Array 1 15014-11874 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIW01000132.1 Chromobacterium subtsugae strain Cv017 Sca_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15013 29 100.0 32 ............................. ATGGCGGCGCAGCGAGCGCGTTCGCGCCGGCG 14952 29 100.0 32 ............................. TCACGACAAAATAGGAAAAAATAATATGCCTA 14891 29 100.0 32 ............................. GCTTACCTTAAATTCTATCGTTTTGGTCCTAT 14830 29 100.0 32 ............................. TGACTACCGAAAATGCGGCGTTTACCGCTGTC 14769 29 100.0 32 ............................. CCGGCAGTCTTTGCTAATTCGCAGCGGGAACG 14708 29 100.0 32 ............................. CTCAGCGAGGTCAACGCACAACTCGCGCTATT 14647 29 100.0 32 ............................. TGGGAAAACAACGTTACCCGCTTCTTCCGCTT 14586 29 100.0 32 ............................. CCCTAGCTAGCCAGAATGGCGCAGGCGCTTTC 14525 29 100.0 32 ............................. GAAATTCCGCGACAGGGCTTCAGATACAATAC 14464 29 100.0 32 ............................. GTTGAGCCGAACGTGCAATATTTTGCAGTTTT 14403 29 96.6 32 ............................T CGAACCGCACGGCTACCAGATGCTAATCATCC 14342 29 100.0 32 ............................. TCCTGGCGCATTTCCAGCGCGGCGAACAGTGG 14281 29 100.0 32 ............................. GAGATTGAGATGTTTGAAGTCACTCTGAAGCA 14220 29 100.0 32 ............................. GCGATTTGCTCTGGAGCGCGCCGAACTCAATG 14159 29 100.0 32 ............................. GGCGCTCCAGGGTGGGGCCGCCCCGTCGTAGA 14098 29 100.0 32 ............................. GCAGCCGACAAACTGTCCAAACTGGACAGTAG 14037 29 100.0 32 ............................. GTCCGCGATTACGCACGACTACAGGCGGCCTA 13976 29 100.0 32 ............................. GCGGAGCGTTGGGCGTCGAATTTTTTCGTTCT 13915 29 100.0 32 ............................. TCAGAGTCAGGAGGCCCGGCTTGCCCGACTCG 13854 29 100.0 32 ............................. CCCCACGTAGTCGCGCCGGCGGGCGCGCTGGA 13793 29 100.0 32 ............................. ATGTGGTTTGGCAATATGATAGCGTGATCACA 13732 29 100.0 32 ............................. ACTTTTTTCAACTTTTAGGTGACTACGTATTT 13671 29 100.0 32 ............................. TCCGACCTCGCCCGGCTACAGCGTGCGTTTCC 13610 29 100.0 32 ............................. CAAGAAGTAGCGCCATGGCCAAGAACTGGATC 13549 29 100.0 32 ............................. CTAAGGAAAACCGGCCGGCTATCTCTGTTATC 13488 29 100.0 32 ............................. TACCAGCGCACCCTATGCTTCTTCACTCTGCG 13427 29 100.0 32 ............................. ATGCGGTGGCCACCGTGAATGCGGTTGTAACC 13366 29 96.6 32 ...........A................. TCATTTCTCGCCCTCGATATTAGCGCTTCCTT 13305 29 100.0 32 ............................. GACCACGCCTCCTGCTGCTTCTCGCTTCGCGT 13244 29 100.0 32 ............................. ACGAAACCGAATCGCGCGTCAGAGCCGTCTTC 13183 29 100.0 33 ............................. GAGCTGAAGAATGGAATTCCCGACGCAACCTAA 13121 29 100.0 32 ............................. GGCGCAGATCCTCGCCCGGTCCACCACGCAAG 13060 29 100.0 32 ............................. ATGGGCATCGGTTACGAGGCCGTCGAGCTGCC 12999 29 100.0 32 ............................. CCGCCTATCAGGACGCGGACACCCAGATGAAT 12938 29 100.0 32 ............................. TTGGGTACCAATCTAGCGCGTCCAATTCCGTG 12877 29 100.0 32 ............................. TGGTCCGATTCTGCCGACCGTCGACACCAACA 12816 29 100.0 32 ............................. GCATGGCGACCTTGGTTCGAGGCGCGCCCGGA 12755 29 100.0 32 ............................. TGCTCATCGATATCCTCCAGCAACCCGGCATG 12694 28 96.6 32 .....-....................... TCATCGATGCTGATACGGAGCTGAAACGCAAT 12634 29 100.0 32 ............................. TCGCGCCTATAACCGTGCCGAGGATCATTGCG 12573 29 100.0 32 ............................. GCGGCCTATGAGGAGTTCTAGCCCCCCCGCCT 12512 29 100.0 32 ............................. CCGATTTTGTCCTGACTGGCCCGGATAACCTT 12451 29 100.0 32 ............................. TTCGGTGTAGGCAGCCTGCAGCTGCTCACGCA 12390 29 100.0 32 ............................. TTTTGTCCATGAGAATGCATGAATATCTCCGA 12329 29 100.0 32 ............................. TCGAGTACCATCACGCGGTCTGCGAATATGCT 12268 29 96.6 32 ..............A.............. CTGCAGTTGGATTTCGAGCAACAAACCTACGC 12207 29 100.0 32 ............................. TGCCGGCCGCCCTGCAGCCGTATTTGCCAAAA 12146 29 100.0 32 ............................. AGTTCGCGCGCTCGATTGCGAAATGGGGGTAT 12085 29 100.0 32 ............................. AGGGCGTGGCGCTGGGCCGTGCGAAGTACCGC 12024 29 100.0 32 ............................. CCAATACCGTTTTGCCGGCTCCCGTTGGCGCT 11963 29 100.0 32 ............................. ATTCGCGAACAACTGAATAGCAACGGCCCCGA 11902 29 79.3 0 ......T............T..C.GT.G. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : CGGACATCGAGACGATGCTGGACGCCGGCGGCCTGGATAAGCCGGAGTCCCAAGGCGTGGTGGACGCGGCGTTTCCGGAGGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAAAACGCGCCGCCCCGGCTGCGTGGCCGGATGGCGATCTGGCTGCTGGAAATCCGCGCCGGCGTTTACGTCGGCACTTACAACCGGAAAATCCGCGACTACCTGTGGCAACAGGTGGAGGAGGGGCTGGAGGACGGCAATGCGGTAATGGCCTGGCAGGCCGTCACCGAGGCAGGCTTCGACTTCGTCACCCTAGGCGCCAACCGGCGGATGCCGGCCGAGTTCGACGGAGCCAAGCTGGTGTCTTTTTGGCCTCCACCCGGGGCGGATGGGGCTGGCGAATAGGATGTTGTCGGCTTGGGCGGAAAGGGGAGTTGGGTTCTTTAAAAATCGGTAGATTTTTTGGAGGTGTTTTTGTTTTTAAAAATCAATTGCTTGCAATTGGT # Right flank : ACTAAAATTCGGCAAGTTACGCTTTGCACTGGGTGTCCCGCACTCCGCGTACCTCCTACCTACTGTTGCATCTCGCTTAGATATTGCGTCAGCCGCAGCGTCAGGCTGGCGCGGGCGGCGTTGGCTGGCCATACCGCGTACACCCCCAGAGCTTCCACCTGCCACTCGGGCTCGACTTCGCTCAGCCTGCCGGCTGCGATGTCGTCCGCCGCCAGGAAGGCCGGCGGGGTGGCCAGGCCGCAGCCGGCGATGGCCAGCTGGCAGACGGCATCCAGGCTGTTGGCGCGGATGGCTGGCTGGATGGAGAAGCTGTGCGCCTCGCCGGCCGCGTCTAGCAGGGTTTTGTGGTCGGGCCGCATGCGTATGCCCAGCCAGGGCCAGTCGGCCAGCTCTTGCGGATGGCGGGGCGCGGGGCGCGCCGACAGCAAGGCGGGCGCGGCCACCAGCAGGCGCGGCATGTCGAACAGGCGGCGCGATTTTAGCGCGCTGTCCGGCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25720-24776 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIW01000132.1 Chromobacterium subtsugae strain Cv017 Sca_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25719 29 100.0 32 ............................. TAGGAGGGCGGACATGACAGATCGCAGAATTG 25658 29 100.0 32 ............................. TTCTTGTACTGGATGTCGAACACCACCCCACG 25597 29 100.0 32 ............................. TCATCGATCAGTACCTCGAGGAACGATCGTTC 25536 29 100.0 32 ............................. GATGCGCATCCGCACCGATTCGATTTCACCTA 25475 29 100.0 32 ............................. CGATGGTCGAGTGGTTGGCTTTAACGGAACGC 25414 29 100.0 32 ............................. GAGGCCGTGCATTTCGGCAACGTGCTGGAGGG 25353 29 100.0 32 ............................. CTCATCGAGCGATTCGTTGGTACTGACGCAGC 25292 29 100.0 32 ............................. CGGGTGCCATTGAGCAGAAATTGCTGGGTCGG 25231 29 100.0 32 ............................. GCGATGATCCGGACGATGATGACGACGACGGC 25170 29 100.0 32 ............................. AGTTGCGAATCACCGCCAATTTCCTCCGTTTC 25109 29 100.0 32 ............................. AAAAAGGATTAATCAAAGCCGGCCCAGCTGGA 25048 29 96.6 32 ............................T TCTCGTCTCCAAAATGGTAATGATCCCAGTAC 24987 29 100.0 32 ............................. TCTAACAGAGCAGTTACGCCAACGAAGCCAAA 24926 29 100.0 32 ............................. CCGAATCCGCCCAACTGCTGGCCCATGTAGCT 24865 29 96.6 32 ............................C GCTGGGCATGGGTTGCCCCGAGATCCGACGCG 24804 29 89.7 0 ........................GG..A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : TTTTCCAACGCCTACGCCGACAATCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCAGGCTGCCGCAGCTACAATGCGCCGACCGCGCCTTCCGCCCGGTTCACCTGCAACTGGCGCTGCAGGCGCTGACCGGCTTCGTCTGGCTGAACGCCGAGCGCACGGCGCAGCAAACCCGCTTCGCCGACGGCAGCCGCCTGAGCGCCAACTTCGGCGCGACGGCGGTGGGCGAGGGCGATCAGGCGCTGCCGCCGCAAAGCCTGAGGCTGGAGCTGGCTGGCCAGCCGCCGCGGCTGCTGCGGGTGGCGGATTGCGGCGGGGGCTGATGCGCGGCGATAATGCCGTTGTCGTTTTGCGGGCGCTGTGCCTGCGGTGACCTCCGCCGCGCTGGCCGCAATTTGGGTACGGAATTCTCGGTAGGATTGGGATGCGCTTTTTTGTTTTGAAAAATCAGTGAGTTGAATTTGGT # Right flank : CGGCTTGCAAACGTGATGTGCGGCTTGTTTTTCTGGATGGAATGTCTCGGCTTGTGCCTGCCTGGCAAAATGCCGATAATGATTGAGCAAATTGCCTGATTGGAGATTGCCATGCCCGCACGCGCCGCATTCCGGCCCGACCCCGTTCTCATCCGCCGCGCCACGGTCAGGGAGGGAGAGCGCCGCTCCCGCCAGTCCGACTTGCTGGGCGCGCCGGTGAGCAGCGATTACGACATCGTGAAAGAGGTAGCCAAGGGCTTGGATCCCGGCGTGATCACTCGCCTGACCGATGAGGGGCTGACCCGGCGCGAGCTGGAGTTCGTCATTCCGCCGCGTACGCTGACCCACCGCATCAAAAACGGCGAACGCCTGAGCACCGACGAATCCGAACGCAGCGTGCGGCTGGTCAACCTGCTGCTGCAGGCCGAGCAGCTGCTGGGCGGCAAGGAGGCGGCAACCGCCTGGCTGCGCCAGCCATTGCGCCGTTTCGATGGCCGCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 31686-30070 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKIW01000132.1 Chromobacterium subtsugae strain Cv017 Sca_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31685 29 100.0 32 ............................. AAGCTGAACCCCTTGTGCCTGCCCTCCTCCTT 31624 29 100.0 32 ............................. GGATTTAACCAGTTTCTTGGGGTCGGGGTCTG 31563 29 100.0 32 ............................. CGCGGCACGACGCTCGTTCAGCGTGCCGCAGA 31502 29 100.0 33 ............................. GACGTCTTAAACATGATGCTGGGATCTTTGGGC 31440 29 100.0 32 ............................. GTAGTGTCGTGGTTTGAGAGAAAGGCCTCCCA 31379 29 100.0 32 ............................. GTCCGCGACGACTAACTTTTTGCCGGGGGGGC 31318 29 100.0 32 ............................. GTCAGGGCGCACATCCAAGGGCAGTACTCGGC 31257 29 100.0 32 ............................. GCGTGATGATGAACGCCGACTCTCGCCAGAAT 31196 29 100.0 32 ............................. CGGATGCTGGGGCCGGTTACGCTGCTCTTGCC 31135 29 100.0 32 ............................. GCAACTGAGCCACGCCGACAACCGTGCCGCAC 31074 29 100.0 32 ............................. GTTCATGTACAAAGGGGTCGAATGTAGAGAGA 31013 29 100.0 32 ............................. TCCTCTGGATTTCAGGCGAATGGGATGCAGGT 30952 29 100.0 32 ............................. TTCCCGGATGGCCTGAAATGGATTTGCGGCTT 30891 29 96.6 32 .......T..................... TTACCTCCGGGCGCGATTTTTGTTTGTGACGA 30830 29 100.0 32 ............................. CAGTTCCTTCCGGTGAACCACGATGGCGATGT 30769 29 100.0 32 ............................. TTCCTTTCGCCTACGATCAGCGCGGAGGAGAT 30708 29 100.0 32 ............................. TAGCCGGAGTTCGGCACCGTCGGATCGGCCGT 30647 29 100.0 32 ............................. GAGCAATCAGCCATGCGCCTCTACCTCTCCGC 30586 29 100.0 32 ............................. GCGGGATCCGATGTACTGCTGTTCCAGGGCGA 30525 29 100.0 32 ............................. ATAAACCGCGCTTCTGATGATTGCGGTCAGGT 30464 29 100.0 32 ............................. GTGCCGATGCCGCGCATGCACTTCGCCATCAT 30403 29 96.6 32 ...................A......... CCGGCGATGTACTGGTTCTGCACGTCGAACCC 30342 29 100.0 32 ............................. GCCGTGGCGTCGCCGCCGGTTACCACCAGGGC 30281 29 100.0 32 ............................. GCGAGTGGTTTTCAGGCGAATGGAATGCAGGT 30220 29 100.0 32 ............................. TGGGGGTCCGGTGTCAGGCCGTAATAGGCGGC 30159 29 100.0 32 ............................. TGGCTGGTGGGGTTGGGGGGAAACAGGCCACT 30098 29 89.7 0 ..............C..........CT.. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCACGCGAGTGGGGATGAACCG # Left flank : GCGTGCGCGCGCTCCACCGCCTCGCGGATGTCCTTGACGCCGGCGAAAACGGCGGAGAGCGGGATGAACTCGGCATCGAAGCTGGCGGCGAGTATGCGCGCCAGCGTGGTTTTGCCGACGCCTGGCGGCCCCCACAGAATCATCGAATGCGGCTTGCCGGCCGCCACCGCCAGGCTCAGCGGCTTGCCCGGCCCGATCAGGTGCTGCTGGCCGATGACATCGTCCAGCCGCGCGGGGCGCAGCGCTTCGGCGAGCGGCTTCTGGGGTTCGGCGGCGAACAGGTCGGGCATGGCGGGCTTCGGGCGGGATATTGCGGAGCAACAGTATAACAGTTGGCGGCAGGCATGAAAAAAGCGCCAGCCAGGCGTTTTGGGCGTGCATGCTTGCGGGATGGCGGCAGGCTATGGATCTGGGCGATTTGAGCGAAGTATTGTTCCGGAAAAATCGGTAGAATTTGGGAGTGGTTTTTTATCTTTAAAAATCAGTGGATTGAAAATGGT # Right flank : CCTGTATCGAATGCCGGCATGAAAAAAGCGCCCTTGGGGCGCTTTTCGGCATCACGAGCTGAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGTACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGTTTCAGTACCTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACTACGGTGGTCGGCAGTTCTACGGAGATGGCCTTGCCATCGTAGAAGGTGACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAACTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGAACCACCACGTCGAACTTGTCGTCCGCGCGGTATACGGCTTCGCTGCCGGCGCCGGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGTGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //