Array 1 19633-20520 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAIRY010000031.1 [Ruminococcus] gnavus strain MSK.11.9 NODE_31_length_23674_cov_276.352, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     19633	    32	 100.0	    35	................................	TCTGCAGTCAGGGACCATAGAAAGTGGAAGCATTG	
     19700	    32	 100.0	    33	................................	TGCAGGAGCAAAAAACGCAGGATGGTCTATACA  	
     19765	    32	 100.0	    34	................................	TTCCAATAGCGGATATGAGGGAGACTGGGAAATG 	
     19831	    32	 100.0	    34	................................	ATTGCCGTCAGGATACACAACACTGGCGCAGAAC 	
     19897	    32	 100.0	    34	................................	TGCATAATGATAGAAAGCATATGCATACCCATAT 	
     19963	    32	 100.0	    33	................................	AAGTTCCGGTTGCCAGAAGGGATGATCCTGACA  	
     20028	    32	 100.0	    34	................................	ACTGATGAGACAGATACTATTATCACCGGAGTGT 	
     20094	    32	 100.0	    35	................................	ACCGTCCAGAGTTATGCGAGACCAAGTCGGAAAAT	
     20161	    32	 100.0	    34	................................	AACGTAAAATACAAACTAATCAAAAAGGAGAATA 	
     20227	    32	 100.0	    34	................................	CAGTCCATAAGCGCAAGCTCCGGATACTCTTCCA 	
     20293	    32	 100.0	    34	................................	GCGATATCATCTGCCATGCTACTGCCGCCGGAAT 	
     20359	    32	 100.0	    33	................................	TATGCTCATTTGCCATGGTATGTTTTTGTCTTC  	
     20424	    32	 100.0	    33	................................	CAGGCGGGACTTTCGGATAATTGGATCCATTAA  	
     20489	    31	  90.6	     0	........................-.G..T..	|                                  	T [20517]
==========	======	======	======	================================	===================================	==================
        14	    32	  99.3	    34	GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	                                   	       

# Left flank :   ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT
# Right flank :  TGTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAACACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATAC

# Questionable array : NO	 Score: 9.22
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.00,-5.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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