Array 1 60474-60106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRI010000024.1 Streptococcus thermophilus strain Brie1 Contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 60473 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 60407 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 60340 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 60273 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 60207 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 60141 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 31 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ACGATTTTATTGCA # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 897-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRI010000025.1 Streptococcus thermophilus strain Brie1 Contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 896 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 830 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 764 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 698 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 632 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 566 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 500 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 433 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 367 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 301 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 235 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 169 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 103 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 37 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124846-126398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRI010000008.1 Streptococcus thermophilus strain Brie1 Contig_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 124846 36 100.0 29 .................................... TTCTAGCGAACTTCGCCATACCTTCGCCG 124911 36 100.0 30 .................................... TCCACAAGATTACAAAGCAACGCAAGACCT 124977 36 100.0 30 .................................... ATGATATCAAATGTTATTACAAGGGATTTA 125043 36 100.0 30 .................................... ACCTAAAAAGGTTGATAAAACAGTTAGTAT 125109 36 100.0 30 .................................... GACGAGGAGCTCTTGGCAAAGCTTACACAA 125175 36 100.0 30 .................................... CTACGAGTGCCCCTCGTTTTTTCATAGCCT 125241 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 125307 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 125373 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 125439 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 125505 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 125571 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 125637 36 100.0 30 .................................... TACCAGCACGTTTAGCACCATGAAGCCCAC 125703 36 100.0 30 .................................... ATGATATCAAATGTTATTACAAGGGATTTA 125769 36 100.0 30 .................................... ACCTAAAAAGGTTGATAAAACAGTTAGTAT 125835 36 100.0 30 .................................... GACGAGGAGCTCTTGGCAAAGCTTACACAA 125901 36 100.0 30 .................................... CTACGAGTGCCCCTCGTTTTTTCATAGCCT 125967 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 126033 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 126099 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 126165 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 126231 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 126297 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 126363 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAGGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : AC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 24-1708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRI010000009.1 Streptococcus thermophilus strain Brie1 Contig_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 90 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 156 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 222 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 288 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 354 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 420 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 486 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 552 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 618 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 684 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 750 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 816 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 882 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 948 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 1014 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 1079 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 1145 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 1211 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 1277 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 1343 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 1409 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 1475 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 1541 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 1607 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 1673 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TAAGCCGTGTATTTTGCTAGGTAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //