Array 1 14664-14244 **** Predicted by CRISPRDetect 2.4 *** >NC_019777.1 Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 14663 37 100.0 37 ..................................... CTTTGGTGGGAGTTAATCAAGATGACGTCATCTTCAC 14589 37 100.0 38 ..................................... GGCATTTACTTTATTCACACGCCGCTTTGATGATATGG 14514 37 100.0 39 ..................................... TCTTGCCTAAACTATTCCCAGCTGTAATCATTAATGGCA 14438 37 100.0 37 ..................................... TTGGTACAAGGAACTGTATCAGACTCAAACTGAAGGA 14364 37 97.3 47 ....................................G TTAAGCATTTATAGACATACGAGGGATCAAGATAAGTTCTTTTACCT 14280 36 73.0 0 ..C....TC...CG...........A..-.A....AA | T [14246] ========== ====== ====== ====== ===================================== =============================================== ================== 6 37 95.0 40 ATTGCTACTCTTATGGGTAGTGGAATTAATGGAAACC # Left flank : TATAATCCCCTGCTTTCAGGTTAACAATATCATCGTTAATTCTTAGCTGTGCCTCTCCTTTAACCAAGATTACCTATTTGTCTTGTTCCTGATTATAAACCTTATTATCGGATTTGTCGCTACTAACAATTCTCTCAATGACAACGTTACGGCAGTTGAGTAGTTCAGAGAAATCCTCCCCCTCAACTAAAGAAGGAATATTGTCGAATAAATTTTCAGGGTTAATCATTGGATGTTTAGTATTTTTTATCAATAATAGTCTCAGGGAATTTAATCAGCATCGCAACCAATAAATTAAGGAAAATTAAAGATTAGGTGACGACGACCCTCAACCAAAATGACCTCAAATTAAGTAAATGCGTTGTGAGCCTCGATAGCATACTAGGCAGGACTTTTAACTATGTACATCAAGGTATATAGAAAGCAATCTGAAGACAATTTAGCTAAGGTTCGCAAACCGTTTCTAGACATCAGACAGGGTAAGTGGTTAAAATTAGTTA # Right flank : GGTGATCGCACCATTATGAGGAAATAGGGATTGCTTTAGTTAGTAAGATGCAAAGATTGTAGAGAAAGAGCAGTAACAAAAAATCCTCGGCAATAACTGACGAGACAATTTATTGCCTACCAAACATCAATAATTTATACGACGAGAAGTAATAGAGCCAAATTAATTATATTTTTAAGTGATTACAGGAATCATAAGGGTAAACCAATTTTTGCATTCCCCTTAACTGTATTTTGACCTGTTTTCTACTGCTTAATTGCTTCAAACAAAGATTAATCATACTAACAGGACGATTGATACTATAACTGAGTTGTTTGATAGTTAATCCTAATCCTTGAGGATGTTGGTTAATTACACCCAATAACTGCTCACTCGTAGTCAAGCCACCACGAGCTTCTATAAATATTAAATTCATTTCCTCACACACAAATTTTGAATAATTATTAAGTAATTATAGTGTAAGGGTTTGATAACGAGAAAATATACTTTATTATTATTTG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCTACTCTTATGGGTAGTGGAATTAATGGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 32652-35929 **** Predicted by CRISPRDetect 2.4 *** >NC_019777.1 Cyanobacterium aponinum PCC 10605 plasmid pCYAN10605.01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 32652 36 100.0 34 .................................... TAAGTTTTGTTTTACTAATCCCCCAATGAATTAG 32722 36 100.0 37 .................................... GATATATATCTATATCTCCCTGCGATTATTAAACAGT 32795 36 100.0 39 .................................... TAGTTTTTCAGCCTCAACACGGGCGGTTTCCTGAGTTAG 32870 36 100.0 41 .................................... CGTAAAGAGGGTTTGTTCTCTTTAGTGCTAAACGGTAAACA 32947 36 100.0 38 .................................... AAGCACATAATGTAACTTTGGTGGGAGTTTATCAAGAT 33021 36 100.0 39 .................................... TGACCTGACCGCGTAGACCCTCGATAGCAAAAAACTTCT 33096 36 100.0 39 .................................... ATAGCCCCTGTTATAGCTTCATAAAAAGGAAAGAAACTC 33171 36 100.0 42 .................................... CAAACACGCTAGTTAAGATATCACTAGCTAAATGCTGTACAG 33249 36 100.0 45 .................................... CTGCATCGGAATATCATTACCTTGGCGAACAGCATTGATAGTATC 33330 36 100.0 39 .................................... TGATATGCGATCACTATACACGTTCATCTCAATCACTGC 33405 36 100.0 35 .................................... TAGAAGGCAATCGTGACATCTTCAGCTTATCCCAT 33476 36 100.0 48 .................................... TTAAAAGCCCAATTAGCAAATTCAGTATCTCGCGAAGAGTTTAATGAG 33560 36 100.0 42 .................................... AAGAAGGCTTGGTGTTGCTGAACTAGCTCTGCTATAGCCGGG 33638 36 100.0 36 .................................... TTCATACCAACTTGTATCTTGGCAAGAAAAGTTTAT 33710 36 100.0 36 .................................... CTAAGTTTTTATTACTACCTATGATAAAGGCATTCG 33782 36 100.0 39 .................................... GCAATTAGATGCAAACCCTGAATTGGTTGACAAATTAAA 33857 36 100.0 40 .................................... CATATCCGCGTCCTCATCGAAAGTCATCCCTTGGGTGAGA 33933 36 100.0 37 .................................... CTCCAAGTTAATCAACAATATTGATTTGACGTTTAAA 34006 36 100.0 37 .................................... AACTTGCCCATTCAGAAGGTACGGGCTTAAATTTACT 34079 36 100.0 38 .................................... TCAACATTGCGCTCTGTTGTCTTTAAGGTGGAGGCAGG 34153 36 100.0 43 .................................... AAATATCGTAACAGAGTTCTGGAGAATAGATAGGTAGCAACTG 34232 36 100.0 40 .................................... TGAATTTAAGAATATAGTGGGATATCCGCCAGAAGCAGCC 34308 36 100.0 42 .................................... AATCTCTTCTTCAGTTTTCTGCTCTGCCTCGGCTACTTTATC 34386 36 100.0 37 .................................... GAGGTATATCCCCACCTTTAATAACATCAGCATTAAT 34459 36 100.0 39 .................................... CTTCATACCCTTTTCTTCTTGAGTTAAATCAGCCCAGTT 34534 36 100.0 37 .................................... AATCCAACAGTCTCTGGGCAATTAGCATGTAACCAAT 34607 36 100.0 40 .................................... TTAGATCTAGGTGATACAATTCATCTGGACGCATAGATTT 34683 36 100.0 40 .................................... TTTAGAAGTAATAGTAGAATTAACAATAGCAGATTTACCG 34759 36 100.0 38 .................................... CCATAGCTCCTCTTTCGAGGAGGCTGAATTATTAACCA 34833 36 100.0 38 .................................... GCAGTCATATAAAGCTGTACAGTCTCGTGGGAACTAGA 34907 36 100.0 40 .................................... CTTAGACGAGTTGAGGATAGCTTGCCAAGAAAAAGAAAAA 34983 36 100.0 38 .................................... TAAAGATAATGCGGTTTCATAATCTCCAGCAACACTAC 35057 36 100.0 39 .................................... AGGTCGTCCTCCTGAGTTGCCATCTCCTCGAGAATAAGA 35132 36 100.0 40 .................................... ACATGGCTAACGTTGCCGTCACTGGAGAGAACGGTCTATT 35208 36 100.0 42 .................................... GCACATGGCAGCGTCATCTGCTAAGTCGGAATATTTTTCAGG 35286 36 100.0 46 .................................... AGGTTGAAAAAGAAGTTAAGGGATTTACTGTGTTCGTGCCATTAAC 35368 36 100.0 37 .................................... AAATAAATCTTTTCAGTTCGAGTATATTCGTCCTCGG 35441 36 100.0 36 .................................... TTTATTTCATCGTAGCTAACAGTTACTACATAATCA 35513 36 100.0 44 .................................... GTACCCAGAAACAAATCCAAGCATGAGCACCTGTACTACCTGCC 35593 36 100.0 38 .................................... TCAATATTGGTATCGTTGTTTTGTTTAACAATGAAAGG 35667 36 100.0 38 .................................... TTTATTGAGAGATGATCATCAGTTTATTATTATTTAAG 35741 36 100.0 40 .................................... CGTTCATATCTATGAACTAAATAAAGTACATAAAAAAGAA 35817 36 100.0 41 .................................... AAGGCTTCGATGGTTTTAGACGAAGCTTTTTCGTTAACGCA 35894 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 44 36 100.0 39 CTCTCCCTTAATGGGAGAAACTAATTGAATGGAAAC # Left flank : AGAAATATAGACAATATAATCAAACTCTACAAATAGACAAGATGAGTCGAATTGTGATGTTAAGAATTATTCAGTATCCTTCTTTTTCTTGCCCTAAATCTTTAATCGATAATTTACTTCATTTAGAATCTTATTGTGACAAACGCAATGAATTAGTACATCAGTTTGAGGGAGTCTCTGAGTCCGATATTACGGAAACTGAGTTGAATGATATGGTTAATAAAATTCAGAGTATTCTAAGTGACTTGTTTCCTGATTCTTTTATTAAGGAAAGCTGTTTTGCTGTATTAAATAAAAAGATTATGGCAAAACTAATCAATAGCGACGGATAGCAGAAATGAACTTAAATACTTATTCTCTCGTTTTATCCCTCGATGTATTGTTAGATAAGGATTTCAGAGATTTTTCTTTGACAAAAATAGGTTAAATTGATTATAATTTTGCTATCGGTCGCAAACCGCCTCTGGAATTATTATCAGATAAGCGTTTTAAAACTGGCG # Right flank : CTTGGGATTATAACGATAACACGCTATGTAATTATCTCTCCCTTAATGGGGGAAACTACGATGTTTTGTCTAGTTTTTGGTAGCGTTGGGAGAGTGCGATCGCACCTTCTTTATGTCTATCCCGTAAATCTTCAGGGTAAATAACTTCGACACAACTACCATAACTCTGTAACCAAAATAAAAATTCATTAAGAGAACGGGGAGGAAGACTTATAAAATAATCGAGAAATAAAATTTGATTATTATAGTTATCTTTAGTAACTTTTATTCTTTGTTTAGAGTGTCTTAAATCTCCTTCCAAAATAAAATTAGAAATAGGAGGATAAAACCTGACTTTAATTTTTTCCAGTGTCAGTTTTCCTTTTAATTCTAATTGTTGTTCCTCTAAATTACCTAAGTTTAATCCCCAACCATTAGTTAATAACTGTTCAACATTTTTCAGACATTCTTTTTGAGCTTGAATATTTCTACCCGCCGGGGATAATAATTGAAAATAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCCCTTAATGGGAGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 811-54 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 810 37 100.0 36 ..................................... TGCAGATTTAATACTGATATTGATTGGCTTTTTGAT 737 37 100.0 35 ..................................... GAATTTTTATGCCTTCTTCTGCTCCTTTTATGTAA 665 37 100.0 35 ..................................... GGCTTTTTTTTCTCCAGCAGGGTCATTATCAATTA 593 37 100.0 36 ..................................... TTCACTGCCTTTTTTCAAGGCTTCATCTTTTGCAGT 520 37 100.0 33 ..................................... GAACTTCGCAAAATTTTCCAATCTCTTATTACT 450 37 100.0 35 ..................................... AAGATATTATTTCTATTCTTACTTTAGTAGTTCCT 378 37 100.0 34 ..................................... TACCTTTTTACTTAGTTGTATAACTGTATTGTAC 307 37 100.0 35 ..................................... ATTCCCAATCCCAATACTAATCCCAATAATCCAAA 235 37 100.0 37 ..................................... TTGAATGTGAGCTTCCAATTCACCGATCACATCGTCA 161 37 100.0 34 ..................................... ACGAATGGTTTGACGAGAAAATATCGGCTAGAAC 90 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 35 GTTTAAACTCTTATTAATACCTCTTAGGGATTGAAAC # Left flank : CAGAAATGCTAAACTGTAGATTAGATTCTATTTTACCCTTGGCTGTATAGGTAGCTGTAGGGGTTTTATAGGTAATGTCACAGGTATAACCCGGAAAATTCTCATCCCATGTATAGCGATTTTCGTAAGCATTGCGAAAAAGTTGTTCTGCTGTTAAAGTTTGAGTCATATCTCGATTGTCCTATCTTTTTATTTTCTGATTATAACTCTTTTATTTGAGGGAGTATAAAAATATAACTATATAGAAACATAGGCAATCAGCAATATAAGATATGCGTAAGGGATAGGGTGTAAAATTAGACTTGAGAAGATTTACCTCACAACTCTATATATAGTCTAGTTTCTACCAATTTCAAATTTTTATAGCCTTACGCTTTTTTGTTCACAAGGGTTTTCGTTATTTTTTTTTGACGTTGGTATTAATTTCATTTATAATTATGAATAGGCTTACGCAATTGTACCTTGAAAACTTTATATATCAAAGGCTTCGATCGTGGGCG # Right flank : CTCGCTTGTACTTAAGTACTCCCATTTTGGTGTTTTGTTTAAACTCTTATTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTCTTATTAATACCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 1065556-1064438 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 1065555 37 100.0 39 ..................................... ACGGAAGTGGCTTCTGCTAAAGATATATAGTATTTAAAC 1065479 37 100.0 38 ..................................... TGTCAAGATCCAAGCCTTGTAAGGTGTTTTGTAGTAGT 1065404 37 100.0 40 ..................................... TCCATGGTTATCAATCTCGTACAGCTGTTGTGCATAACTT 1065327 37 100.0 42 ..................................... CAATGGTTTTTACACCCCCCTAATCGTCTCCTTGCGACTGTA 1065248 37 100.0 45 ..................................... GGCACATTATGACCTTTGGCACGAAGCTCTAAGGAGTTGTTACGA 1065166 37 100.0 37 ..................................... CTTGTAAATAATATACCATGCCCTTTTTCGTATGTAA 1065092 37 100.0 38 ..................................... TTCGCTTACTATTCCCTGTTGTATTCCCTGTTGTATTC 1065017 37 100.0 40 ..................................... GCCGCTTTTGCAGTACGACGAGCTTGTTTTTCTTCTTCTC 1064940 37 100.0 42 ..................................... TTAACAAAATTGACAGTTTTTCCGTACTGCAAATATTGAAAA 1064861 37 100.0 40 ..................................... CCAATTTCGCTATCAACTTGGTAGCCAACCCCATCTAAGT 1064784 37 100.0 36 ..................................... GGCTTTCGCCCCACTACAATTTAGCGTACTGAACGA 1064711 37 100.0 37 ..................................... ATACTCTTACGCCCCTTCCCCACGCACCACCACATTA 1064637 37 100.0 35 ..................................... ATAATAAGCTACAACTGCAAGAATCACTAACAATA 1064565 37 100.0 54 ..................................... GTAGCACCATGAACCCAAATTTGGGCGCATAGTCCCAGAGGATCGGACTGCCAT 1064474 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================================== ================== 15 37 100.0 40 GTTGATTTCCACATTTACCCCGTAAGGGGACGGAAAC # Left flank : AGTGTAACCTTCTATCATCGGTGTTAAATAATAATTTATTACATCTTCAATTATTATTCAAAGATAACACAAAACATAATCCTTTTGTATAAAACTTATTTATTTTCTCTATCAGGTAATAGACTGCGATCGCACTTAATGTAATAAATGATTTTCTGTAATGTTGTGACTAAATGGTTTGTTCCTGTCCAATAATAATTGACTATATCTTGAAAGAATGAAATTAGTAGTTTATTAGTTGTAAAGAAAAATAACAGGGGGTTGTAAAAATGTCGCAGTTAGTAAATAATAAAGAAAGTTAGATTTTAAGGTTAATAAGTAAATAACTTAGCATTATTGCTTGGGTTCACTCTATAATTGTGCTTATTACCCAATAAACGTCTAAAACAGGTTTTTTTACCTTGATAATTTAATATCATTAAGAAATGTAAAGGACTACCTTGTAGTTTTTCGCATACAGTTTGTAAAAACCATGTCTGACAAGGTTTCCAAAAGATAGG # Right flank : GACTCATGTAAAAAAACCCTAAAATAGACACAGAGTTAGAAATGATAAGATGAGTAGATATAGCAAAGATTGGAGAGAAATAACTACAGCAATAAAGGAAAAAGCCCATTAGAAGCGTAGTCAATGCGGTGCAGACTTCAAAAATAAATCAAGTAGTGGTAGCTCTCTGCAAGTGCATCACTGGAACAGAATACCAGAAGATAAAAGACCAGAAAATTTAGTAGCTCTTTGTAATACTTGTTATTTAAAATATCATCATGGCGGTAAAAGTAATATTCTTAATCGGTCAATTATCTCTTAATCTCTAAATGAAACACTTAAATATCATTATCTCTGTTATCTTTATCTTTGTTTTTACCTTGATAATGTTCGCATCTTCCCTTGTTTACGAACCAGTACAGACAACAGATAATCAATACTATGAATATCGAGCATTACATAACAGGGATGGCATTGGCAAATATTATCTTGGTAGAGAAATAGCGAAGGTGATGGGGCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATTTCCACATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1142197-1141144 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1142196 37 100.0 37 ..................................... TCCCAATTACTTCGTCCAAACAAGAACCAATCTCTGA 1142122 37 100.0 44 ..................................... GTGGTGTTCCTAACCTCATATTAATACACTAACAAAGTGTTAAC 1142041 37 100.0 38 ..................................... TTAGAAGCGGAATCATCACTAGAAACAGTAATGTGGAT 1141966 37 100.0 45 ..................................... CTTCTTCGTCTTGTTTCGGGGGGGCGTAAAAGCCATCTCGTCCAC 1141884 37 100.0 41 ..................................... CCCTTTAGAATGCCGAATGGATTGGATGTCTATTCGGCAAG 1141806 37 100.0 45 ..................................... GACGGGGAAAGCAGGGATTTTGAAGGGCAATATGGTGGCGTAAAC 1141724 37 100.0 42 ..................................... TCGTATACATCCTTCAGGCTGATTTTTACGCCTTCAGCTAGG 1141645 37 100.0 43 ..................................... TTCTTTAAATAGAAAGAACGCTTTAGTAGTAGTTTGATCAATT 1141565 37 100.0 45 ..................................... AAAGTAGCAGAGGTAGAGTTAGACATAATTTTAAGATCCTTTTCT 1141483 37 100.0 41 ..................................... GAACCTTTCTGGTGTGTGGGAACGGGAGGCTTTTCCCGAAA 1141405 37 100.0 32 ..................................... TGGAATAAGAATAAAGAGGGCTATTCTTACAA Deletion [1141337] 1141336 37 100.0 38 ..................................... TTGCCTCCTCGGCGATCAAATCCGCTTCAGTCTTTGGA 1141261 37 97.3 44 .........................A........... TCCAAAATTCCCGACAAAAAAGAATTTGCGATCGCATCTTTAGG 1141180 36 75.7 0 ...A......T....G..T.A...G.....TA-.... | G [1141146] ========== ====== ====== ====== ===================================== ============================================= ================== 14 37 98.1 41 GTTGATTTCCACATTTACCCCGTAAGGGGACGGAAAC # Left flank : TATTTATTAACTCACCTACATGAAGATAATATCGGTAAATATTATATCTATGGCGATAACATTCATCATTGGAGTGAAATTAGTCTTAAATTAATTTGCCAATTAACCACCGCAGAAAAAACTTTTGCTTTAACTTAGTTATTTTCAACATCTACAAAATAACCAAGAAGGAGAAAAACTTTTATCCGAATATCTTTATTAAGTTAAACTTCAATGGGAATATTCTGATTACCTAGCTTTGTAAAGAAATATTAACTTAACTTGTCAATCTGTCGCAGTTAGGAAATAATGGTTAGAAAGAGTTTTGGCAATAAAAAATTAGATAAGTTCCGTTTTTTGTTAGGATTCACTCTTATACTTACGGTATTATTCATTTTTACTCAAAAAAGCCCTTTTTTACCTTGATAAAGAAATAGTGTTAAGAAGTGTAAAGCATAATTTTGTATTTTTTCGCATACACTTTGTATAAGCAAGATGCAGTAAAGATTTCCAAAGGTAGG # Right flank : TGATTTTGAGAAAAAGTTAAGAGAGAATTAACAAATAAAACTACAATGATGGTGATAGATATTTAAGTTGACGCAATTTAGTTGTAATCAGTGACACAAACTCAAAAGTATATTCACAAAACGATATTAAGTAATGGTATTACCCTAGTGGTAACGGAAAACCCCACCACGGATATTATTGCAGGAAAAATTTTTTGTCGTCAGGCGGGTAGTTTATGGGAAGCAAAACATCAGGCTGGATTGTTTCATCTTTTAGCTAGTGTCATGGCTAAGGGCACTCGGAATTTATCTTCTTTGGAAATTGCAGAGAAGGTAGAGTCTATTGGGGCGGCACTAGGCACGGATACTTCTAGTGATTATTTTTTAGTCAGTATGAAGACTATTACAGAGGATTTTCCTGAAATTATGGCTTTAGCCTCCGAAATTCTCCGTTTTCCCTCTTTTCCTCTGGATGAGATTGCACTAGAAAAGAATATTACAATACAAAATATTGTGTCTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATTTCCACATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 1150978-1149597 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 1150977 37 100.0 40 ..................................... TTTGTTTACTTGTCCTAGTTCTTCTTGTAATTCTTTTACT 1150900 37 100.0 50 ..................................... GTGTTACCCCAAATGCTAGGGTAACGTGGAGGTGATTAGCCTGCACGAAA 1150813 37 100.0 43 ..................................... ATTTAGCCAAGGTTCACGAAAGAACAGACCTAGCAGATAAATC 1150733 37 100.0 44 ..................................... CAAGAAAGTTAAACTGTCTCTAACATATACATTAATTTGATCTC 1150652 37 100.0 40 ..................................... TCATAATAATGGGATTATTCCGAAATGTGCTTTATTTACC 1150575 37 100.0 38 ..................................... ATGAGCACCTGTACTACCTGCCCCTGAGCAGCCTTGGG 1150500 37 100.0 38 ..................................... TTAGTCATAGGGATTTTAGTACCCTCCTCTTTTATTTC 1150425 37 100.0 43 ..................................... TAGCGTCAGTGTAACCGCTATACCCTGAGGGCAAAGGCCAGCT 1150345 37 100.0 45 ..................................... CTCCATTACACCAATGTCGGACGTATCGGAGTTATAGTATTCGTC 1150263 37 100.0 39 ..................................... TTTCATCCCTTTTAACTGATTTCTAAACGCTTCTATTTG 1150187 37 100.0 41 ..................................... GATGGACGGCGAGTAAAAAAAGGAGACGTTGTTAGTTCAGC 1150109 37 100.0 37 ..................................... TAGGGTATATAATCTCATCTCCTTGCACCCAACCATC 1150035 37 100.0 51 ..................................... TGCCATTGATTTATATACTCATCCAGTGCGGCAATACTACTCTCATCTAAG 1149947 37 100.0 39 ..................................... ACAATTGCTATGAAGAACTATTGTTAAATCTATTCTATC 1149871 37 100.0 43 ..................................... AACTACCACTCTTTCACCTAAACGAGCTAATTGCTCATCACTA 1149791 37 100.0 45 ..................................... TTTTCTTCTTCTCGTCTTTCAGCCAATAGTTCTTTAGCTTCCGTT 1149709 37 100.0 39 ..................................... GTACTCTCCTCTTGGAAGACTTTTAGTACGTCCTGGGGG 1149633 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================== ================== 18 37 100.0 42 GTTAATTTCCTCATTTACCCCGTAAGGGGACGGAAAC # Left flank : ACGTACTCAATTGGCAAAATTATTAGAACAACATTGTGAGAGAGTGCAGTATTCAGTTTTTGAATGTCCTTTAGATGTAAAAAAATTAGAGCATCTTCTCTCTACTCGATGGTTAAAAGTTCTAAATTTACAGGAAGATAGCCTTAGAATTTATCCCCTAGATGCTTCCGCAAAACAAAAAATCAAAATTTATGGACTGAAGGATAATCCTCCCTACGAGTCTCCTGACTATCTCATCTTGTAAATAAGTGTTAAGCTGACTTGTCAATCTGTCGCAGTTAGTAAATAATAGTTAAAAAGAGTTTTAGCAAAAGAAATTTAGATAAGTTCATTTTTTTGTTAGGATTCATTTTTATACCCAGAGTATTTTCAGTTTTTGCTTGAAAAAACCTTTTTCTACCTTGACAAAAAAATAGTGTTAAGAAATGTTAAGCGTTATTCTGTAGTTTCTCGCATACATTTTGTACAAGCAAGATGTAGTAAAGGTTTCCAAAGGTAGG # Right flank : GCTTTTGATAAGTTCTACCGATGTTGAAGATGTTAAATAAGATATAACTGAAATTTCAGATTAGTGTATTAATACTAAAAAAGAAAATTTTAAAATCGATTTTAATAAAGTTTTCATCAATTCTTATTACTGTTTTCTGTTCTCCACCTTCAACAGTCCATTTTTGGCTAGATGAAAATCTGACCAAGTATAAAGAAGAGTCACTCATAAGCCGGATTCTGTTCCTTTAAATAAATTAAAGGGGTAGTTATCTATCTGGGATGAATATTACTAATCACCTCAAGCGGTACACCAAAAGCGGAATCGGGAAAAGACCAACCATAATTCCTTCGACCTTGCTCCCAACCGGGGTTTACCGAGCCAGTACCTCTCGATACTGCTGGTGGGCTCTTACCCTCACCTTTGCACCCTTACCTCTAATCGGAGGCGGTATTTTTCTGTGGCACTATCCTCACGCTCGCGCGCACTGGGCGTTACCCAGCAGGTTTGGTCTTTCGGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATTTCCTCATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 3180046-3182769 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3180046 37 100.0 35 ..................................... TGGTTCTTCAAGTTCTGGCGGTTCTTTGATTTCTG 3180118 37 100.0 38 ..................................... AACAGCAGAACTGCGATAACCAGAAGAAATTATTACAG 3180193 37 100.0 34 ..................................... TTCCATAAATTACTAACTACTTTTGTTACAACTA 3180264 37 100.0 37 ..................................... TCAGATAACATTTCACTAAAGCCTTTAGCACTGGTGA 3180338 37 100.0 38 ..................................... GGCTTCAGCCCACGTCAAGGCTCTTTCCCATGTGCCGA 3180413 37 100.0 35 ..................................... TAGAACACCCCATGAGCAAAACCCAATGGAAAAAT 3180485 37 100.0 37 ..................................... CTACCTCTCTCCATTTATAACCAATGCGAATTTCCGT 3180559 37 100.0 33 ..................................... GCAGTCGTAGGAAACTGCTTCTAACCAACGATT 3180629 37 100.0 35 ..................................... GCTACTACTGTGCTTTTTTGAGCAACCTCATCGTA 3180701 37 100.0 36 ..................................... TTTGTTTTCATCATAATAAATAGCTTCATAATTGGT 3180774 37 100.0 34 ..................................... CAAACAGTGCCTATAGGTTATGCACAACTTGTTA 3180845 37 100.0 34 ..................................... TTCCTCCCAATTATTTAATGCGATTCTTCTGGTT 3180916 37 100.0 33 ..................................... AAGTACTCTTGAGACTTCTCTACCAATTCTTTT 3180986 37 100.0 35 ..................................... ATTATCTAAATCTAATAAAGAGTTTGACGATTTTA 3181058 37 100.0 37 ..................................... CACCTCCAGAAGGCATAGAGCTTAATTTTCTTCCTTT 3181132 37 100.0 34 ..................................... AACCTTCGCCTTCTTTCTCCCCCAATTAAGATGC 3181203 37 100.0 35 ..................................... CTATTCCTCCTTTTTATTTCGATTATCATCCTCAT 3181275 37 100.0 36 ..................................... ATTTAACAAAATCATTGGAGAATTAAATTATGAGCT 3181348 37 100.0 43 ..................................... AAAGTTTTGTTGCTTCAAATTTAATTATAATTTAATTATATGG 3181428 37 100.0 39 ..................................... CCAAATCCTTGATTCCCTAGCTGATTAGCTGTATTTAAA 3181504 37 100.0 36 ..................................... TCTAACTCAATCCCTCAAGGGCAGTCGTCTTGTCAA 3181577 37 100.0 33 ..................................... ACATTCTGGACAATAATGAATAGCCCAATCACA 3181647 37 100.0 36 ..................................... AATTATGCTACTTTTAAAGGTTAATTCTAACCATGA 3181720 37 100.0 36 ..................................... AATTTTAAACGAGTTCATTGTGCAAGGGTAAATACC 3181793 37 100.0 33 ..................................... GCCCCCCAAAGCAATAGTAGTTTTTTCAATTCT 3181863 37 100.0 35 ..................................... TTGACTCCAAAAGAAGACGCTCCTTACCCCATTGA 3181935 37 100.0 37 ..................................... CTGATTGTGACGGATTGTGACTAATGTGACGGATGGG 3182009 37 100.0 35 ..................................... ACCAGAATTTTTCTTTAACCAATTTTCCCCCGAAT 3182081 37 100.0 35 ..................................... GAAGATAAAATAAATTTGCGCCCAGTGATTGAGGT 3182153 37 100.0 36 ..................................... AGTACAATTACTTGATCCCCCACCGAGGGCATGGAG 3182226 37 100.0 32 ..................................... GCTTCATCGGGATTGACCAAACCACAATTATT 3182295 37 100.0 35 ..................................... AGACCCTAGACGCTTATTTAAAACTCAATTTAACA 3182367 37 100.0 33 ..................................... TTTCTTGTCGCATCAGGACATAAAATGTTTCGT 3182437 37 100.0 36 ..................................... TTTTTATTAGTTTTGAATCTCTGTGCTAATTTACCA 3182510 37 100.0 38 ..................................... ATTAATTGGATAGACCATTTCAACCTCCGTATTTGTGT 3182585 37 100.0 36 ..................................... GTTCCATATCCTCAACTTGACGAGTAATAGCAGTCC 3182658 37 100.0 36 ..................................... GAGGGCATAATCAGGACAATTATCAGGACATACTAT 3182731 37 83.8 0 ..........................TA.T.A...GT | C,T [3182756,3182758] ========== ====== ====== ====== ===================================== =========================================== ================== 38 37 99.6 36 GTTTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Left flank : GTATATAATTATTAGCTACGATATAAAAGACGATAAAAAAAGAACTAAAATTCACAAAATATTAAAATCCTATGGTGAATGGGTGCAATATAGTATTTTTGAGTGTGAACTAACCGAAACTCAGTACGCAAAATTACGTCATCGTCTCTCAAAATTAATAAAAGACGATTCTGATAGTATCCGTTTCTATTCTATGTGTAAATGTTGTCAAGGTAAAATAGAACGTATTGGGGGTGAAATGCCAAGGGATAATACTATTTTTGTTGTCTAAATAGCGTAAGGGGTAGGGTGTAAAAAACATAATCGGCTAAAAAATTCATAAAGTCTTTACCCCGTATAGTTTACGAATATTTTATTTTCTTATAGCCTTACGCTTCTTTATTTGCAAAGATTTCAGCGATAAAGGGTGGACATTAAAAATGAATTTATTTATAATTGAAGCTAGGCTTACGCGATCGCACCTTGAAAACCTTATATTTCAAAGACTTCGATTATGGGCG # Right flank : TTAAAGTTGCGTGCAATTTGTCAAGTATATAGTTACAATTATTAATTATAAGCTCAATTCTTTGCTAACTCTGTCTCTTAAGACTTTTCTCTGTTGACTTGGGTGAGATGGGTCTATTTTTGGGTTTCGATCGCACTTTTTCATAAATCATAAGAATAACAAATTCTGAGTATTTAGTCTAAGGTAGTCAAATCCGCTAAGTTATGGATAATAAAGGATTAGAGCGATTGTTAGTTTTTATAAACAAATCATTGACAAAAATCACTTTTGCTTAACTTCTTACCAATGATACCTATAAGGGATTGAAACCTTTTCCTTTTTTCCTTAATACCTGAGTAGCCTTATGTTTAAACTCTAATTAATACCTATAAGGGATTGAAACATCGCACACACCCTAATAACTATGAATAAACATGATAGTTTAAACTCTAATTAATACCTATAAGGGATTGAAACACCAAGCGAAAAAGATACTCGTCATACCCGTCACCATGTTTAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 6 3183038-3183517 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3183038 37 86.5 36 .C....CT.....A.G..................... CTTTTCCTTTTTTCCTTAATACCTGAGTAGCCTTAT T,CC [3183048,3183051] 3183114 37 100.0 37 ..................................... ATCGCACACACCCTAATAACTATGAATAAACATGATA 3183188 37 100.0 37 ..................................... ACCAAGCGAAAAAGATACTCGTCATACCCGTCACCAT 3183262 37 100.0 35 ..................................... TAGCTTTTAATGCATAATTGACACTGCGATCCGTC 3183334 37 100.0 38 ..................................... TACGGAGCGCAATCAAGAGGCAAAACAGCCGGGACAGT 3183409 37 100.0 35 ..................................... GAGAACACCACCGCCTCATCGGCTGATTGTCGAGC 3183481 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 97.7 36 GTTTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Left flank : GATTGAAACATTAATTGGATAGACCATTTCAACCTCCGTATTTGTGTGTTTAAACTCTAATTAATACCTATAAGGGATTGAAACGTTCCATATCCTCAACTTGACGAGTAATAGCAGTCCGTTTAAACTCTAATTAATACCTATAAGGGATTGAAACGAGGGCATAATCAGGACAATTATCAGGACATACTATGTTTAAACTCTAATTAATACCTATACATTAGTTAGAAGTTAAAGTTGCGTGCAATTTGTCAAGTATATAGTTACAATTATTAATTATAAGCTCAATTCTTTGCTAACTCTGTCTCTTAAGACTTTTCTCTGTTGACTTGGGTGAGATGGGTCTATTTTTGGGTTTCGATCGCACTTTTTCATAAATCATAAGAATAACAAATTCTGAGTATTTAGTCTAAGGTAGTCAAATCCGCTAAGTTATGGATAATAAAGGATTAGAGCGATTGTTAGTTTTTATAAACAAATCATTGACAAAAATCACTTTT # Right flank : CGCATTTTCCGTGAATGCGGCAGTCTTGAAAATTGCTAAGGAGTAATTTTGTACTTACAAGGAATTGAAACGACACTAACGATAAATTTTCTTTATTCAAATCCTTGGATGTTTACTTAACACTGAGTGGTCATTTCACTCATAATTATCATCAACATATTTTTTGATTAAGGCAACCCCTTGTTTTTGAAATATTTTCTGGCTAATGTATTCATTTGCACCATAAATTTTTAATTTTAAATAGTTTTGAAAACAAAAATTATCAGCCACTATCACAATGGGTAAAGTTTGATATTCCATCAAGCTACGAACTACTTTGCAAAGTTTTTCTGCTTCTTCATTTCCTGTCTCTAATTGAAAAATTATCAAATCAACTTTTGTCTTAAAAATATAGTTTAAACTCTCACTTAAGTTATTTGCATTTAAACAAATATAATTTTCCCCTTCTAAAATAATTTCTACTTCTTGTAGCCAATTTTTATTTTCACTCAGACAAATTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTCTAATTAATACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 7 4073710-4074460 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================= ================== 4073710 37 100.0 37 ..................................... TTTACTTAAGTTTGCGGAATCTCCTTATATTGGTGGG 4073784 37 100.0 35 ..................................... ACTAGTTCCTTAGCTTCCGTTTGTTTTGCATCGAC 4073856 37 100.0 41 ..................................... CTTTCGCTTGAAATCCCAAGAACTCTGCACACCCTGCAAAG 4073934 37 100.0 40 ..................................... TTTCACCTGTCCTTTGATGCCAGAAAATACATAGTAGCGC 4074011 37 100.0 57 ..................................... AAGTAGTAGCAAAATTGTAGAAAAATTTTCACTCAATGGGAGTGAAAATATCACTGT 4074105 37 100.0 39 ..................................... TTCGACACTAATAGTTCTGTTTAATTCAACAGGGGAAGA 4074181 37 100.0 47 ..................................... AAATCTAAGATAATGAGCAAAACCGTAATCAAAAGAGATGGCAGAAA 4074265 37 100.0 40 ..................................... CCAACTACCGCTCAGTAATATGAAACTTAATCATAACTTC 4074342 37 100.0 45 ..................................... TTCCCCAACGATTTTATCTACGGCTGCTTTAAGACGTGCAACGCG 4074424 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================= ================== 10 37 100.0 42 GTTCGATTCCACATTTACCCCGTAAGGGGACGGAAAC # Left flank : TAACCTAAGCAAAAGGGTAAAGGCTTTGTTTAGGAATAAATTGCGATCGCACTTAATGTAATAAATGATTTTCTGTAATGTTGTGACTAAATTGATTATCTTCGGCAAAAGCTACTAACCATTCTTTTAAATTGCTATATCGCAACTTATCTTTTACTTGTTGTCTTACCGCAATGGCTTGTTCCTGTCCAATAATAATTGACTATATCCTGAAAGAATAAAATTAGTAGTTTATTTGTTGTAAAGAAAAGTAACAAGGGGTTGTAAAAATGTCGCAGTTAGTAAATAATAGTTAGAGTTAGATTTTAAGGTTAATAAGTAAATAACTGAGTGTTAATGCTTAACTTCACTTTTTAATTGTGCTTATTGCCGAATAAACGTCTAAAACAAGTTTTTTTACCTTGATAATTTAATATCATTAAGAAATGTAAAGAACTACTTTGTAGTTTTTCGCAGACAGTTTGTAAAAGCTATGTCTGACAAGGTTTCTAACGGCTAGG # Right flank : CGGCTCAGAAAAAAAAGCCCTACAATAGATACAGAATTAGAGATGATAAGATGAGCAGATATAGCAAAGATTGGAATAAGATTGCGTGTGCCATCAAACAAAAAGCCGATTGGAAGTGTAGTCAATGTGGTGCTGACTTCAAAAATAAATCAAGTAGAGGTAGTTGTCTGCAAGTCCATCACTGGAACCGAATACCAGAAGATAACAGACCAGAGAATTTAGTAGCCTTATGCAATATATGTCATTTAAAATATCATCGTGGCGGTAAAAGTAATATTCTTATCGGTCAATTATCCCTCAATCTATGACTTATCCTACTTGGTATCAAGAAGCGATCGCGCGAGGTATTGATTTTATTGTAATTGTTTACGAGAAAGCAGAAGGCTTCGTATTTTGTCCGAGCAACCTAGAAACAACTTTCCGTGTTGGCGGGGACTATGATGGTTCTTTTTATACTAATGGAGAAGGAGCATTAAGACATTATTATAATTGTCTAAATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGATTCCACATTTACCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 8 4114043-4113500 **** Predicted by CRISPRDetect 2.4 *** >NC_019776.1 Cyanobacterium aponinum PCC 10605, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4114042 37 100.0 38 ..................................... TACGATGGCAAAATGTGGATTTAATGAATGAAAAAGTT 4113967 37 100.0 35 ..................................... AAGTCGCTTCCACTTTTCAAATCTAAAATCATCGG 4113895 37 100.0 38 ..................................... CGATTAATAAGCAATATATTGTTGATGGCGATGGTAAT 4113820 37 100.0 35 ..................................... TGGGATAAAAACAATAATACTTATCGCTTTAACCA 4113748 37 100.0 34 ..................................... TAAAGCCCTCAAATTCTTTAATTAAGTCTATCCC 4113677 37 100.0 32 ..................................... CGTAAGCAACCTTTTAAACCTTGCAACTTTTC 4113608 37 100.0 35 ..................................... TTTTAAGTGGATTAACTCACCTCCTTTTATCTTTT 4113536 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 100.0 35 GTTTAAACTCTTATTAATACCTCTTAGGGATTGAAAC # Left flank : ACCTCTTAGGGATTGAAACAGTCTCGTTAGTCTCACGGGGGGGGGGGTCAATTTTT # Right flank : ATGTTTGGTAAAAACCATCAGGGAAACTTATCAACAAATCTGGAAACCTATTATGATCGGATTAAGCAAATATTATTGGGGGTAATATGAATCAAACTATTGAGGTAAATATTGCTGATATTCTCGTCCGTTTGGAAGGGAAAATTGACAAGTTAGAAAACAAAATTGATCATTTAACTAATGAAGTTAATGAGGTCAAAATCAATGTTGCTAAACTTGATGAAAAGTTAAATAGTGTGGAGAGCAATTTTAAAACTAATTTTGAGGGTTTAGATAAGAGATTGGTTAATTTAGAGTTTGTTTATCGTGGGGCAGGGGTTGCCATTATTGGGGGTATTTTACTGGCAATTTTTAGATTTTTGTTTCCTGATTTTACTATTTAAGCAATATTAAAGGGGTGATAAAACCCCTTTTTTTGTTGCAATTACCATTGGTTAAAATTTATAATTTAATTTCCCACTTCTTGGCAATATTAGCAATTTCTCTTGCTTTATCAGTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTCTTATTAATACCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //