGCTTTTTGCGTTTCAGCCAAATTCGGAAGTTATGCAGCCCGCAACATGTTTCCATGACCATATCCCGAAATTCGGAACAACTGAAGCGGATAATGTCGTGAATGATTCGATACCGCTTGATATCGCCGATAACATGTTCAATACGAACGCGAACGGATGAGATACGCCGGTTTTCCTCCTTTTCCTGCGGCGTGAGGGTTCCATTGCGCGGCTTCTTCTTTGGCTGCATAATCTGGACGCCAGGCAGGGTAAATCCTTGAAATCCGGCGTCTTGATAGAGAATGCTCGCGTTTGGAAGGGTGTATCCCGCTTCATCCGCAATACATTTATCGTGGACCCTTCCTTCGTAGGTGTCACTCAAAAAGTGAATAGAGCCAAACTCATCAATGATGAGAACGTTCTTAAGCGTATGTCGTTTCTTCTTACCGCTGTAATACAACTCCCGGTCGACTTTGTCGCTTGGACGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 2321726-2325240 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================== ================== 2321726 37 91.9 35 .....G.........A............T........ GGTCGAAGTCAAAAGGCGGGCAAGCGACGGATCGC 2321798 37 91.9 37 .....G.........A............T........ TCCCGACTAACTCATCAAGCACGCGCCGGGGCATCAT 2321872 37 91.9 36 .....G.........A............T........ CGCAGCATCACGCGCGCCTTCAACACCGCGTAGGCG 2321945 37 91.9 35 .....G.........A............T........ GTTGGCGACGTACAGCAGCGTTTCGCCCAGCCGCG 2322017 37 91.9 35 .....G.........A............T........ TGACAAGGATGGTTCATCGCCTGGCGCTGGATCGC 2322089 37 91.9 36 .....G.........A............T........ GCGACGATCGGCGTCAACCGCGCCTCCGGCAGCACG 2322162 37 91.9 36 .....G.........A............T........ TCAACACCGAAGCGCGTCAAGTGCCCGACGCGCCCG 2322235 37 91.9 35 .....G.........A............T........ TCAGCATCAACTCCGCGACCGCTTGCGCATCGTTG 2322307 37 91.9 37 .....G.........A............T........ GGCGGCGACCAACTGGTCGAACAACATCGGCGCGCCG 2322381 37 91.9 37 .....G.........A............T........ GCGAAGGCGTCGATGCGCGTGTCGATCACGCCGAACC 2322455 37 91.9 35 .....G.........A............T........ AGTTGGAACCACCACTCCGCCGCCCGTCGGTCGCG 2322527 37 91.9 35 .....G.........A............T........ TCACGAGGTCGAAGAAGATGAAGAAGTACACCATC 2322599 37 91.9 36 .....G.........A............T........ GCGATTGCAGCCGCAGCGCTTTGTACAGCAGCGCTT 2322672 37 91.9 39 .....G.........A............T........ CTCTTCCAGTTCCGCTTTGCGCTCTGCGTCGCGCTTCTC 2322748 37 91.9 35 .....G.........A............T........ TCGCCAAAACGTCGTTGGCGATCGGTTGAATAAAT 2322820 37 91.9 36 .....G.........A............T........ GTCGGTCTGGCGAAGAAACTGCACTGCGAACTGAGC 2322893 37 91.9 35 .....G.........A............T........ CGATGCGCTGTTCCATTGCGGCGTAGTCGGCGTTC 2322965 37 91.9 36 .....G.........A............T........ GCGATACGCGCTCGAAGATCGGAATGAAAACGTCCA 2323038 37 91.9 39 .....G.........A............T........ CGCGTGGCGGTCGAGCGGCGCGTCCGGCGGCAGATGCGC 2323114 37 91.9 37 .....G.........A............T........ TCTGTCCAGCGCGCGTAGACCGCAAACGGGTGCGGCG 2323188 37 97.3 35 .....G............................... ACCAGTAGTGATAGACGACCATCACACGCCTACAG 2323260 37 100.0 36 ..................................... GCCCGAAGATGGCTTGCAACGCCTTGAGTGCTTCGC 2323333 37 100.0 38 ..................................... AGCCCTTCGGTTTCCGTTGCCGACAGAGCATGATCTGT 2323408 37 100.0 35 ..................................... CTGAAGCCGTACAAGGCAAACGGTTGCGGGTCAGG 2323480 37 100.0 37 ..................................... CTGAAGAGATCACGTATGTCCAGACGCACCCGCCGCG 2323554 37 100.0 36 ..................................... CTCGATGATGCTGTTGTGGACGGCAGCGGAGATCTG 2323627 37 100.0 37 ..................................... GGTCCGCTAATCCTCGAGATCATCACTGGCTGGTACT 2323701 37 100.0 35 ..................................... CCACAGACTCCCGGACTGCACCTCCAACCAATACG 2323773 37 100.0 36 ..................................... CTGAGTTGGCGCTGCCGGTGCTGGAGCAAGATCAAG 2323846 37 100.0 38 ..................................... GTCCGTCGCCGCCAGCTCCCGCGCCACGCTGCGAATGA 2323921 37 100.0 36 ..................................... GGATCACCAGTTCGATCGCCACATCCCTGAGTTCAG 2323994 37 100.0 38 ..................................... AAAGTAAGTTCTGCCCCTGTTAGAGCGCCCCACCAGAC 2324069 37 97.3 35 ...............A..................... GGCAGGGCTGTACCGTCGCCCGGCACGCCGTACCG 2324141 37 100.0 35 ..................................... CTGGCGAGGGGAGTACGAACTCAAACGACACATCG 2324213 37 100.0 37 ..................................... CCTGAAACACTGATAGCGCCCCCAGTCGGGGCGCTAT 2324287 37 100.0 38 ..................................... TAGTTTTGAGAGAGTTGGGCTTTGCGCTGGCGTAGGCG 2324362 37 100.0 37 ..................................... TCCTTCCGCGACACAAACTCACGGTAGGAGGCGACCA 2324436 37 100.0 36 ..................................... CTGGGCGACAGTTGCGCGGGAAGTGGGCTTGACGGA 2324509 37 100.0 37 ..................................... GGCTGCGGGCAGACCGGTACGGACAAAACCAGCACGA 2324583 37 100.0 36 ..................................... CTCGACCGGAACGCGCTGGCAGTAGAATTCGGGCAG 2324656 37 100.0 36 ..................................... CTGGGCGTTGCGCCCGCTCAACTCAACTCCGCCGAT 2324729 37 100.0 37 ..................................... CTGTTGGTCGATACGCTGGCGCTTGCGCTGGAGCAGC 2324803 37 100.0 35 ..................................... AGAGAGACGTAGGAGGAGATCACGTGAACCTTCCA 2324875 37 100.0 35 ..................................... TGGGCATCGTTGATTCCTCTCGTGTAGCACTTGAG 2324947 37 100.0 36 ..................................... TCGCTGACTACGAGTTTTCAACGTCTGATGACGGAG 2325020 37 100.0 38 ..................................... TCTGCGCGTTGTTGCACCAGCGCGCCCCGCGTCGGATC 2325095 37 100.0 72 ..................................... TTTGTGGGGGCGAATAATCATTCGTCCCCACATCGATTTCACCTCCACATCGATTTCGTGAGGAGAGAGATA 2325204 37 70.3 0 ......T.G.CCCT...G.A......C......C..T | ========== ====== ====== ====== ===================================== ======================================================================== ================== 48 37 95.9 37 ATTTCAGCAATTTCGGCTCGTTGAAGAGCACTGAAAC # Left flank : CCTGCAATCGCCTCGCCAGGTCGTCGGCAGTGCGCGCAGGCAGGAGATTTTGCTGTGAAAGCGCATAGTTCAGCGCTCCGTGCAAAAGATGCACCCATTTGCTTACGTTTGATTGGCTCATTTGAAAGAGGTGTCCGTGCATCACTTGCGTTGGGTTTTGTTTTAAGTAGGTCAAAATAAAGAGCAATTTATCTTCTGTTGTCGGAAGCGGCGAGTTTGCATACGAGACGTAGCGACGACAATATCGGACGCGGCCATCAATCGTGCGACGTTTCATATACGCTTCAAATGCGGCGTGGAAGATCGGAACCAGCGCGTGGAACTCTTCAACGGTCAGTCCGGTCATAGAGCGTAATTTCTCCGGATTTTCGATAATGGATCGATACTTACACATCGTTTTTCTCCATTTTCAGATTGTACAAAAATAGTATATCACTAAATCTTGATGATGTCTACTGAAACCGGTCGCTATTTCGGATGATGGTGACGGGCTTCTTCGC # Right flank : TACTCTCTCTTTCCTCTCTCCTGCGCTCTCTTTTCTCATATCAAAGGAACAGCGCGCAGGCAGTGCGAAAGACTGAGGCGCAGCATCTGGAGTGTTTTGTGGCGGATGAAACTATACTTCCTGGCTGCTACCCATGCGGCTGGAGTGCAGTCCGTTGGGCGCAGATGGATGGGATGAACCTTGAAAATGAACCAAAATCTTTCGCCTGTACAGGTTTGCTGGCCATCTTTGCCCGCTCCTGCTCCCTGGCGGAGTGCCGACCTGAGTATGGTTTTGCCTGGCATGGCGCGGGAAAGGCAAGGGGTTGGGCTGGCAGGGGTAGCTGGTCGGTGTGGGTTGGGATGAATCGGCGATTCGTCCTTACAGGAGGGGCATGCTTCAGGCGAAGGGGCGTGGTCTGGATGTGTGGACTTGCCTGCTGAGGGGCGCGGAGGTCGGAGGGTGTTCAGGCAATGGTGTCTTGACTGGATGCGTGCTGTAATAAATTCACGAGATGTGCA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAGCAATTTCGGCTCGTTGAAGAGCACTGAAAC # Alternate repeat : ATTTCGGCAATTTCGACTCGTTGAAGAGTACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 2436731-2427392 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2436730 37 100.0 37 ..................................... GGAGAAGCGCCGCTTTTTCGAGTTGTACCGCGTCTGG 2436656 37 100.0 36 ..................................... GTCAACGCCGAAGCGCGTGAGGTGTCCCACGCGCCC 2436583 37 100.0 38 ..................................... ACCGACAGCACGCGCGGGTAGCATTTCGCCGCCTCCGA 2436508 37 100.0 36 ..................................... TCGCCGCGCGGGATGTTCAGCAGGTTCGGCTCGCCG 2436435 37 100.0 37 ..................................... GACGCGATGCGCATCAACCAGCGCTACCTCGACCTCG 2436361 37 100.0 36 ..................................... ACATCGGCATCAGACCGTTGCCGGTGTGGATGATCA 2436288 37 100.0 37 ..................................... TCAATGGGCTGGTCGGGCTGTGCGATATGACGAACAC 2436214 37 100.0 39 ..................................... CAACACCCCGCGCCGCGTCCGCAACCAGCGCGCGGTCGA 2436138 37 100.0 37 ..................................... CGTCCCGGCGCATCGGCAAGCCTTGGGACGGACTGAA 2436064 37 100.0 37 ..................................... TCGCGCTCAACGAAAACGTCGGCAAACCAAAAACCTG 2435990 37 100.0 41 ..................................... GACCGTCGCCAACTCGATCAGCGTCGGCAGCAACGTCAGAA 2435912 37 100.0 35 ..................................... CTAGGCGCGCAAACGGCTAGGGCTAGCCTATAGTA 2435840 37 100.0 36 ..................................... ACTCGCGGTCAACGCGCGCGCCGTTTTCTGTTCTGG 2435767 37 100.0 40 ..................................... GCTGTTGTTCCATCAGCAGTACCAGTGTCACAACACATCG 2435690 37 100.0 39 ..................................... GTTCGTTGCGGGCGCGGCTTCGCACACCGAATCAATATA 2435614 37 100.0 38 ..................................... TTCGCGCGCGAAACGCGGAAGTCGTTCTCCAGTTCGCG 2435539 37 100.0 39 ..................................... TTGAGACGCCCGTCCCGACCGACGGCGAATAAATGAACA 2435463 37 100.0 37 ..................................... TTTGCCGACCGGATGACAACGATATTCGGGTAGTTGT 2435389 37 100.0 36 ..................................... GGCGGTGTACCGGGGCGCGAATAGTGGGAATGTTAG 2435316 37 100.0 36 ..................................... CGCGGAGGCGGAAGAACTGATTCGCGCTCTTTTTGA 2435243 37 100.0 35 ..................................... CCGCGACGAAGCGCTTGATGTGGTTCAATCGCTGA 2435171 37 100.0 35 ..................................... GAAGAAGAACCGGTCGCTGGCGGGCGCGGTCTCGC 2435099 37 100.0 38 ..................................... GCGTTCGCCCGGCGGCGGGGGAAGGTGTGACGGGCGAT 2435024 37 100.0 35 ..................................... GAACGGCTGGGTCGCGGAGCAGCAGCGCCACCAAC 2434952 37 100.0 37 ..................................... ACGCGCTGCTTGCGGCGCTCGACGACTGGGGCGCAGA 2434878 37 100.0 37 ..................................... ATTGACGGTCGCTGGGAAGCGAACGCTACTATCGAAA 2434804 37 100.0 36 ..................................... CTTGAGCGCGAGATCAACGTGTACGTTGAGACCAAA 2434731 37 100.0 37 ..................................... GTCGTTGTCCTTCGCAACAGCGACCGATACTACGACC 2434657 37 100.0 38 ..................................... TTGACAGACGGGAACTTGTGTGCTAGGCTAACGACCGG 2434582 37 100.0 35 ..................................... GCATCAAGAACTTGAGGACTGGACGAAAGCGGTCG 2434510 37 100.0 36 ..................................... ACGTCGGCGTCGGCGAGAATAATCAAACGCGCTTTG 2434437 37 100.0 36 ..................................... CACTGAATTCTCGGAAGAATTGCGCCGCTTCGTCGA 2434364 37 100.0 37 ..................................... CGTTTCGCGCGCGAACGGCGCGCCGGAACCGGCGACG 2434290 37 100.0 36 ..................................... TCAATCGGACGCACCTCCAACCCCACCGCATTATGA 2434217 37 100.0 36 ..................................... GCGCCGAGGCGCTGCTCTATAAGGCGCTGCGACTGC 2434144 37 100.0 37 ..................................... GGACGCGCCGGCGCTGGGGGTGCGCGACCCGAAGGCG 2434070 37 100.0 35 ..................................... ACCGAATCCGACAAGCCCCGTCCGACAACGGATGG 2433998 37 100.0 36 ..................................... GCGATCTTCAAGTGTGGATGCACCCGCCCGGTCAGC 2433925 37 100.0 36 ..................................... TTTTCGCCGCGTTTGCCCGGCGACCGCTCCTCACGC 2433852 37 100.0 36 ..................................... AGTCGTCTGCGCGCGCTACCTCAACGACGCCGAGAA 2433779 37 100.0 37 ..................................... GCCGCGCGGGGCGTCGGCAAGGAGACGCTGCAGGCGC 2433705 37 100.0 37 ..................................... GCGCGTCGGCGAACCAAAATCCGGCGTTTGTCTGCCA 2433631 37 100.0 40 ..................................... GACGCGATGCGCATCAACCAGCGCTACCTCGACATCGAGA 2433554 37 100.0 37 ..................................... CGGCGCGGGCGCGGTCGATCTCGAAGCGCAATTCCTC 2433480 37 100.0 36 ..................................... TCTGCTTCGTAAAATGCGGTCATTTTGTCGGGTCGT 2433407 37 100.0 41 ..................................... TCAAGAACTTGATTCGACGTTTGGCTTTTGGCCGCAATCAA 2433329 37 100.0 36 ..................................... TCCGGCGCGCCACCAACCGCGCCGCCGCTCGCTTAC 2433256 37 100.0 37 ..................................... GCGGTCGATTGCACGCGCTGGGTGGATGTCGATGATG 2433182 37 100.0 37 ..................................... CGCTAACTCAGCGACCTAAACACCCGCCACGCGCTCC 2433108 37 100.0 36 ..................................... GTCAAGCAACGTCGTGTAGCCGCACTCGGTCACACA 2433035 37 100.0 36 ..................................... CTCACAATTCGTATAATTGCGCTGATGTTCGGAAAA 2432962 37 100.0 36 ..................................... GCGACAAGCGCCATATGATCACCCCCCTTCTGCCAA 2432889 37 100.0 36 ..................................... GTCCTTCCGCGCATCGTCCAGCGTCTGGTAGACGCT 2432816 37 100.0 37 ..................................... TGATACGTTCCTGAGAGCGGTTTATGACCACTATCGA 2432742 37 100.0 38 ..................................... CACTCGACAGCCCAGCGCGCCGCGTCGAACCAGACGGA 2432667 37 100.0 38 ..................................... TTCACCATATTCTTCAGTAATTCGCGGATATCGGCAAA 2432592 37 100.0 36 ..................................... GAAATCTCCGTTGAGTTCGCGGCGAAACTGAAGACG 2432519 37 100.0 40 ..................................... GTCGAACTCGATCCATCCCCACTTTGAGACATCCCTTCCG 2432442 37 100.0 38 ..................................... CTCAACCGGTTGGTTCTGGAACGTCAGCGTTGTCGGTG 2432367 37 100.0 35 ..................................... ACGACCGGAAACCCCGCCGGCGTCGGCGGGGTTCC 2432295 37 100.0 35 ..................................... TCTATGCGCGTCAATTTCGATTCGTACCGGGTTGC 2432223 37 100.0 37 ..................................... CTAGGCGCGCATACGGCTAGCGCAAGCGCGTGGTAAC 2432149 37 100.0 37 ..................................... GTCTGCTTTCGGTACACCAGTAGCCCCGATATGCCAA 2432075 37 100.0 37 ..................................... CTCTCACCGTCCGAGCGTAGCCTACAACGGTCACAAT 2432001 37 100.0 38 ..................................... GTATGTAACATTTTTGCGCACAACAAGACATAGATTCG 2431926 37 100.0 39 ..................................... ATTCGTGATATGATGTTTTACGGAGTTTCACGGTGTTTC 2431850 37 100.0 35 ..................................... TTTTGGACTTCCCACATATAACGTATCACCTCTCT 2431778 37 100.0 36 ..................................... ACAAAAACACCGTCTTTGCTTAGCCCTTTGAACCCG 2431705 37 100.0 37 ..................................... AGACGATACGCGCGGCGAAAATGCGCGCTACCAGAAC 2431631 37 100.0 39 ..................................... CTGTACCAAAACCCTATCATCATAATGCCGATAGCCTAC 2431555 37 100.0 36 ..................................... TACACTTGCTGATACGGCGTATAAGGCTTATCTTGA 2431482 37 100.0 37 ..................................... CTGATTAGTACCAGGGGAGTTGAACCCGTCACTACCG 2431408 37 100.0 37 ..................................... AGATGAACCGCAAGGGCAAGGCAGAGACAGTACGGGT 2431334 37 100.0 37 ..................................... CTGATTAGTACCAGGGGAGTTGAACCCGTCACTACCG 2431260 37 100.0 35 ..................................... AGACGATACGCGCGGCGAAAATGCGCGCTACCAGA 2431188 37 100.0 37 ..................................... TGATTGAGGTTGATTATGGATAAACTGAAAATATTAG 2431114 37 100.0 35 ..................................... GCCTGTACCATTGCTTCATACCTGTGCTGTCGCAG 2431042 37 100.0 39 ..................................... GACATTGTGTGTCAGGCAATGCGTGTACGCGCGCGATAA 2430966 37 100.0 36 ..................................... TTCCCTATCCAAGCGGGCTTGTATAAACCCGCGCGC 2430893 37 100.0 36 ..................................... CCTGAATAATTGCGTTTAGGATTGTGCGGATATTAG 2430820 37 100.0 36 ..................................... CGTCAGGTAGCCGCTAGGCGCGCAAATGGCAAGGGC 2430747 37 100.0 37 ..................................... TTTATCACGTCAACAGGAGAGGATCATATGCGCGTCA 2430673 37 100.0 36 ..................................... GCAATTGCTGGCTACGATCCTAAATGCGCTCTCCTG 2430600 37 100.0 36 ..................................... TTCAACAACGGTAAACCTGAATCTTGCGTACTCACG 2430527 37 100.0 36 ..................................... GGATCGGATCGAACGCGCATTACAGCGCTCGACTGC 2430454 37 100.0 38 ..................................... AACACGGGACTTTGATATGCCTAATCTTCAGTGGCGAC 2430379 37 100.0 36 ..................................... ATAGGGCGTATAACGACGATCCGCCGCTCCGGGTTA 2430306 37 100.0 37 ..................................... AAAATCGCCGGATTTTCCGCAAAATTGGGGCTTGACA 2430232 37 100.0 38 ..................................... ACGACGCGGATGTCTGGCAGCGCGCGGCGCGCTGGGCG 2430157 37 100.0 36 ..................................... AGTTTCTCGACGACGGCGGGGCGGTGTTCCGGAATG 2430084 37 100.0 37 ..................................... CCAGACCTCGATATCAATGATTTTCGGGTCTTGGAAC 2430010 37 100.0 37 ..................................... GTTTCCAGACGCCTATCAACTCGCCCTCGTATTCACG 2429936 37 100.0 39 ..................................... AATCCGCCAGCAGCGCGTCGACGTTGACCGTTACGCCGA 2429860 37 100.0 37 ..................................... CTGTTCAAACCGCGAGCGTTCGGCGTCGGTCGGTCGA 2429786 37 100.0 36 ..................................... CGCTCCTCACCGACGGTTCCCAGAGGTGCAAGAGTT 2429713 37 100.0 35 ..................................... GCCGTCTTTGCTTCGCCTCACGCTCAGACGGGAGT 2429641 37 100.0 37 ..................................... TCCGGCGCAACGAAGGCGCTGCGGAAGTCGAGATCGG 2429567 37 100.0 35 ..................................... GGGGCGACAACCACAGCGTCACCGCCGCGTTGATG 2429495 37 100.0 38 ..................................... TGAGATCACATTGACAGTGCTGTACAACGAGGACTCAA 2429420 37 100.0 36 ..................................... TCGTTGTCTTTCAGCAGTGTCACAACACAGCATCTT 2429347 37 100.0 36 ..................................... GTTGTAACTTCCGACGACGCGGATCGACCGCGCGGC 2429274 37 100.0 36 ..................................... TTGCACAACTGACGCAACACGCGCGCCGACGGAACC 2429201 37 100.0 36 ..................................... GGGATGGACGAGCGGCGGGTGGCGCTGATGGTGCGT 2429128 37 100.0 35 ..................................... CCAGACTTCGACGAGTGCGACGGCTTCTGTGTAAT 2429056 37 100.0 39 ..................................... AACGGTTGGATTGAGATCGTCCACATCGCACCCGTCCGC 2428980 37 100.0 37 ..................................... TCGCGCTGGTGGAAGTCTGGCAGCGCGGCGGGTTGTT 2428906 37 100.0 35 ..................................... TTCTAACCGGATTTCGGTGTTGTTCGCGCGACGCG 2428834 37 100.0 35 ..................................... CGCCGCGCGGTCTATCGTCTGAAGTAACGCATCAA 2428762 37 100.0 37 ..................................... GATGCGCGATTCCGGCGTCAAGCGTATCGAAAACGTC 2428688 37 100.0 37 ..................................... CTCGCCGAGAACCCAAGTATGAAAGCCCTTCGCGCGC 2428614 37 100.0 35 ..................................... CCAGATGCGGGATCGTCCGGTCGCGCCGAACTTGC 2428542 37 100.0 36 ..................................... TGGTATAATAAGAATGGAGGGGGCGGAGAGCGCCCC 2428469 37 100.0 37 ..................................... TTCGGGCGAGGCGATGGGCGCGGGCTGTCACAACACG 2428395 37 100.0 36 ..................................... ACAAACCCATCCACACCGAAGCGCGTGAGGTGACCC 2428322 37 100.0 36 ..................................... TCGCCCTTTCGCAATCGCCGCCGGTCTCCGAAAGAG 2428249 37 100.0 38 ..................................... AGAAACTCGTACACCGGCGCGGTTCGTTCCGCGTGTCG 2428174 37 100.0 36 ..................................... AACTGGTGTTGATACTGCTCCGGAAGATGTGTTCCT 2428101 37 100.0 38 ..................................... GGTGCGCCCCGGTCTCGACCCGCGAACTTCTCGTATTT 2428026 37 100.0 38 ..................................... CGATGTATCGACTTGTGATACATCCTGGCGCGCCGTAG 2427951 37 100.0 36 ..................................... CCGACGCGCTGGCGATCCAGTCGCCGTTACCGACGC 2427878 37 100.0 35 ..................................... GTCACGCCGGACTAAGCGCGCTCGATTACGTCTGG 2427806 37 100.0 36 ..................................... TCCGTCTTTCACCAACCAACCGCCAGTACTATACTT 2427733 37 100.0 38 ..................................... CGCTCGCGGGCGAGATTGATGAGCACGCCGATCCCGCT 2427658 37 100.0 38 ..................................... ATGTTCCGCGCATCAACCTCGATGCTCCAGCGGGCGAC 2427583 37 100.0 43 ..................................... GCCTGAATAGCCTAATTGATAGACAATAGACGATATTTCAGGG 2427503 36 81.1 36 ...TC..C.....T....-.T.........T...... TTGTCACCGTATTGGTTTCCGCTCGCCGACAGGCAA CT [2427495] 2427429 36 81.1 0 ...TC..C.....T....-.T.........T...... | CT [2427421] ========== ====== ====== ====== ===================================== =========================================== ================== 127 37 99.7 37 ATTGAGGAATTTTCGGCTCGCTGAAGAGCACTGAAAC # Left flank : ATCGCCAACCCGCTGGCAACCATCCTGAGTGTAGCGCTGCTTCTGCGACACTCGCTGGGGCTGGAGCGCGAAGCGCGCGCCGTTGAAACCGCCGTCTGGCGCACCATCGAGGATGGCATCGTCACCGCCGACATTGCTGCGCCAGATGAGCGCCCCGCAACCACGACCGACGTCGGCGCGGCAGTGGCAGCGCGGGTCATCGTCGGGTAACTGGTATATTCGGACGATATGCGCCGCGCTTTCGCAACTCGTCGGGCAAAGGTCGAAAAGGCGGGTCGTTCAAATCGATGTGTCAACGATTCTATCGACGTTTTGGGCAGCAGAAAGGGAAGGAGCGTGTTTCGCAACTTGACGCGGTTTTGGCGCAAGAATCGGGTTGCGAAACGCGCCCGTTCATGCTAGTATACGGGTGTCATGGCGACGCACCAGGAAGGCTCAGGAACGACGAAGCGTGATCGTCGCAGTCGGGAATATGGATGGACGCAGGTGCGAGGGTCGGG # Right flank : CCAGCAGGTTGATCGGCTATCGCATATCGCCTATCGGCTATCATCTATCAGCTCTCGGCTATCACCTATTACTACAGTTGGAGTTGTGGTATGCTCTACCTCTGTGGCAAACGAACTGAACGGAGGCATGGAAGATGCCGTCAGCATCAGACGACCTGCGCCCCCCGGATGAGCGGGATATTGACGTATAGCGCCGCTATTGGGGCGCTGTGGTCAATCGCCTCCGCACCGCGTTTGCGCGCTCAAAGTCGCAGGAGAGCGCAATGGCCTATCTGGGCGGCTTGCTCAGCCCGGCCGAGCGCAAGAATGGCTGGCAACTGGCCGAAATCATCGGCCATCCCAACCCCTATCGCGTGCAGGAGTTGCTGAGCCGGGCTATCTGGGACCCCGACGAGCTGCGCGACCGGCTGCGGCGCGATGTGCTGGACTATCTGGGCGACCCAGACGCGATTGGCGTGCTGGACGAGACGGGCTTCCTCAAGAAAGGCGCCACGTCGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGGAATTTTCGGCTCGCTGAAGAGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 3151615-3158049 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================= ================== 3151615 34 100.0 39 .................................. AGCACGGGGGCGGGGTCTACCCCGCCCGATCCAATCTGG 3151688 34 100.0 41 .................................. AGCCTGGAGGGACGGGTCGTTTGCCAGGATGTTCCTAAGGC 3151763 34 100.0 38 .................................. AGCTTCGCACCACGCCCGCCACACGGCGGCGATTCCGG 3151835 34 100.0 40 .................................. AGCTCAGTGTTGGCTCCGGACCAAACTGCGGACTGTGCGT 3151909 34 100.0 41 .................................. AGCCGCGCTCGCTGTCCTCGCCGCATGGCGGGAAGCAGCGG 3151984 34 100.0 40 .................................. AGACGAGCTCACTCTCGGAGATGCTCCGCGCGATCTCGGT 3152058 34 100.0 42 .................................. AGTGACCTGGCGCCGCCGGACGCGGCGGGTGCGGCGGACGCC 3152134 34 100.0 38 .................................. AGTTTGGTTCGCACTCGTAACCCGGATATGGATCATAC 3152206 34 100.0 40 .................................. AGTCCTGCGACGTCAGCGACAGCGCGACGCCCAGCGCCTG 3152280 34 100.0 41 .................................. AGTTCAGCGCCTCCGCGTCTCCCTCGACCTTCTTCAGCTGA 3152355 34 100.0 41 .................................. AGAGCGCCTCAATCAACGTGCTCTCGTCGACAACCTGCGGA 3152430 34 100.0 41 .................................. AGACCTCCTTCTTGTTCATTTAGAAGTGCAAGCCAGAGCGA 3152505 34 100.0 41 .................................. AACCCGCCCGTCTCCGCGACCAGGCGCTGCGCCTGGTCGCG 3152580 34 100.0 41 .................................. AACTCGTCGGAGACCGCGGCCAGTTCTTTCCGAATGCGTTC 3152655 34 100.0 41 .................................. AACATTAACGTTCGGTCCCATTCCATATATACGGTCCGTGG 3152730 34 100.0 40 .................................. AACAACACTAAAGTGGAGGGAGGCGTATAAGTGACTACGC 3152804 34 100.0 40 .................................. AACCCGCATCCGACTCGCACTTGGCTAACTTCGCCTGAAG 3152878 34 100.0 39 .................................. AACGATACCGGTCCGTCATGTTTCTCCTCCTTTGCCCGC 3152951 34 100.0 40 .................................. AACGAACGACCCGGCGCTCGGCGTCGCGCGCGCGCCTCTC 3153025 34 100.0 39 .................................. AACGCGACGCCGAGCGCCGGGCCGCGCGGCTTGGCGCGG 3153098 34 100.0 40 .................................. AACAGCGGACCGCGCCGCGGTAGACCTCCACGGCGTCATC 3153172 34 100.0 40 .................................. AACAAGACGACGAGGAAGATAGCAGCCACCAGGCATCCTT 3153246 34 100.0 39 .................................. AACCAACTCGCGCCGCCGCTTCACGCTGCGCGCGCTCCG 3153319 34 100.0 40 .................................. AACACAACGTTGCAGCGTTCCTCGGCGAGGTCGGCTCCGA 3153393 34 100.0 40 .................................. AACCGGACCCCCCAGGCGAGGGACAACCTCACGCCCTGCA 3153467 34 100.0 44 .................................. AACGTACGGCGGGGAGATCCCCATGGCCGGCGCCCCTCCCCGGA 3153545 34 100.0 42 .................................. AACACGGTCAACGACATGCCCGGTCTTCACCGTCCCCAATAT 3153621 34 100.0 38 .................................. AACAAATAAAAGAAGAATGCGTGTTGTGACGGCGAAGG 3153693 34 100.0 41 .................................. AACTTTCGATTTGGTTCTCGAGTCGCTGGCGACGCTCTGGA 3153768 34 100.0 40 .................................. AACAGGCACGCCGTGCGGCGGCGCCAGTCTTGTCCAGCTG 3153842 34 100.0 43 .................................. AACAACTAGCCAAGGCGGAATTTGATGCCGAGGCGCTGCTGAA 3153919 34 100.0 39 .................................. AACAGGGGGTCCCCCCCCACAGCGTTTCGCAGCCGCTCG 3153992 34 100.0 41 .................................. AACTTTCGCAGCCGCTCGATGATCGCCTCCGCCTCCGTGAG 3154067 34 100.0 41 .................................. AACGATATGGATCTATTTTTTGGAGGTACGCGGCGTAGCAT 3154142 34 100.0 38 .................................. AACTTCGCCCGCGCTTCCGCCTCGGCCCGAGCGGCCGC 3154214 34 100.0 40 .................................. AACTTCTTTGCCCCGAAACCCCGCCCGCCTTCGGCAGACG 3154288 34 100.0 40 .................................. AACTTTCTTCCGCCTTCTTCTCTTCCGCCTTCTTGTTCTT 3154362 34 100.0 43 .................................. AACGCTTCCTGCTGCGCCCGTTGCTCTGCCTCCGCGCGGGAGA 3154439 34 100.0 41 .................................. AACCTGCCTCCGCGCGGGCCGCCGCTTCCTGCTGCGCGCGC 3154514 34 100.0 40 .................................. AACTTTTCTCCTCCTTGCCCCCCCGCCGTGCGGCGGGATG 3154588 34 100.0 41 .................................. AACTAAACTCATCTGGCGTACCCAGAGTCGAGTGAGTGCGA 3154663 34 100.0 41 .................................. AACGCTGCCAGTCGGTTCCACTGTCTGGTAACCGTCTTCCA 3154738 34 100.0 38 .................................. AACCTTCTCGCTTTGGATGACGACCTTAATCCTCCCTC 3154810 34 100.0 42 .................................. AACCTGCTCCTCCGCAACCGCACGGGCTCCCGCCTCCGCCCA 3154886 34 100.0 44 .................................. AACGTACGGCGGGGAGATCCCCATGGCCGGCGCCCCTCCCCGGA 3154964 34 100.0 42 .................................. AACACGGTCAACGACATGCCCGGTCTTCACCGTCCCCAATAT 3155040 34 100.0 38 .................................. AACAAATAAAAGAAGAATGCGTGTTGTGACGGCGAAGG 3155112 34 100.0 41 .................................. AACTTTCGATTTGGTTCTCGAGTCGCTGGCGACGCTCTGGA 3155187 34 100.0 41 .................................. GACTCCGCCTCCTCCACGAGCGTCCACGCCGGGCGCGCCTC 3155262 34 100.0 39 .................................. GACGCGAGGGGGAGATCGGGCCGCGCAGCGGGCGCAGAT 3155335 34 100.0 40 .................................. GACGCGTCGTCCTCCTCGCCCCGCAGCCGGTCGAGGAGGT 3155409 34 100.0 41 .................................. GACCTGCAGCAGCAGGGGGGGCGGGATCACGAATGATCCCA 3155484 34 100.0 39 .................................. GACCAGACGATATCCTCGTCCGCGCCGGCGACCGCGCGC 3155557 34 100.0 40 .................................. GACGTCGCCAGACGCTGCTGGCGCTCGATGCGACCTGGAC 3155631 34 100.0 42 .................................. GACCCTGTTTTGTTGCAGGTACGCCTGTGTATACAGCAAATG 3155707 34 100.0 40 .................................. GACTAGCTCACGATTGTACATTTAGAGTGCATCGCCAAAG 3155781 34 100.0 40 .................................. GACATAGTCACAACTAGGCTAAGGCACCCTTCAAGCGCAA 3155855 34 100.0 38 .................................. GACCTGGTGGGGTTAATCGACCGGGATCCGGAGCGCAG 3155927 34 100.0 40 .................................. GACACCGCCGCCCTTCGCACTCGTAACCCGTACGTGTAAC 3156001 34 100.0 41 .................................. GACCGGCTTCCCGCGCCGCCTCCGCGCGCCACGCCCGCCAC 3156076 34 100.0 42 .................................. GACAACGCGCCCCCGGCGGCGCCGGGAGCGGGGGAGGGACAA 3156152 34 100.0 44 .................................. GACTCCTTGCCCCCCCGCCGTGCGGCGAGGCGGGCATTCAACAT 3156230 34 100.0 38 .................................. GACACGATGTCGCGGGAGGACCTCGCCCGATCCAGATT 3156302 34 100.0 40 .................................. GACCTCCCGGACCCCCTCTCCCGATGCCGCAGCATCATTG 3156376 34 100.0 42 .................................. GACACGGCGAGGCGCGCCGCGGACCCGCCGGCGCGCGCCGGA 3156452 34 100.0 41 .................................. GACCTGCGAGACGGCGTCTCTCAGCACAACTAAGGCGTTCC 3156527 34 100.0 38 .................................. GACTCGACGAGCGTGCGCTCGTCGACACGCTTCACGAT 3156599 34 100.0 39 .................................. GACGCGCCTGCGCCTCCGCATGCGCCCGCCATACGGCGA 3156672 34 100.0 41 .................................. GACTCGCAGACGGCGTGCCAGAGGTCATCGTTGAGCGCCAG 3156747 34 100.0 38 .................................. GACAAGATCTCCTCGATGTCGTCCATACTCCCTCCTTT 3156819 34 100.0 42 .................................. GACACGGCGAGCGCTGCGACAACCAGCGCCGTCGTCGAGAGA 3156895 34 100.0 41 .................................. GACTGGTGGTCCTCCTTGCTGCCCCCCGCCTTGCGGCGAGC 3156970 34 100.0 41 .................................. GACGAGATGATGACTCCGACTTCCATGTGGTGGTCCTCCTT 3157045 34 100.0 37 .................................. GACACGGGTCGTTTTCCAACACGTGCCGCAGGCGCTG 3157116 34 100.0 40 .................................. GACGTCTCCGGCGCTGCCGCCGCCGCCGCCGCCGCGTCCG 3157190 34 100.0 41 .................................. GACTAGACGAAGTGCCTTGAGGGGAAAAGGAGCAAAGTCAA 3157265 34 100.0 41 .................................. GACAACTATCCGTCCAACTTACTAACTCACCAACAGCCTTA 3157340 34 100.0 41 .................................. GACATTAGCATAAAAATAACCGCTGCTAACGCAGCCAGCAA 3157415 34 100.0 40 .................................. GACATCTAATATAAGGATAGCGTCGTCTAATCGGGATACC 3157489 34 100.0 41 .................................. GACATGACTTCCATCTCTTTTTCCTCCTTGCCCCCCCGCCT 3157564 34 100.0 40 .................................. GACTCGGAGGTCGCGTCCAGCCCCTTGCGGAGCTGGACGG 3157638 34 100.0 40 .................................. GACGAAACCCCGCCCGCCTTCGGCGGGGCGGGGCTGACAC 3157712 34 100.0 45 .................................. GACCCCCGTTGATCCCACATTGGAGGTTGCACCCCCCGAGTCGAA 3157791 34 100.0 39 .................................. GACGCCAAGGACAACCTAACTCCGTGGAGGTCCGGGTCC 3157864 34 100.0 42 .................................. GACCGTCGCGCGCCGCAAGCGCGGCGACGACGGCGACAGCCT 3157940 34 100.0 42 .................................. GACACGAGGATGACAAGCCGCCACCCGGGCGGCTCGTCGAGA 3158016 34 94.1 0 ..............................A..T | ========== ====== ====== ====== ================================== ============================================= ================== 87 34 99.9 40 GAAGCGACCACTGCCCCGCAATGAAGGGGATTGA # Left flank : GCGGCAGCAGCCAGCCGAGGAGCAGCAGGCGTTCGGCGACCGAGCGCGGCTGCGGGTCGCGCGCCAGTTGGCGCCAGGGACGCACCGCGCCATAGCGCGCCGTGAAGGTCGCCGCATCGAGACCGCGCCGGCAGCGGCGCAGATCGGCGAGCGCAGCACGGACATCGGCGTCGAGCGTGGCGTAGACGGCGCGCACGGCGGCGGGGGTGCAGAGGGCGCGGCGCAGGCGGCGGAGGCGCTCATCGGCGGAACCGGCGCGGGGGAGGGAAATGCGATGGGTGCGGGCGATCAGGCGCTGCGCGACGGCGGGGGCGGCGGCGAGCCAGCGGGACCAGCGATTCATGCTTGACCTCCGGGGAATGACCTGGTATACTGCACGTGTCAGGGAATGATGCCGGGTTTGGGTCAAAACGGCAAGCGCGTGCAGATGATGTGGTCGCACGGAAGTCGCCTCTTCCGCAGCAGGACGCCGAACAATGAGGAGGGCGTTGTGCGAGGGA # Right flank : TCAGGCGCAGCGTGGCTACGCCCCTGTCGTGGCTCGCGGGGGCGGGTTTTTTGAAAAGCCCTTGTGCCCCTTCGCTCGTTCTGGGCATCAGGACGCCCAGACTCCCCTTTCTCCCCGTGTGGGATTCAGAAGGTAGGGCTTACAGGAGTAGGTTTTTGGGGAAGCCCCTGCGTGCCATCTCCCGTTTTCAGGCATCAGGACGCCCAAACTCCCCCTTCTCCCCGTGTGGGTTGAAAGGGGGGGGATTCGCAGGCAGATTGTCAACCGTTTCCGTTCCACCGAACGCACGGGCCGATCCGTCGGTAGCATGATCATGGAAGGATCGCGAGACACGGAGGATGGTATGTCCCGCACGTCCACAGAACGGTTGCTGCAGCAGCAGATCCAGACCCTCTTCCCGCGCTTGTCGCGTCACCGGCGCCGCGCCCTGGCCCGCTGGGTCTTGGGCGCCCTCTTGGCGGGGAGCGCCAATCGTCCCGCGCTGGCGCCAGCGCTCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCGACCACTGCCCCGCAATGAAGGGGATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 3786322-3781829 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 3786321 37 94.6 38 ...................................CG GGGGCGGGGTCTCCCCCGACCGATCCGGATTGGATCGA 3786246 37 97.3 39 ...................................C. TCCGCTGTTATCAGGTAATCCGCGCCCCACTTTGTGCGA 3786170 37 97.3 36 ...................................C. GCTGCCGCCACCACAAAGATGGTACTCATTTTTCGA 3786097 37 97.3 39 ...................................C. ACGGCGGGTGGGCAAGGAGAAAGGAAATGGAAACGATGA 3786021 37 94.6 39 ...................................CG GCGGGAATGCAAACGGCTCGCCCCCCCCCTTCGGGGGGA 3785945 37 97.3 35 ...................................C. GACCCGATGGCGGTCGACGCACTGCTGGTTCCCGA 3785873 37 97.3 37 ...................................T. GAACTGGCATTTCTCCAGCTTCCTCCGGATCTCGTGA 3785799 37 94.6 39 ...................................CG GAGATACGCTGGCGCTCCGGGTGCGGCTCCGCCACGCGA 3785723 37 100.0 40 ..................................... CTCGTCAAGGCACGCTGCGTATGCTACGCCGCGTACCTCC 3785646 37 100.0 38 ..................................... TCGAGGGGGTGGGAGGGGGCGCGCCGCCGCCGCCGCCG 3785571 37 100.0 37 ..................................... TAGACTCATACTGCGCCTCTCCTCCAACTTCGCGCTG 3785497 37 100.0 37 ..................................... GTTCCGATACGCGTCGGCGCGGGAATCCGCGAGGTCG 3785423 37 100.0 37 ..................................... GCAGCGCGCCGTTCGGCGTCCCGCCGCGCGCGCGCTT 3785349 37 100.0 38 ..................................... ATTCCAGATTAAAAAACGGAGATGGGCGAACTGCTAAA 3785274 37 100.0 38 ..................................... ACGAGCTCGCCGCCAAGGCGCGCGGCCCGCGCCTCGAG 3785199 37 100.0 37 ..................................... TCGAGAGCTGCATCGAGCGCCGCCCGGTAGGTGTCCC 3785125 37 100.0 38 ..................................... CTCCAGCCCCTTTCGAAGCTGCTCGGCCTGCTCCCGGA 3785050 37 100.0 36 ..................................... GTGGGTCAGGAGAGCCAAACTTACTCAGTTTGGAGG 3784977 37 100.0 36 ..................................... AGCATGCCCTGCCCGTCGGCGCGGCGCATGGCGAGG 3784904 37 100.0 37 ..................................... CGGCACGCTCAGATCGAGCGTGTCGGTGCGGATTCCA 3784830 37 100.0 38 ..................................... CGGATCGCCCTCCCCCCTTCGGGGGAGGGGGGCGTTCC 3784755 37 100.0 37 ..................................... AATCACATCTGCGACCGGGGCGATCGCGTCGATAATC 3784681 37 100.0 37 ..................................... ACAGCGCGGCGCCGGGGCGCGGGAACGCCTCCCGCAG 3784607 37 100.0 40 ..................................... GGCGCCAGGCGCTGCTGGCGCTGGATGCGACCTGGACGGA 3784530 37 100.0 39 ..................................... TCGCCGAACCGCCCAAGCGGGCGGATCGTGAGGCGGACG 3784454 37 100.0 37 ..................................... GAGAGCCGCACGTTGGTCACGAACCCCGCGACGTGCC 3784380 37 100.0 38 ..................................... TCGAGGGGGTGGGAGGGGGCGCGCCGCCGCCGCCGCCG 3784305 37 100.0 37 ..................................... ACTGCAACATCTAGTATAAAAACTAGATCGTCCAGCC 3784231 37 100.0 36 ..................................... ACCCGTAGTTGTCCAGCCAGATGAACCGGCGGACAT 3784158 37 100.0 37 ..................................... GTGGTCGGTGAGGTGGTCGGTTCGATCATGCGTTCCT 3784084 37 100.0 37 ..................................... ATGAAGAACATAAAAGACGCTACCACATAGGGAACTA 3784010 37 100.0 37 ..................................... GCGAGTGTCTTCTCGTCCACGTTCCGGTGAACGTCGA 3783936 37 100.0 37 ..................................... TCATCGACGGCGGCGGCGCGGACGGCGGTCGCCCATA 3783862 37 100.0 36 ..................................... AAACCCCCTCCCAGGGAATGCGTTGTGACAGCGCCC 3783787 37 100.0 37 ..................................... CCGCACCATTGCGAGCGGAAGTTCAGTCTCCCGCGTC 3783713 37 100.0 37 ..................................... GCTCGTCCGGCGACTGGTTTGACTGGTTGTCGTCCAT 3783639 37 100.0 35 ..................................... GTACAGTGTGTACAAAAAGTACACGCCCCAAGATT 3783567 37 100.0 36 ..................................... CTTGAAAGGAAATAACATCCGAAATTTCCGGAAATC 3783494 37 100.0 38 ..................................... AAGGAAAACAATCACCGGCACAAAAGGGGCTAAAAAGG 3783419 37 100.0 37 ..................................... AAAAAACCCCCGTTACTAACGATACTATGGTCTGCAG 3783345 37 100.0 38 ..................................... AAAAAGGCCTCCTGCCAGGAGAGCAAGCATCCCGAGGG 3783270 37 100.0 40 ..................................... AAACTTGGCAAACCCTGCAATACGACCTGTAATATCGAGT 3783193 37 100.0 40 ..................................... ACGTAGGCTCATCTGGCGTACCCAGAGCCTTGTAAGCGGA 3783116 37 100.0 39 ..................................... ATGAATATTCGGGTTCATATGTTCTCCTTTCGTTGCGCG 3783040 37 100.0 38 ..................................... ATGACTCATCTCATACCTCCTCTGGCGGGCGGCGCGGC 3782965 37 100.0 34 ..................................... AAAACAGAGCTTCCATTTTTCCTCCTTGCCCCAG 3782894 37 100.0 36 ..................................... CTTGCGCAATTCGATCTCCTTCTGTGCCCGCGCTTG 3782821 37 100.0 35 ..................................... ATGACGGTTCCCACGACCTCGGACCCACGGTTTCC 3782749 37 100.0 38 ..................................... AAGATGGGCCAGTCGTTTAGACTTGAATCCCATAATAG 3782674 37 100.0 37 ..................................... TTCTTGTTGGGGGAGACCCGGACCCCCCAGGCGATGG 3782600 37 100.0 38 ..................................... CCTTGAAGGGCGTGAGATTGTCCATCGCCTGGGAGACC 3782525 37 100.0 38 ..................................... CAGTTTAAAATCGTCCCCCAAGGACGGCGTCTGGAAAG 3782450 37 97.3 38 ..................................G.. GGCGAGCGCGGCGGGGGGCGGGGACTACTAGTCCCCTT 3782375 37 97.3 37 ..................................G.. TTATAAACGATACGCACTCGGGTCCAACTGTTTATCA 3782301 37 97.3 36 ..................................G.. TCGTCGTCGTCATCGTCCTTCGGTCCGCCAAGATAA 3782228 37 97.3 37 ..................................G.. GTGGAGGTCGTACCTCCACTCCACCACCCCCCAAACA 3782154 37 97.3 35 ..................................G.. ACGTCCGCGTCGTCCGGCGCCTGCGCCAGGCAAGC 3782082 37 100.0 38 ..................................... AAATTCAAAGAACATTTTTCTTTCCTCCTTGCCCCCCG 3782007 37 97.3 105 ..................................G.. CGTGCGAGGAGTGAGGGAAGAGGAGTGAGGGGAGAGAGAAGTGACCACTGTCCGCAGTGCAGAGGATGATAGGGGCGCGGCGCCGACGGCGCCAGCGCACGCGCG 3781865 37 78.4 0 ................T....G.C....A...ACCC. | ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 60 37 98.9 39 GAAGCGACCACTGCCCCGCAATGAAGGGGATTGAAAC # Left flank : GGCAGCAGCCAGCCGAGGAGCAGCAGGCGTTCGGCGACCGAGCGCGGCTGCGGGTCGCGCGCCAGATGGCGCCAGGGGCGCACCGCGCCATAGCGCGCCGTGAGGGTCGCCGCATCGAGACCGCGCCGCGCGCCGCGCAACTCGTCGAGCGCAGCACGGACGTCGGCGTCGAGCGCGGCATACACGGCGCGCACGGCGGCGGGGGTGCAGAGGGCGCGGCGCAGGCGGCGGAGGCGCTCAGCGGCGGGACAGGCGCGGGGAAGGGAAATGCGATGGGTGCGGGCGATGAGGCGCTGCAGCGCGGCGGGGGCGTCGGCGAGCCACAGGGACCAGCGATTCATGCTTGACCTCCGGGGAATGACCTGGTATACTGCGCGTGGCAGGGAATGATACCGGGTTTGGGTCAAAACGGCAAGCGCGTGCAGATGATGTGGTCGCACGGAAGTCGCCTCTTCCGCAGCAGGACGCCGAACAATGAGGAGGGCGTTGTGCGAGGGAGA # Right flank : TTCCACAGGCGGGCTGGACAGGAGCAGGCTTTTCGGCAAGCCCCGGCGTTCCTTCGCTCGTTTTGGGCTTCAGGACGCCCAACCTCCCCCTTCTCCCCGTGTGGGAGAAGGGGGCAGGGGGGATGAGGGGCAACAGCGCACGGGAATGCAGAACATCGCTCATCTCTCCCAAAAACTCTACACCTGAGAGCAACCCCTCCCTCTCTCAAACCCGCCAACCACCGCGTGCCGCAGCGGACGGGGCAGCGTCCACGAAGGTGGACGCCCGGCGGAACGCCCCCACGGCGCGATTTCCAATCGCCAGCCCCTTCCCCGGCGGAACGCCCGCACGGCGCGATGTCAATCGCCAACCCCTCCCTCTCTCAAACCCGCCAACCACCGCGTGCCGCAGCGGACGGGGCAGCGTCCACGAAGGTGGACGCCCGGCGGAACGCCCCCACGGCGCGATTTCCAATCGCCAGCCCCTTCCCCGGCGGAACGCCCGCACGGCGCGATGTCAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGCGACCACTGCCCCGCAATGAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 7 3854177-3854510 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3854177 29 100.0 32 ............................. CACCCCAACGCGAACGCGCGTTCTGACCAGTC 3854238 29 100.0 32 ............................. CGTTTTCCGCAAATTATTGTCGCTGTGTTGCA 3854299 29 100.0 32 ............................. TATGGACAATCTGTTGCCGGACATTGACGTGA 3854360 29 100.0 32 ............................. TTCGGCGACGCGCCGACATTGGCGGAGTGGAA 3854421 29 100.0 32 ............................. GTTCGCCCGGTGCGCGCGATGCGCAGGGCGCA 3854482 29 89.7 0 ............T...G...........C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 CACCGCTCCTCGCGCACGCGGTTACAGCG # Left flank : ATAGCGGATTTATTTCTCAATCTCCATCAGCCCCACGGCACGAGGCGCATACCGGATTATAGCAGTTCTCACAGAGGTTGAACCTGGCGGACGAGGTTGAACACTCCCGGAATCGCACTCCCCACAAGGCGACCGAAATGAATTTCGGTCTACACTCCGCTGGCAGCGGGCGCCTCGCGCGACACGGAGGTTGAACACTCCCGGAATCGCACTCCCCACAAGGCGACCGAAATGAATTTCGGTCTACACTCCGCTGGCAGCGGGCGCCTCGCGCGACACGGCGGATAGGAATAATGGTCAATGTATCTGAGAAATGCTGTAAGTTCTCAATATCTATGATGCTGCGGGATGGCGTGGAACGCATTGCTGCGCCCCTCCGGCGGCAGAGGTATGCATCATCAATGGCGCTAGTATGCTAGCATACTAGCACTGCGTGGCTCTACCTGCTCCTTGCGCATGCAATCTGAACGGCGTTTTTCAGCGTTTCTCGGAGTCGTGGT # Right flank : CTATCTCCCCCCAGGATCGTCGCCACAAAACGCCGCCCCTGATCGGTCAATATAAGCATGCCATTCTGCTGCACCAGCAAGCCGCGCTGTTCAGCACGACGCACCACCCGTTCCGTAAATGCGGGCGCCCAGTTCAGATGTTCGCTGAGATGCGCAGCCTGACACTCAACCGCTGCCTGCGCCGTTGCCTGGTGGTGCAGCAGATGCACCGCCAGCATCGCCTGAGCAAACTCCCATCGCTGACGGATGCGCCGCAATACCTGCGCCAGCAGACCGCGTTGCGGGGCAAACATCCATGCCAGACAGAAGATCAATCCCGCCATCACTGCCATGGCGCCGGCAATCGACGCATTGAGCGCGAATGCCGCCCAGCACCCCAGGCTTGCCGCCAGCGCGCCAAACAGAGCGCTCAATGCCAGCAGACGCGACAAACGATCAGTTAACAGATAGGCGGCAGCCGGCGGTGCAACCATCAATGCCACGACCAGCACCGAACCGAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACCGCTCCTCGCGCACGCGGTTACAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 5441686-5434247 **** Predicted by CRISPRDetect 2.4 *** >NC_009523.1 Roseiflexus sp. RS-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 5441685 33 100.0 34 ................................. ATACTCGTAGATTACCTTCCTCCCCTCGGCATAG 5441618 33 100.0 34 ................................. CTCAAGGTTGCGGAACCGGAAGATGTGTCCGTAG 5441551 33 100.0 33 ................................. TCCACTCTCCGTCCTGTAGACGTAGTACGCTGT 5441485 33 100.0 34 ................................. AACTGCGCCAGCGTCGCGTACATCCGTCACCTCA 5441418 33 100.0 33 ................................. GCCGAAAGCCGCGAAGGTGCTTGAGGCGCTGGC 5441352 33 100.0 35 ................................. CGCGTCCTCATCTCGGTTGGTATGTCGGGGTCTGT 5441284 33 100.0 33 ................................. TTCGGTCATTGCGAACCACGTCGTCGTGTTGGT 5441218 33 100.0 34 ................................. GTCTGGCGCGAGTATGAAGGACAGTTGATAGGGA 5441151 33 100.0 35 ................................. AAGAGATAAACCGCTTTGGCACTCGTACCCATTAT 5441083 33 100.0 34 ................................. ATCCGGCGCGCGAACAACACCGAGATACGGTTAG 5441016 33 100.0 35 ................................. CGGCATCTCGCGCTGTCAAGCGAGATCAAAACCGT 5440948 33 100.0 33 ................................. CGACTCCCGACCGAGTCGGAAAACTCCGTACTG 5440882 33 100.0 34 ................................. CCCCCCCCGAACCTGATGAACCTGTTGCCGCTGA 5440815 33 100.0 36 ................................. ACTCGAACCCGCAATCATCAACACGGATGGAAGCAT 5440746 33 100.0 36 ................................. ATCGCGTATGACGCAATGCGTTCAACCCCCCTGCAC 5440677 33 100.0 34 ................................. AGCGCGTAATCCGAACTGATTCGGCGCGTTCAAG 5440610 33 100.0 33 ................................. CATCCCATACTCAACGCATCCGGGATGCGTCCG 5440544 33 100.0 35 ................................. CATCGTGAACCATCCCAGGTGTGCGACTCGTACAC 5440476 33 100.0 33 ................................. TCGTACACACTGGGAATCATATCGGCGTCTGAA 5440410 33 100.0 35 ................................. CCTGATACGTATACGTTGTACGCGCAACCCGCTAG 5440342 33 100.0 34 ................................. TTCCTGGAGTACTTGCGCAAGATGGCGGATGAGC 5440275 33 100.0 34 ................................. TCCAACAGACGCGCCAAATCGGTACGCCGCCGCC 5440208 33 100.0 35 ................................. TCGCAACGCTGGCGGTGCTGCTGCTGAGCGCGCCG 5440140 33 100.0 36 ................................. AGCAGACGCCGGTTGAGGGGTATATCATTCCGGCGG 5440071 33 100.0 34 ................................. TTTGGAGTAAAGATACAACAGCGACAACCGCTCG 5440004 33 100.0 35 ................................. TTGACGAAGCTTCAGTAGGTACACTCGGTCTCCGG 5439936 33 100.0 36 ................................. GCGCAAACGGCAATCTTTGACCTGGTGAACCGGCTG 5439867 33 100.0 36 ................................. GAGATGCGCGTGGATCGCATCGCCGATCAGCGCCGA 5439798 33 100.0 35 ................................. TGCGCGGGCTGACCGAGGGGTTAGCGCCGCTGCCG 5439730 33 100.0 34 ................................. CGACCGCAGCGATAGAGTACTGCGGGCTGCGCAT 5439663 33 100.0 36 ................................. GTCGCGGGCGTCGTTGCACCGACGCTGCTGCCGGCG 5439594 33 100.0 35 ................................. GACTGCGGGCGGGCAGCGCTGCATATACCGCCGCG 5439526 33 100.0 35 ................................. ATCGAAGTGCTGGCGTTTGAACTGGCGCGCATTGG 5439458 33 100.0 34 ................................. TTCCATCTCGCCGGTGTCGCGGTTGACCAGCAGC 5439391 33 100.0 33 ................................. CGGCGCGATCTGCGCCAAATAGCGGTACTTCGC 5439325 33 100.0 34 ................................. GAGCAATCCGCCAGGCGCGCCGACGGATCGAGTA 5439258 33 100.0 34 ................................. CGCTGCACGCTGGAGCAGTTCCGGCTGCACCGCG 5439191 33 100.0 34 ................................. GTGCACGGCGCCGATGAACCACGGTGCATCGCAT 5439124 33 100.0 35 ................................. GTCGATGGCGGCGGCGACATGGCGCCACTCCTCGG 5439056 33 100.0 35 ................................. CGCGCGTTGACGCCTGCGCGGCGCGGAGCAGCACG 5438988 33 100.0 33 ................................. CCAGCGCCGCGCCGCAGCGCACGGGGTCCCCGG 5438922 33 100.0 35 ................................. CGGCGATCCGCCGCGCTTACGCGCTGCGCGTCGCC 5438854 33 100.0 34 ................................. CACAAGCAGGACGGCGCCGCTGCCGCCCTGTCCC 5438787 33 100.0 34 ................................. TTTGGGACTGCGGCGCGTCACCGGACGGGCGGCG 5438720 33 100.0 35 ................................. CAGCATAGCCGCCGGCGCCGCGCCGGACATCACCG 5438652 33 100.0 34 ................................. TAGCGCTTTTGCCAACAGTTGTACGACCGTCTCG 5438585 33 100.0 36 ................................. TTTTTCTATGCAGTGTTGTGACACTGCTGACAAACA 5438516 33 100.0 34 ................................. CCCAAGCGACCGCCTCGGCGATATACCCCTCCAG 5438449 33 100.0 34 ................................. CGGGGAAGCGCCACGTCAGCGGACTATCGGTGCG 5438382 33 100.0 34 ................................. GGTGATTGCGATCTCCGCGCCTTCCTCGATCCGC 5438315 33 100.0 33 ................................. TTCCTCGCTTTCACCTCAACGGCAAATCCCGGA 5438249 33 100.0 35 ................................. TCTCCGACGTAATCTTCAGTATTCGCGCGTCCGGG 5438181 33 100.0 34 ................................. TCCCCGCGCTGGAGTGGTTACTCAACGAGTTGGA 5438114 33 100.0 35 ................................. CCTCCCCGGAACCCCGCCAGCGTCGGTGGGGTTTC 5438046 33 100.0 33 ................................. GGCGACGGCGATGCGGTTGATGTCGAGATGGCG 5437980 33 100.0 34 ................................. ATCTTTTGGAGCACTGGTCGGAACCCGCGCTGCG 5437913 33 100.0 36 ................................. TGGAGTATACTGCGGGGTAAGGCGATTGTGCCGAAG 5437844 33 100.0 34 ................................. CGCTGCGCACCAACGTTGCAAGCCGCCGCTCATC 5437777 33 100.0 34 ................................. ATCGCCGGATGCACGCACCCCAACAACCCAACCG 5437710 33 100.0 36 ................................. TTCGTACGCACCCGCACTTGTGAAAACCCGCCGGTC 5437641 33 100.0 33 ................................. GTCGGCGAGGTACGCCGTCGCCGCGCCGATTGC 5437575 33 100.0 32 ................................. GTCGAGGACGCGGCAGACCAAGAACTGCTGCG 5437510 33 100.0 33 ................................. GTCCGTCATCACAGACACACCGTATAGCGCTGC 5437444 33 100.0 34 ................................. CTCTCCTCGGCATCGATGTCGACCCTGATGTGAC 5437377 33 100.0 35 ................................. GCGTCGAAAACAAGCGTCCCGATCTGCCGTATCCG 5437309 33 100.0 36 ................................. AAGCCGCAATTGAAGCGCTGGTTGCGGCAGCGCAGT 5437240 33 100.0 35 ................................. TATTTCTATAGAGTGTTGTGACACTGCTGACAACC 5437172 33 100.0 34 ................................. TTCCATCATCTTCCTCCTATCACTGACCTCCCCG 5437105 33 100.0 33 ................................. GCCGCGTCGTCTGTCGGTTCCTCACTCACCGCA 5437039 33 100.0 33 ................................. TGGTCGTTGGACAACGAGGACGCCGGGCGGTCG 5436973 33 100.0 35 ................................. TGCCCGGCGACGACACCAGCAAGTACAAAGTCTTC 5436905 33 100.0 34 ................................. GATGACGACGGGCGCGTCGTCATCCCCGACGCCG 5436838 33 100.0 35 ................................. ATTATACCGTTGAACACCGCGATGTAGCGACTCGA 5436770 33 100.0 34 ................................. CGCTGCGCACCAACGTTGCAAGCCGCCGCTCATC 5436703 33 100.0 34 ................................. ATCGCCGGATGCACGCACCCCAACAACCCAACCG 5436636 33 100.0 36 ................................. TTCGTACGCACCCGCACTTGTGAAAACCCGCCGGTC 5436567 33 100.0 33 ................................. GTCGGCGAGGTACGCCGTCGCCGCGCCGATTGC 5436501 33 100.0 33 ................................. TGTGCGCTCCGATACGTACCCGACGACGATTAT 5436435 33 100.0 34 ................................. GTAGACCAGCCGCCCGTCGCGCACCGACCAGCCG 5436368 33 100.0 33 ................................. GCAGCGCGACTGCGCGGCGCTGAGATGGACGAG 5436302 33 100.0 36 ................................. GGCGACGGCGACGCTGTTGATGTTGAGCTGGCGTAT 5436233 33 100.0 35 ................................. AGGTCGTAGATCACGAACTCCCCCGCCGCGCGCAC 5436165 33 100.0 34 ................................. AACGAAGCGCTGTATCCGGCGATGCGGCGCAACA 5436098 33 100.0 34 ................................. GGAATTATCGGATCATCATCAAGTAGGAGGAGAA 5436031 33 100.0 35 ................................. AAGCGATCAGCCCGACATCCGCCACCGGCGGAATT 5435963 33 100.0 34 ................................. ATACGCCATTACATACGCCCACCGCGCCGCCAGA 5435896 33 100.0 37 ................................. GACCAGCAGCGCGTCGATCCGCCCCGACACCGCGCCG 5435826 33 100.0 34 ................................. ATTATGCCGTTGAACACCGCGATGTAGCGACTCG 5435759 33 100.0 33 ................................. TGCACCTCATCGATGATCAGCGGACAATCCCAG 5435693 33 100.0 34 ................................. CGTTGCTGCGGCAACATAGGCGTCCGCCGCGTGT 5435626 33 100.0 35 ................................. CGCCCACATACGCCTCACCGGAAGGGCGGGACAAC 5435558 33 100.0 33 ................................. TGGCAGGCGCGCCGGATCGTGAGCGGGTGCGAA 5435492 33 100.0 33 ................................. TGTACGGCGTGCATGCCGACACCGGGGCGCCGG 5435426 33 100.0 34 ................................. CGCAACGCCCCGCGCCGCGTGCGCAGCCAGCGAA 5435359 33 100.0 34 ................................. TCCGCCGACGCGCGTATGCCGCGCCACAGCGCTT 5435292 33 100.0 31 ................................. TCAACCGCCAGCAGCACGTTGTAGAGACCGG 5435228 33 100.0 34 ................................. GCACTCGACATCAACGCCGCAGCGTTTACGCCGC 5435161 33 100.0 35 ................................. CGCCAGCAACTGGGACGCATCCGCAACCCGCTCGA 5435093 33 100.0 34 ................................. CTGTTTGTTCGGCGCTGTCACAACACGCTATAGA 5435026 33 100.0 33 ................................. AGTCGTTATATCAGGATCAACATCGACGCCAAG 5434960 33 100.0 36 ................................. AGTACGAATAACCGCCCTTCGCTGAAAGTGCGCCTC 5434891 33 100.0 34 ................................. GTCCGACGCGCGAACAATACCGAAGTGCGCCTCG 5434824 33 100.0 34 ................................. GGTTCGCCGACGCTTACATTGAAACCGAAGGACA 5434757 33 100.0 36 ................................. GCGTCCTCAAACGACGCAAACGAAAAGTATATCGCA 5434688 33 100.0 34 ................................. TGGTTTGCCGACACCTTCGTTGAGCGTGAAGGGC 5434621 33 100.0 36 ................................. CCACGCGTGGAGTTGGAGTTGATAGCGCGTCATCAC 5434552 33 100.0 35 ................................. GATGTCGAACGCGAGCGTCTCGCATTCGACCAGCG 5434484 33 100.0 35 ................................. CCGTCTGATGACGGCGCGTAGCGCGGCAACACTTG 5434416 33 100.0 36 ................................. TGTAGTAAATTGTGAGTGAAGCGTACCAGCGATAAA 5434347 33 100.0 35 ................................. GGCCTGTGGGGCTATTACAGCGAAGCCGCTACAAA 5434279 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 111 33 100.0 34 GTCGCCTTCCCCCCGGAAGGCGTGGATTGAAAC # Left flank : TGCAATAGCGACGAGGCTTATACGAAACCAGACTCACAGGAGGACATATGATGGTACTGATCACCTACGATGTCAACACGGAAACGGAAGCTGGCAAACGGCGACTGCTCAAAGTTGCAAAAGCCTGTCAGGACTACGGACAACGGGTTCAGAAGTCGGTATTTGAATGCATTATAGATGCCGCGCAACTCCGCCAGTTGCAAGCCAGGCTGGAGCGCATTATCGATGTGGAGACCGACAGCATACGCTACTACTACCTTGGCGACGAATGGCGACACCGGGTCAGGCACGTAGGCGTCGCCCCTGACGTTGACATAGAAGGGACGCTTATTCTTTAGTCTGCGAACCAGAAGCGAACATGGAATCGCCGGGAGGTTCGCAAACTCAGCAGCACCTTAAAAACCTTATATATGGACAAATTGCACCGAGAGCAACCCTGAAGATCCGGGTCATGCTACAATATCTGGCGGAAGCAGGGCATAGCAACCCTAGATATTGCG # Right flank : CCCTCGCGCCACGCCAAAGAAACCACGGATTGGCATGGATCGAATGGATGGGCGCGAATGCAGGTAGAAAAACCCGTGGCAACCCGTGCCGATCCGCAGTTGAATTAAAAGCCTGTCCGTGGTTGATTTTTCCGGAGCGCCTGTCCCGATCCAGGGGCGATTGCGCTGGATCGGTTTCCCTTCACGCCTGTCAGGCGCCTGGAATGGCGATCACCGTATCACCAATGGCAACGCCACACCGAATGGTCGCCCAACATTTCCGATGAGCGGAATATCATCAGTAATGCCGAACGCCACAACAAACTCGGCATCCCCGCCGTCACGGGCAGTGTCGCAGAAGAAGCGCAGCACCGACGGACGATAGACGCACGGGTCATCGCGCCCGTCGCCGTTAACATCACCGAGCAGGGGAATATCCCCGGCGACGCCGAACGCCACAACAAACTCGGCATCCCCGCCGTCACGGGCAGTGTCGCAGAAGAAGCGCAGCACCGACGGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCCCCCGGAAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //