Array 1 2269827-2269004 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP045567.1 Lacticaseibacillus paracasei strain TK-P4A chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2269826	    36	 100.0	    30	....................................	ACGAACAGACGAACAAACAAATCATATGGA	
   2269760	    36	 100.0	    30	....................................	CGGCCACGTGTTTCGGGCAACCGACAATGG	
   2269694	    36	 100.0	    30	....................................	ATCAAGCGGCCAAAAGTAATCTGTATCCCA	
   2269628	    36	 100.0	    30	....................................	ACGAACAGACGAACAAACAAATCATATGGA	
   2269562	    36	 100.0	    30	....................................	CGGCCACGTGTTTCGGGCAACCGACAATGG	
   2269496	    36	 100.0	    30	....................................	ATCAAGCGGCCAAAAGTAATCTGTATCCCA	
   2269430	    36	 100.0	    30	....................................	ACGCACGCCGTGGATCAGAATGGGTACACA	
   2269364	    36	 100.0	    30	....................................	ACTATTCAACGCGTTCACAACGCTTGCAAG	
   2269298	    36	 100.0	    30	....................................	CACCTGCCTGTTTTTGGACTGCAGCAACAT	
   2269232	    36	 100.0	    25	....................................	CTAACAGCAATACAACAAAGAAACG     	
   2269171	    36	 100.0	    30	....................................	TTTAAACCATGATGCAAAATACTTGCCAAG	
   2269105	    36	  97.2	    30	................A...................	TTTGAAAGTGACCGAAACCCAGTCTACAAA	
   2269039	    35	  88.9	     0	.............T....C.............-..A	|                             	C [2269014]
==========	======	======	======	====================================	==============================	==================
        13	    36	  98.9	    30	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTAGATCTAGATAAACTTTTTCAGCGTCTAATCTATAAGAAGATGGGGCTGTCGATTGAGGATCGGCGGCTTGTCGAACTGATTGATGAATCGCAACAACTGGCGATGAATTTACTCCAAGATCCATTCTTGAGTGACTTACCAATCACGGTTGAACCAGGAGGTAAGCTCGAACAAATCATGAAATACTGCAATGTTCATTTTGACGAGGCAGTCACGTCAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTCGAGGAAAAGAAACTTGTCATTCTCACGAATGTCAGTCATTATTTAAGTGCCAAAGATTTCTTGTCAATGACTGAACAGATCGTTGATACAGAACTTCAGCTTGTTCTAATCGAATTCTCAAAGGTGAACAGGAAGGAGTACTTTGAACAATGCCAGTATATCTATATTGACGAGGATTTTGTTGATAGCCGCGAACTTGATTGATTAGGAGATAGTGTGAAAACACCC
# Right flank :  CGGGTTGAATTAAGCGGATTTTAACATTGTTACCGTGTTAAAAAATAATCAATTCCGCAACTTTAAAGCATGCGGTCTGATCAGCATCGGCAACTTTGATGACTTTAGCAACTCAATTAATTGTGGTTACGGTTTTCTTGGCCAGTCAACATTTTTTTAGGCTATCAACCACGCTTCAACATCAGGTATTCTTGTCAATCTATCCTTTGTTCCGACTATGACGGGTTCATCACTTTTACAGCATATGTTCGTCAACATCGTTAGTTGTCTGGACGCACACCAGCCCCTTTATAGGATCTATCTGCGTTCGCGTAACGTTCTGGCGGTGACGTTGATGATGCAGGTCATGATGGGACTGGGTGTTGTGTTTGCATGACAATCAAAAAACCGTTGCCAACTAAACTGGAAACGGTTTTTCGTCCTCACATGAAGAAGTGTGCCAAAGTTCCACTTTCAAAAAGAATTTAGTTCCCAAGACCAATCTACACAAAGCTTGTGAT

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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