Array 1 9784-8434 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUER01000034.1 Salinivibrio kushneri strain MA421 scaffold34.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9783 28 100.0 32 ............................ TGCTGGCCGACTTGCCGGGCCACACCGTGCTG 9723 28 100.0 32 ............................ TGGATAGATAAATTGAAACAAACCCTCGCGCA 9663 28 100.0 32 ............................ TGCATGGCTCTCTAGAGCGGAATAGTCAGGAT 9603 28 100.0 32 ............................ ACAAACTGAAAACCTCCCCACTAGTTAAACCC 9543 28 100.0 33 ............................ TGAGTGGTCTGCAGTCTTTGAATTGGTCGATTT 9482 28 100.0 32 ............................ ATGCCAACTTTAATAATGACTCGTAAAATCAA 9422 28 100.0 32 ............................ TCAAAGAGACCGCCAAAGCGTGGGGCATGTCA 9362 28 100.0 32 ............................ GCTCTCTCGTTCTGTGCGATGGCTGGCGGTAT 9302 28 100.0 32 ............................ GTTACCGACGGCATCAACGGCCATCGACAAAA 9242 28 100.0 32 ............................ GCAATCGCAGAGACTGCGAGATATCGCCCTCA 9182 28 100.0 32 ............................ TGCGAAAAGTACGGCTCGATGCTTTCGCCGTT 9122 28 100.0 32 ............................ TTTCCCACCTCCCTCGATATATTGAAAAAGCT 9062 28 96.4 32 .................T.......... GTCCAGCCGCGTGAGTGGGACGAGAACCGCGG 9002 28 100.0 32 ............................ CGCTGGCGCGACAATATCAATGCTTTTACCGT 8942 28 100.0 32 ............................ AGCCATGATTGCTCTCGCTGTTTGTCTTTTGG 8882 28 100.0 33 ............................ CAACGAATCGGCGAAATTGACGCGCACCTGGCC 8821 28 100.0 32 ............................ TGAATGCTTATGAAAGTAGGACTGGCGGAACA 8761 28 100.0 32 ............................ AGCAAAAACATAGCCCGTGCCAGCCAGCAAAA 8701 28 100.0 32 ............................ CTACGTCACCACACACCAAGCAACGTACCGAC 8641 28 100.0 32 ............................ GTTTTCAAACGCGACCATCGCCGCGAGCACTG 8581 28 100.0 32 ............................ GTTCGTGCCATTTTTTCGCGCCCGAAGCGGTG 8521 28 100.0 32 ............................ GATAACCTACGACTTTAAATCACAGGTCACTT 8461 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCACGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGGCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTACTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTCACTGACAATTATTACGTTATTCTATT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGATTCACTTACAAAAAGCGCTATATTCATTATTCATATTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 72646-73117 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUER01000015.1 Salinivibrio kushneri strain MA421 scaffold15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 72646 37 97.3 37 ......A.............................. AGCGACAGGCCCCATGAAAGAGGCATACACCAAGCTA 72720 37 100.0 36 ..................................... AGCTGGCTGGCATAGTTTTGATATGCTGCGCTGTAC 72793 37 100.0 36 ..................................... AGCTTTCTATTTATTCATTTAGCCGCGTTGTCGCTC 72866 37 100.0 37 ..................................... CAGGCGCATTCCGCGCTTTGCCAGAGTTCGATGCCAT 72940 37 100.0 35 ..................................... GAGGCTAAGAAGAAGCAGCCCGGCACACACAACAT 73012 37 100.0 32 ..................................... GTTCAAGCAAGGCATCGGCCGTCTTGTTAGAC 73081 36 91.9 0 ............................-.G.C.... | C [73116] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 98.5 36 GTTTCAGTGGCTGACTTGTTGAGATAGGCTCTGAAGC # Left flank : GCGGAAGAAAGCCAAGACCCCGCCATGCAATAAGGCGGTAACCTCCTAAGCAAGCAAAGCGTGAGTGCCGCCACATTGGCGGCGCTTGTTTATCCCACCACACGCTAAGTGCTCAAAAAGCATACTGAATTCGCCCCCCTTACAGCTAGACACCCTGTGAGCCTTCCCCTATAATCCCATTCCATTCGGCCCCTTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCCCCAGTTCAAGTCTGGGAGGGGCCACCAGTCATAGCAAGGCGTAGCAGGTTAGTACCTACTACGCCTTTTTTGTACCTGCTGATTTTTAGTCAAACACTTAGTCAAACAAGGAACGAGTACAACGCCCGTTTTCGCATTAGAAAAAATCTGTTGTCGCGATAACGACGTGAGCATTTCGTATGAGCAAAGCGCCTCAAATCCATTAATGTTAATATTGCTTTACCCAAGTAAGCATTTGAGTGACTTCGCTATTTGGCGAGAATT # Right flank : CAGTTTAAAATTGACCCACTTATCGGCGTTATCGCCGAAGTAAAACTGACCCACCCACGTAATTAATTTTTGCTTTCAGATAAACTGTCCAAAGCCGATGGTACGGTTCCAGCCACCTTCTTTCCTCGTAATCGGTAGCTTTCACCGCTGATTTGTACGATGTGCGAGTGATGCAGAAGCCTATCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGCTGACTTGTTGAGATAGGCTCTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 125925-124375 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUER01000007.1 Salinivibrio kushneri strain MA421 scaffold7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 125924 37 100.0 35 ..................................... TCACAAGTGCGCTAAGAAAGCACCGAGTGGTAAGT 125852 37 100.0 33 ..................................... CTGGGTTGGCTCGATAAAATATGCGAAATCCGA 125782 37 100.0 36 ..................................... CCCCTGGGAGACGTATGCAGAGAATGTGGAGGTGTT 125709 37 100.0 36 ..................................... CCGGCTCGACTTTCTTCGTAATGTTCCCCTCGGTTG 125636 37 100.0 34 ..................................... TCATAATGGCCATTTGCACAAACCGACGGTAAAC 125565 37 100.0 36 ..................................... CCATCGCGAGGAACCAGGTAAGCGTGCTTTTCGGCT 125492 37 100.0 36 ..................................... CTGGCGGCCAAGAGCAGTACAGCGAAATGGTGCAAT 125419 37 100.0 34 ..................................... GCGGGTATGCGTGGTATGCCGCAGATACAGACGG 125348 37 100.0 35 ..................................... TTTTCAGCACGGCTTCTAGCATAGGCGCGTGGTCA 125276 37 100.0 35 ..................................... ACAGAAAACAGCAAGCACAACAGCCCTCACAGTGA 125204 37 100.0 35 ..................................... ACCGGATTGCTGGAAGCTCCCATTCGTACCACGGC 125132 37 100.0 33 ..................................... GTCATGTGCTTAATCAACCCCTCTTTCATGCGC 125062 37 100.0 35 ..................................... ATGACTTGGGGCGTATCAGACGGACGCACTGACAT 124990 37 100.0 35 ..................................... ATTAATCGCGGTGGACTGAGAATGTGGATTGCTAA 124918 37 100.0 35 ..................................... GGTAACACTTTCTTGACGGCCTGGACGGTCAACAC 124846 37 100.0 36 ..................................... CTAAAACGTATCGCGCTTGATACCTACGACGTAAAA 124773 37 100.0 35 ..................................... TTGACCCGTTAACAACAACAGTGATTGTGTTTTTT 124701 37 100.0 35 ..................................... CTGGAGACAGTGTGTTAGCCATGTCAACTCGCCTG 124629 37 100.0 35 ..................................... CCGATGAATATCTTTATGTCTTATGCGATTGCCTG 124557 37 100.0 35 ..................................... CGCGAATTTTGAATGTCGTCTGCAAACACGCTGGC 124485 37 100.0 37 ..................................... TCCTTGTTGCGGTACTTGGGCGCGGCCTGTTTGGCTT 124411 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 100.0 35 GTTTCAGTGGCTGACTTGTTGAGATAGGCTCTGAAGC # Left flank : CGTATTCCTTGAGATACCCAAGTCCTTTGCAATGCGGCGAATACTGCGCCCTTGCTGATGTAAAACGTGTATTTCCACGAGTAGCTCCTGATTGATCATAATCCGCCGCTTTGTCCATGTAACGAACGGATAGTTTGGCTCAGGTGGGTCAATTTTAAATCGACGTTAGTGGGTCAGTTTTACATCGGCGCTGACAATAGGCTCTGAAGCCACGAGAAGTGTTATACTCGTTATCACCTGTAGTAAG # Right flank : CCCCTGATTTTTTGTTGTTGATACAGCAAGTTATTAGGGGCTCAGCGCCTATTTTTTTCGCAAACCGCTTTGATGTCATAAAATGGCGGTATTTTGCGAACATGCTCCTTAGACAAAAATAATCTTCATCTGTCATTGCAGTACCTCAAGTACTCGCACTGTGCGCATTTGCTCTCTGTTGCGCTTGAATGCGGCATACGATGGCTGGAGAGTGTTTGCCTCACCGCATGGAGTGTGGTTAGGCACTTGTTCTTTATTTTATCATCTAGCGTGATCGTGTACTGCTTATTTGCGCTGCCTTTTAGTAATACCCCCGCAACCACTTGCCGTTGATAAGTTTGCTCCGCGGCAAGCATATAAGCGTACAGTTGGACCTTTTGCGCATCGGTAGGTTTGCCCTTATCCACTTTATACTCCACGACCACGCACTTTTCTTCATTGAAGATTAGCTCGTCGATATAACCATGAATGCCTAACGATAGCGCTTGGACATGCGCGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGCTGACTTGTTGAGATAGGCTCTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2541-3348 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUER01000014.1 Salinivibrio kushneri strain MA421 scaffold14.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 2541 28 100.0 32 ............................ TATAAAGGGTTAAGCGGCACACGTTCTTACCG 2601 28 100.0 32 ............................ CTTAAACAATCGCCTTTGTGCTCTCTCATAAG 2661 28 100.0 32 ............................ TGTTGAGCGGACAATTGTGCGGATTCGTTGGC 2721 28 100.0 32 ............................ AATACAGGCTTGCTCGAACTGCAGGCGTAGTT 2781 28 100.0 32 ............................ GTTATCACCACGGTATAGAGCTTTGCTGATGA 2841 28 100.0 32 ............................ GTAAAGCGCAACCCCTCTTCAAGCAGGCAGTT 2901 28 100.0 32 ............................ CAAACGAAAAACCAAAAACGAGGCGATAGGCG 2961 28 100.0 32 ............................ ATTTCAATGTGGTCTTCTCGTGGGTTCTGGCT 3021 28 96.4 32 .............T.............. GGAACTCTATAAGATGATAACCTTAGCCACAC 3081 28 100.0 32 ............................ ATTCCAAACTCCCGGCTTGTAGATGTACTTGC 3141 28 82.1 150 .............T.......G...GTG ACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTT 3319 28 82.1 0 ..C...CTA..................G | G,T [3323,3344] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 12 28 96.7 43 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACACCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATATTGGCGACCGTACCGCACTTTTAAATTGAACAAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTAAATACAAATAATTGCAATAGGTGAGTTTTAACAGGGTAAAAAGATGATTTTTACCCTAACAGCCTGTTGCAGCTTTTTTTTATTGGTTTATTCTAT # Right flank : GAGAACGAGATCTCGTTGGGTTACGTGTTCATTTACCGTCGCTAGAGTCGATTCGGCGGTGCACCAATGATTTTTAAATCCGCTTTTCTGCGCTTTTTCATCGTCGCGTAGAAATTCTCGTGCGAGCTAATATTAAGCAGGTAGAGCTCGAGTTTGTTTTCAATCCAAGCGTAGCCAAGTAACACCTCTTGCCTATCGAGCTTGAACTTGTGCACCCAAAGATAAGACAGATCGCCTTTTTTCTGGGTGCCGAGCGTGGGCTCTTCAATAATTCTGTCTATCTCGTCCTCGACCACTTCACACTGCGCGTCGGACAGCTTGTTCATCTGCTTTTCAAAAACACGAGAGACGAAAACATCAATCTGATTGTCTTGGGGTCCGTCGCTCATAACGTTTTACCTTACCAAGTTTGACTTCTTCAGATGCAATCAGCGCCTCTTGCACAAAGCTGTAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCAATTTTTGCCCAGT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-1.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4214-5968 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUER01000014.1 Salinivibrio kushneri strain MA421 scaffold14.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 4214 28 100.0 32 ............................ TGGAGTGGGTGACAACGGACACCGCCCTGGTC 4274 28 100.0 32 ............................ TTTTGGCGCGCGCTGGCTGTAACCATCACCAA 4334 28 100.0 32 ............................ GAGCTGGCACTTTCTGGCTTGCGCATCGGCCA 4394 28 100.0 32 ............................ AAACCGAGCCTACTCATTAAGCACCAAAAGAC 4454 28 100.0 32 ............................ CCGCGTGTCGATTCTCTCCCGTTCACGGCACC 4514 28 100.0 32 ............................ AATACAGGCTTGCTCGAACTGCAGGCGTAGTT 4574 28 100.0 32 ............................ AACTGGAACCTAGTTACACAATACAAATTAAA 4634 28 100.0 32 ............................ GTTTTGGAGGAATGACAAATGCAGTATAAACC 4694 28 100.0 32 ............................ CACTTACCAGGCTCGCGCTTGGCGAGTTATAC 4754 28 100.0 32 ............................ AAATGAAATTGACGCTAAAACTAAAAACAGTG 4814 28 100.0 32 ............................ AACCGATGCCGCAGGCGCGCCAGGGTTTGCCA 4874 28 100.0 33 ............................ CTGTTCGTCATCGTGCACACCTGCGGTCTTGCG 4935 28 100.0 32 ............................ GGTCCACCAAATTTCGCGACGCAGTTTGAGCG 4995 28 100.0 32 ............................ GTGCACCCGAACCACGTTTATCAACGATGTTT 5055 28 100.0 32 ............................ CTCTACCCCCGGTATCTCACAGTCGCACTCTA 5115 28 100.0 32 ............................ GCTCTCTCGTTCTGTGCGATGGCTGGCGGTAT 5175 28 100.0 32 ............................ GTCTAACGCGTTTAGGAAGCCTGACAAGGACA 5235 28 100.0 33 ............................ CTGTCGCTGTGTTGCATTCATTTCAATGCCTTA 5296 28 100.0 32 ............................ CTCGAGCTGTTCGAGATCGTCACCAATACAGG 5356 28 100.0 32 ............................ GTCAGCGCTTTTTATAAATGTGCCGAGTTTCG 5416 28 96.4 32 .............C.............. CTCAACCAATGAGGTTTCCACGGCTTTACCGC 5476 28 96.4 33 .............C.............. ATGCCATCACTGACGCCATCACCAGTGCTGGAT 5537 28 96.4 32 .............C.............. TCATCGCGTGTATAATCAAAGCCGGAGCGGTT 5597 28 92.9 32 ...G.........C.............. GTGTTGCGACTGTCACTACCAAACGTCTGATT 5657 28 92.9 32 ...G.........C.............. ATGCCGACAAGGCGTCCACTCAGAGCGTCCAC 5717 28 100.0 32 ............................ TGGTTATCATCGAGGACACGGCGGAAATCCAG 5777 28 82.1 135 ............G........G...GTG ACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAAATCACACCAAGCTTGTATGATCGAGTTGGCGTTT 5940 28 82.1 0 ..C...CTA....C.............. | G [5944] ========== ====== ====== ====== ============================ ======================================================================================================================================= ================== 28 28 97.8 36 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGTCTTGGGGTCCGTCGCTCATAACGTTTTACCTTACCAAGTTTGACTTCTTCAGATGCAATCAGCGCCTCTTGCACAAAGCTGTAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCAATTTTTGCCCAGTACTCAATTTGCTTGGGCACGGAGCGCATTTCAGCTTCTGCATGCACTTTTACATCTGACACAAATTCATCATCTAACCGTACACTGGTTGGCATGATTCATTACCTCGTTTATAAATCTTCACAAGTCACTATGCGACAAAGTGTCGCGCCTTGCAACATATTTAGAACTGACACATCTGGCGTGACTTAAGACGGCTCTGCTTCAACATATGTGATAAGTTGATACCCTTGCGACCCTTCTTTTTTGGCCGTTCAAAAATAAGCAATAAATACAGCTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTACGTTATTCTATT # Right flank : AAAGCTTTGCAGGTGTTCCGCTGCTTTGAGCTTTCCTCCTTACCTCTATTTCTCTTACCGTTGACACCTGTCTGGGTTTTTCCTAGAAATGACTAATTTGGCATGCTTCTAGGTGGTTAAACTTTATGCCCTGACTTTAATCGTTGAATATTTTCTATCGATCAATCAAAAACTAATCGACGGGGAGACTACTCCTGTCTAGTTCTTTTTAACCGGTGGCGAGAATCTATTCTACGATAAGAAGGTAGCGATTTTTGGTCGATGTTGTCTGTTGTTGACTGGCAGGAGTTGGGTATGAATATCAATAACAGCATGAAGTTAGTGTTTTTTATAATTGGGGCAGGGATTGTCGTTAGTTTTATAACTATTATTCAACTCAACGGCCTAATGAATAAAGTCGATGAGATGGCTCAGGTGCGATATGAATCGTATCAAACGGCTGATGAATTAAGGCAAAGCTCTGATGACTTGACCCGCTTAGGAAGAACGTATGTGGTGAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //