Array 1 520102-521410 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWZ02000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain HIY0083 NODE_1_length_753619_cov_61.174075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 520102 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 520163 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 520224 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 520285 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 520346 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 520407 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 520468 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 520529 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 520590 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 520651 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 520712 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 520773 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 520834 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 520895 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 520956 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 521017 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 521078 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 521139 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 521200 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 521261 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 521322 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 521383 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 538034-540931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCWZ02000001.1 Salmonella enterica subsp. enterica serovar Tennessee strain HIY0083 NODE_1_length_753619_cov_61.174075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 538034 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 538095 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 538156 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 538217 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 538278 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 538339 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 538400 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 538461 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 538522 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 538583 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 538644 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 538705 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 538766 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 538827 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 538888 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 538949 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 539010 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 539071 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 539132 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 539193 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 539254 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 539315 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 539376 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 539437 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 539498 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 539559 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 539620 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 539681 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 539742 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 539803 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 539864 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 539925 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 539986 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 540047 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 540108 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 540169 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 540230 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 540291 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 540352 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 540413 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 540474 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 540535 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 540596 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 540657 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 540718 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 540779 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 540841 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 540902 29 96.6 0 ............T................ | A [540929] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //