Array 1 27692-27001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000043.1 Parageobacillus toebii strain B4110 NODE_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 27691 30 100.0 38 .............................. ACATCTAAATCCACTTTAAATAGGTTTGCCATCTTCAA 27623 30 100.0 35 .............................. GACCAAGACGAAAAGGGTGTACACATTCTGCACAC 27558 30 100.0 39 .............................. CTGTACTTCCTTTTGCTGACTATAAGCGCCAAGTATCAT 27489 30 100.0 35 .............................. GCGAATACAGGGACGGAAGAAAGTCCGGTATTTAC 27424 30 100.0 35 .............................. ATGATCCATCGCCGCGGCGTTGATAAAGTAACCAC 27359 30 100.0 35 .............................. CGAAGAAGTACCGGGGCGGCATGGCGCCTATTTAT 27294 30 100.0 38 .............................. AACTCGGTGGCTACCACAAAACCTGTGATCTTATAGCG 27226 30 100.0 35 .............................. AGAAAACAGAAAACGGACTGATTGCCGTGTGTACC 27161 30 100.0 35 .............................. CTATGGTACACTGTTTCGCCGGAACGGAAAGCAAA 27096 30 100.0 36 .............................. ATTTTATCCCCAGGTTTTAAGTCCCCCAAATTTTCT 27030 30 83.3 0 .TT....................CCA.... | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 98.5 36 GGGTGTATCTTACCTATAAGGAATTGAAAC # Left flank : GAATTGAAACCATCATTAAAGAACAAACGAGAGAAAAAGGAAAAT # Right flank : ACTGTCGATGAAAGCGTCTATACTTGGGGAAGTATCGTTTGTACCTTGTCTGTAAGGAATTGGGATTTTGTCAATCTCCATCCTTTCTTTTTTTGCGTGGTTTTATCGTGCCGATTGAAAAACGGATCAATATAAAAACCCGCTGATTTTCAATGTTTTTTTACCCGCTTGTCTGCCAATTTTGTGATACAATGAAGGCGGAAATCATAGAGACGAAAGCGGGGAGAAATTCGTGTATCTTGGGGCAATTGAAGCAGGCGGCACGAAATTTGTATGTGCTGTCGGCGACCATGATGGAAATATAAAAGAGAGAGTGACATTTCCAACGACGACGCCAGAAGAAACGATGCGTCATGTCGTCGACTTTTTTAGCCGCTATGAATTAGAGGCGATCGGCATCGGTTCATTCGGTCCGATTGATTTGAACCCGAATAGCAAGACATATGGCTATATCACAAGCACGCCGAAACAAAAATGGGTGAATTTTAATTTTGTCGGTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 96817-96630 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000051.1 Parageobacillus toebii strain B4110 NODE_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 96816 36 100.0 41 .................................... AACTAAAACCATACTTTCTTTCTTCTTTTTCCTGTACGAGA 96739 36 100.0 38 .................................... TTTTTTAATTGCTGTTCTAGAAATGGAACGTCTTTTTC 96665 36 97.2 0 ...............................A.... | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 99.1 40 CTTTTTGAAAGAAGGCCTCGTTGAGAGGATTGAAAC # Left flank : CGAAAGTGCAAGCTGCTTCTTATAAGGAGACGACCCAAAAAAGCGCGGAGAGAGTGGATTTTATCGCTTCTCAGGTACAATTCCAACAGAATGAAAAACCTTCTCCAAAGCGGCCGAAAAGTTCTGGAGAAAGGGTAAAAGATATCAAAAAAAGATAAATTCATTTCCGTTTTGGAAAGATCAATGCGGCCGTCACCGAAGCAACGATATGGATTGGAGAGATAAAGACGAACGGTATCGGATACTGTCCGTCTTTTTCTTGTTTGGTTCCATGGGCTTCTGCACGGTCCAAAAACGGCCAAAAATGGGGGGAGGTGTACATGAAGATTTTGCTTTCATGCACTAAAGTGCAATGTTGATATATCAAGGCTTTGGACATTTAACGATTTTGGCCAAACCGTCTAGTTTACATAACAACATTTTATTTTTTGCGGGGTTCACAGGGGTGTACAAAAATGCCCCTTGCCGCCCTAGAGAATCAATGGTAAAATGAAGGTGCT # Right flank : TCGATATTGGACCAAAATGCATAGATGCTCTGGTAGCTTTCTTAAAACAAAAGGTGGTTTTGTTCAGAGGATAAGTACATCCCATGATTCAGATTTTTTATCTGGATGCTTCCGTATTAATGGAATCCGTTAAGAAAAATCAAGGTTTTCCAGTGCGGCAAGCGGAATTTTTTGCAGCAAATGCATGTGAACAGCCAGCTCTCTAACAGAGGGCTGGCTGTATTTAGTATGAATCCATCGCAAGTATGGCTGGAAGGATTTTCAGACTGATCTATTTTGTTGTACTATATATAAATAAAGGCAATTGTTGCGGGGGTTGCTTTATACGTCTGTTGTTCTGCTCTATGTCGTGTCGCAGTTTATGTTTGAAAGCGTCATTCGTTATAGCACCGGGATTGGCGATGGCTGTGCCTATTTTCATATTAACGGTGAAGTTAAGGCATGTTTGACTGTTTTAGGTCCTACGAACCGATTCATTTCTGAAGCAATAGAGAAATAGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTGAAAGAAGGCCTCGTTGAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1601-1214 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000059.1 Parageobacillus toebii strain B4110 NODE_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1600 35 100.0 39 ................................... CCAGCAAATGAATTGAATAAAACTTTTCATTTTATCTTG 1526 35 100.0 39 ................................... CACTTCCAGCACGTCACCAAAGAAAACCCCAGACTCATT 1452 35 100.0 38 ................................... CACGCAGTCCGTTGATACGTAAAAACCTCATTTCTAGA 1379 35 94.3 38 ......................T........A... CAATAACGCCTTTTCTTCTTCATCCGTCCAAAAATAAG 1306 35 94.3 20 ...........A..........T............ ATAACCGCACCGCGAACTTC AA [1273] Deletion [1252] 1249 35 74.3 0 T.....A.A..A.AC.......T.......AA... | C [1236] ========== ====== ====== ====== =================================== ======================================= ================== 6 35 93.8 35 CTTTTTGAGAGGTGGCCTCGTTGAGAGGATTGAAA # Left flank : CAAGCGACGAAAGGGGAGGCGCTTGTAAAACTGGCCGCTCATTACGGCATTGATCTGAAAGATACGGTTGTTTTCGGTGACAGCCATAACGATTTATCGATGTTCGCCGTCGCCGGATACCGCGTCGCGATGGAAAACGCCGCACCGGAATTAAAAGAAGTCAGCGACATGGTCACTGCGTCACACGAGGAAGACGGCGTGGCGGTTATTTTGGAAGAGCTGATCGCCAAGCAAAAACAGTGATAATGGGCACCATGCCCTTTCCCCGTCCCGTTGCCGATGCACGGTCCAAAAACGACCAAAAAATGGGGGAGGTGTACATGGCGATTTTGCTTTCATGTATTAAAGTGCGATGTTGATATATCAAGGCTTTGGACGTTTGACGATTTCGGTCAAACCGTCTAGTTTACATAACAACAATTTATTTTTTGCGAGGTTTGCAGGGGTGTGCAAAAACGCCCCTTGCCGCCCTAGAAAATCAATGGTAAAATGAAGGTGCT # Right flank : TGAGCTTGGCATGCTTCCATAGCCTTCCTATTACAATGTTTCTATATAGATGCACATTGAAACATTAACGTCCGTATAAGTGGCTTCCACCCCGGTTATACTGCTCCTAAGTACTTCACGAAGAAAAGGAGCGGAAACGGAATGAAACGATTGAAAATCACCAATGACCATGGATGGACGCCACGAACCCTTCGAAAGGAAGAGAAAAAAATCAAAAACATTTCCCTGCGTCAACGCGTCATGGCCGTTCGCCTCGTCATGGAAGGGTATCTGGGGAAAGACGTCGCTTCCATGCTCAACCTGTGCCGCCAAAGCGTCGCATTTTATGTCTCCTTATTCAACGAAGGAGGGCTCGATCTCCTGCTCGATCGGAAATATCCGCCGGGCCGGGAGCCGTTTTTGACACCGGAATAGCAACAGGAACTGAAACAGACGATCTTGACCCACACCCCGGCCGAACTCGGTTGGGACATCGCTTCTTCTTGGAATACGCGGATTCT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTGAGAGGTGGCCTCGTTGAGAGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 69-1079 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000108.1 Parageobacillus toebii strain B4110 NODE_154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================= ================== 69 30 83.3 36 TG.GAG........................ TGAGGGAATGGCGGAAATTGAGCAGGGACAAGCCTA 135 30 100.0 35 .............................. CGTCATCCAAAAACACACGGGGAGATCAAGACGGA 200 30 100.0 39 .............................. CAGCTTATGCGCGGCATTAGGTATCGCCGCTGAAGAAGA 269 30 100.0 37 .............................. TTTCAACCAATCGCCCGTTTTCAAACCGAATCGGCGC 336 30 100.0 35 .............................. AGTATCGCAAGTCTTTCTGTTTCGCTGTGAAATGC 401 30 100.0 36 .............................. ACCTTGAATCCATTCTGTGTTTTATCGTAAACAATC 467 30 100.0 36 .............................. CTGCAAAAATATATCTTCAATGCCGGAAAATAAATA 533 30 100.0 37 .............................. TCGCCGGCAAAAGCTATATTGAAGCGACTGAAATATC 600 30 100.0 35 .............................. CGTAAAGTTTCCATCAGTTTTCACCGCCTTTCTGA 665 30 100.0 36 .............................. TCTCTTGGCTAAGAATGTGCAGATACGCCCGTTCCA 731 30 100.0 37 .............................. CTATGATTGCGGCCGTAAAATATACCCGAAAAACCGC 798 30 100.0 35 .............................. ATCGCGCAGGAACCGTGGCAGCCGACCGACCGTCC 863 30 96.7 38 .............................T CGCGGTATACAACGCCAAAATCTTTCTCATTCATCCCT 931 30 90.0 89 ....................A...GA.... CAAGCTAAAAAAGGTTCTATTATTGTTTTTATCGTAATTATGAAATTGAACCAGCGTTCCGACGTGATATAATGAATTGGTAACTATTT 1050 30 73.3 0 .........GC.....C...T.....CGTA | ========== ====== ====== ====== ============================== ========================================================================================= ================== 15 30 96.2 40 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : TTGGCTCAAAAAATATTTTAAAAAAATGAATAAAAAATCCTTTGTTTCTGCACTGCTGGGGTGCGAAAT # Right flank : AGTGTTCCGGCAGCTTTCCCTGCACCATGTCAATGTCACATTCTGACCTATATGCGCATTCTCGTTTCTCTCTAGCATAATGCTAGTGGAGAAACGAGTTTTTTTATTGCACTTTTATTTTGTGCATGTTCTAATAGTGATTGATAGGTAACGGAAAGGTTTGTTTTTCCTTTTGGATGATGATAAAGATTTTATTTTCGAAGCAAGGAGTGGGGGCTGATGGAGAAAGAGGCGATCATCCGCTTTGAGCGGGTGACGAAGGAATACGATGGGTTAGTCGTGCTCGATGATGTCAGTTTTGAGATTGAGCGCGGGAAGTTTTATACCTTACTCGGGCCGTCGGGATGCGGGAAGACGACGATTCTGCGTTTGATCGCGGGGTTTACGGAGCCGACGGAAGGAACGATTTATTTTCACGGAAAGCCGGTAAATCATGTACCTGCGAATAAGCGGCAAGTGAATACGGTGTTTCAGGATTATGCTTTGTTTCCGCATTTGAA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 570-1727 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000129.1 Parageobacillus toebii strain B4110 NODE_221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 570 30 100.0 36 .............................. CGGAACGAGATGAATTGAAGAAACAGCTGGAGGAAT 636 30 100.0 35 .............................. CGGGGAGATTGTCACAGAATGGGAGCGACCGCTGA 701 30 100.0 36 .............................. TTTGACTATGTACCGCTCATCCGCTTCCAGAACAAC 767 30 100.0 37 .............................. GCTGCGAGGATGTTGTGAAGGAGGAGCAAGCGGTCTA 834 30 100.0 36 .............................. GAACACATATCGGCGGCATAATAAAACGCCTGTCAT 900 30 100.0 38 .............................. CTTCACTAATCGCTTTTGCCAACTTATGATTTTTCAAC 968 30 100.0 36 .............................. ACTTCATCCACTCCGCCGCTTTTTCGTTCTACTAAA 1034 30 100.0 37 .............................. CTTGCTCCGGCGTCAATTTCACTTTTTCCATCTCAAT 1101 30 100.0 36 .............................. GAACAAAAGATGAAAACGCCGCCGCGGCCGCACTGC 1167 30 100.0 36 .............................. TAACGGGAGTGGTCCGGTTGGTAAAGTATAAACAAT 1233 30 100.0 34 .............................. TGGTGAGCGGCATTGTAACCGTTCCGACTGGCGC 1297 30 100.0 39 .............................. TTTTGAGCAACTGATGATCGGCGATGATGTGATTGTTTC 1366 30 100.0 36 .............................. AATCGAGAGGATACAAAGTCAAAGACCATCGAGCAG 1432 30 100.0 39 .............................. AGTAGTGTGCCAAGCAACAACGGTTATACGGAAGTTCAC 1501 30 100.0 36 .............................. CGCGCAACATCCGGACATTCCTGGTAGAAAGACACC 1567 30 100.0 36 .............................. AAAAACAGCATGTATCGCGGCGACATCATGAACTAT 1633 30 100.0 35 .............................. CTCAGGACAAGAAAGCAACAAAAAAGAGAACGCCC 1698 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 100.0 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAGGAGGAGGTATCCTGAATTTTTCAGCCCCCCTTTAAAAAAACGGCTTCTCAGATTGGCGTATAACGCGTCTTCAATAGCAAAGTAATGGTTTTATATACGGAAGAGAAAAAGCGTCTCTATAGGGCATTTATGGCTTTTTAAAACGTATCCCCTTTTGTTCAATCAAAATTTTGCTATATTTTTTCCCTGATCATTTCTTCTGTTGCTCCAATAAATGCTTGGCAAAGCTTTCAACGGTATATTTTGACCAGTATGGCGTTCCGGCTACTACTAAGTCTTCCTTTGGAAACTTTCCTCTTTTGCGGTAAACAGCAATCTTGTTTTGTGGAAAATGAATTCCTTTATCCTCCAGATAACGTGCAAAATCACTTTGGGTGTAATAGTCCTGGGAGTCTCTAACGATCGAGAAGTTAGGGTTTTTAATCAAATACGTTTCGTTTCTGAAAAACTCCACAATTAGTTGCAACGCAAATTCCAGCCATTCATCTTCAAGGTGC # Right flank : TAAGCTCCGTCAATCTGTCTGTGAAGTACACTCCAGTGTTTTTATCTTACTCACATTTCGCACCCTCCCGACGAAAATCGGGAGGATTTTTTCATCCCGATGTCGAATAGGTCCTTGGTACACAAGGAAAGCAAAGGAGTTTCCACACCATGGACGTTTGAATTCGTGCTATTTATGAAAGTTCCTATTTGAATATAATAAGTGCCATCTTCAAGGATCTTGGCCTCCCTCAGCTGATTGACCGGCTGGTTCCGGTGGATCCCCAATGCCAAACCCGAGCCAGCGATGTGGTCTGGCTGCTCATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3133-1305 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000013.1 Parageobacillus toebii strain B4110 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3132 30 100.0 37 .............................. TCGAAAAGAGTTCTGGCGATTGGTGGGCAGTGCTTGC 3065 30 100.0 37 .............................. AACAGAAGCTGATGGAAAACCCGAAAAAGAATAAAAA 2998 30 100.0 35 .............................. GCGGCTTTCCTAGACCTACTAGACCGCTTGGCTTC 2933 30 100.0 37 .............................. ATCCACTTCATCTTCACTTTGTTTCCAGAAGCGAAAA 2866 30 100.0 35 .............................. TGACAACGCCAACGACCAACAAAATTAAGTACGGT 2801 30 100.0 34 .............................. TATTGGTGGTGACACGATGGGACCGACCGACGGC 2737 30 100.0 37 .............................. AGGAATTGGAGGGAGAGGAATGAACGAAAAAGAACGC 2670 30 100.0 36 .............................. TGTTTTGTACAAAAGAAAAGAGCCGCCACATATTCC 2604 30 100.0 37 .............................. CTTCCAAACGAAAAATAATTTTCCTTCAACACTTGAT 2537 30 100.0 36 .............................. GTGATTCCAATGGCAAAGCCTTCAACAAAGTTCTTT 2471 30 100.0 36 .............................. TCCTTTCTTGCTGAAGCCACGGGCGTGCATAAGCAA 2405 30 100.0 36 .............................. AACTACGCTACCGCCGAGCTAAACAAAATGCAAAAC 2339 30 100.0 38 .............................. AGAAGAAATGCAATCCGTCGACATATTCCATCAGCGCC 2271 30 100.0 38 .............................. TCATGTCTCTTTATTACGATACGGGAGAAGTTGGAGAC 2203 30 100.0 37 .............................. TTTTTTATGTCGGCGCTGTGGGTTGCAGCGGAATGAC 2136 30 100.0 36 .............................. ATGTATGACGGCGAACCGATGGATGAGGAAACAAGG 2070 30 100.0 38 .............................. TTGTACTACTAATCTTCGAGTCGCGACAAGGTCTATTT 2002 30 100.0 35 .............................. TCCAAACAAACCGAAAACACAAGCGTTGAGAAACG 1937 30 100.0 37 .............................. TGCAGAAATTGTCATGTGGAGATTCATCGCGAATTAG 1870 30 100.0 36 .............................. AATGCCATATATAAACACTCCTTTGTCCTTTTTTAA 1804 30 100.0 38 .............................. ATTATGAAGTTAACAAGGCAGTTGTCTGAGATTACTTT 1736 30 100.0 39 .............................. CGAACTAATGCAATACACCGGCCTAAAAGATCGCAACGG 1667 30 100.0 37 .............................. AGCACCGTTGGTAAAAGAATCAAGGAAATTCGCCAAG 1600 30 100.0 39 .............................. TGAGTGTCGGTTCTTCATCGCAATCTCGTACACTCGATT 1531 30 100.0 34 .............................. TCAAGATTCCAGAACGGTCATGGCTGCGGTCCGG 1467 30 100.0 35 .............................. TTATACGAAATGTCATCATTGAAAAGATCTCGCCC 1402 30 100.0 38 .............................. GCAAGCGCCGCTGGAACATCAACAGGCAAGCTCAACAA 1334 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 100.0 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAATATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGTTGTATTTTCTGATATGATAGAAAAAAACTTTTATAACAAATTTCAAGCGTATTTTCATCGATCACCAACAGAGAGGATGGTGATAAAACCAATCAATGTAACGAAAAGGGATAAGGTGATTACTATCTTCAAAGGATTCCGCATTAACGCGTGGAATGGCACGTATGAAATACAAGCTCCGCTTCCTTACGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGTATGTTCGAATTCATTGAATAGTGACATATATTTTTGTCGTCGACCCCTAATAGCGCACAAATCCCAGGGGATCGACGACATGTTTATTTTCTCATTTCTTCCTACAGCCATCAGCACTTTTTCGATATTGACGCAATTTTCAAACTGACGTATACTGTATGTATCCATTATTCTCCATCCTTGATATATTAGTATTTGTTGGG # Right flank : ATGTGACGGGTGAGGATGAGGTCGCCAATGGCACATTTGACGTGATTGCAAGATGGCATGTGGGGTTAAAAAATTATGTGATAGAGTGAAAAAGAGCATTCCAGAAGGAGTGCTCTTTTTTTGGTTTAACTATTAGCTTTTATTTCATTTTCTAACTCTTCAATTTCTAAACGCCATTTATCTCGTGTACTATACAAAATTTCACACACAAATTTTGAAAAGGAATCTTTATTTTGATTTATCTCTTGCTCTAACTCTTTTAGATCCGCTTTTAATTTTTCAACTACTTCTTTTTTTTCGTCGATAGATATATATTCGTAAATTTTTCTCATGAAATACTACTCTCCTTTCTCCCTGAAGAATTGATTAGAGTTAAAGTATTAACCAAGTAATAGTTCTTGCAATTGCGTCAGCAATAGATAGTGAGTAAGTAGACGGTACGCCTGCTGATCGTAATAAGGAATTTAATTTAGTTTTAATTGTACTTTGAGTTAAATCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 15872-13461 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000013.1 Parageobacillus toebii strain B4110 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 15871 30 100.0 38 .............................. TCAAAAGACCCCTGCATTTTATGCCCGTTGCAATTCCC 15803 30 100.0 35 .............................. AACAAAGGAGCGGTTGAAAAATGCCTAAATCGCTT 15738 30 100.0 36 .............................. ATTTTCGGTTGGTCTGTCCAAAAATGCTTGACCCGT 15672 30 100.0 37 .............................. TCGATGCTAGTCTCATCGGTCATTCATCTCTATATTT 15605 30 100.0 37 .............................. TTTCGCGATTCGCGGTAAAAATTCCTGGCGTGTGCTG 15538 30 100.0 36 .............................. CTATGATGTTCGCGAAACGCGACAAAAAGAAACAGG 15472 30 100.0 35 .............................. CTCGACTATCACGGTGAAGAAATCCGCCGGTATAT 15407 30 100.0 35 .............................. TTCTCAAAGAAGTCGGATATTTCACATCCAAGCGC 15342 30 100.0 35 .............................. GCGTTTGAACGTCCGCTTTTCCGTTCCGAACGAAC 15277 30 100.0 35 .............................. AAGGTCAGCAAGTTGGACCGGAAATTCGCCAAACT 15212 30 100.0 36 .............................. CTGTACAAGCGGATATACCAATATCTATAAGATTGA 15146 30 100.0 40 .............................. GTGATTCATAAGCCGTGGACAAGCGCCACTGGGAATGCGG 15076 30 100.0 35 .............................. GAGCGTTCAACGGAATTCACTCGCAACATTGATGT 15011 30 100.0 36 .............................. TACTGTTCCTCGATTTCATACCAACCGCAAAGTGCT 14945 30 100.0 37 .............................. CTCGGGTGTCAGCAATTTCGCTTACTCGGGTGTCAGC 14878 30 100.0 36 .............................. TATGAGGTGGTAAATAAGTGAGCGGCAGAAAATCAC 14812 30 100.0 35 .............................. TATGACCTTAAACATCTGTATCCTTTCTAATGATG 14747 30 100.0 39 .............................. TAGGCACTCGAAAGGGTGTGTTGACCACATTTTGACCAC 14678 30 100.0 37 .............................. TCGTATGTTTTGATCGCTTCCGTCACGCGTGAATCCG 14611 30 100.0 35 .............................. CCTGTTGAAAGATACGACGCTAAAGCCAGAACAGT 14546 30 100.0 39 .............................. CTTGTAGCTTCCAGAACGTAGACGATACGTCTATCCAAT 14477 30 100.0 36 .............................. AGAGATTGTGTAAATCAAGAACAGAACGTGTCAAAC 14411 30 100.0 37 .............................. AGTTTTGGAGTAATGACCAATATGCAAGAACTTTTAG 14344 30 100.0 35 .............................. TCGCGGTCTTCGGCGAACAACGATTGCGAGAGCTG 14279 30 100.0 35 .............................. CGGATTTTAGGATGGACGTTAGAAGAAGCCATTAC 14214 30 100.0 34 .............................. CTGACGGGTACGGTGTTTTGCGAAACCCTTCGTT 14150 30 96.7 34 .............................T GCACGTTCGGCATGTTCGCAATCGCAAGCTGTCA 14086 30 96.7 39 .............................T AACAAGATCGCACGAATCCAGTCATCAAGAAGGGTATTG 14017 30 96.7 36 .............................T TCGTGCCGAAATTTACTGTGCCGCTCCCAACATCGA 13951 30 96.7 34 .............................T TGGGACGTCTTTTTGACGGCTACAGCAATTGTAT 13887 30 96.7 36 .............................T TGGGTATCTCTAATACGCTTCAAGCTTTTGCGCCAT 13821 30 96.7 36 .............................A TCGAGTAATCAAAAGGGGATGGGAACGGTGATATAT 13755 30 100.0 35 .............................. TACGAAAAAATGTTGATACAACAATGTTTTTTGGG 13690 30 86.7 36 ....G.......A........G.......T ATGTTTCATGCTTCCTACACTCTTCACAGATATAGT 13624 30 86.7 37 ....G.......A........G.......T TCTGAATATAACAAGGCTAGAATTAATACTGTTCAAA 13557 30 86.7 38 ....G.......A........G.......T CCGTAGCAGTATAAAATCTCACCTACATCTGGATCCTG 13489 29 80.0 0 AG..G.......A.........-......T | ========== ====== ====== ====== ============================== ======================================== ================== 37 30 97.8 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAAGGCGAATTTAAAAATGAAGATAGACATCGACATTCATGATACAAAAAATGCATTACCATCAGAAGAATGAAAAACAATTTTGTCGAAGTATCTCTTTGCGGCTGGGAGAATGAGGTCGTTTCTTATCTATATAAATCCAGTTTGAAATTCCGACATGTTTAACCAACACTTGTGTCTATGCTGCTCCTAAACGAGTAAATAAGGAAGCAGATCAATGAATGAATAGTAAGCAGATAAAATATATTTCGTGTTTCCAGATTCATCATCAAAATAGGAAGAAATGTAGCGATAGTGCGATCGTATATAAACTATCATTCATGGCGAAAAAATTGTCGTCGACCTCCAATCATGCAAAAAGTGTGGGGGATCGACGACACTTCTTTTTTTCTTTTCTTCCCTACAGCCATCAGCATTCCTATGTATTGACGGAATTTTCAAAATGACGTATACTGGACGTAGTCAAATTGAAAAACGTTGATGCATCAACGTTTTTTGGG # Right flank : TGCAAAAGCTGTCGATAATATTCGTACTTAAAAATCATTGAATTTAGCGGCAATTTTATTGGATTTAATAAAAACGAAGATATTCTGTTATAGATACCGATATTGTTCGCTCTTTATAATGAATGTGATGTTTATCATTCTACAGTAAAGCGTCTGTTTTTCAACTGATTATTTATCTGGTATAATATTGTCCTTTTTTGGTTAAAAAATATAAAGGTGAGTAACCGTTAATTTCACCGTATTTTTTGATGGAATTTTGTGGTCATTTATCACGGAACTAAGACATTTATTTAGTGTAATAAATTACCGTTAATATCTTACTTATTGAAGAATTTAAACATTAATAATGTGATCATTATCTTACCTATCAAGGATTGAGTATATCTTTTAGAGCAAATTTTTATTGTTGCTTTAGCCAACCTCAACCAAAAATTTCAGTGGGTAAATGTGTTCTCAAACGAAAATGATTTTTTTGGATAGATATAGTTTTTAAGGAGCTA # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2983-3242 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQYW01000145.1 Parageobacillus toebii strain B4110 NODE_268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2983 36 100.0 39 .................................... TATGATGAAAAATTTCTTCCCATTTTTCTCCAATTTCTT 3058 36 100.0 36 .................................... ACGTCGAACATTCCTTCCGAAAATACTACATAGTAA 3130 36 100.0 41 .................................... AATTGTTCTCTTTCGTTTTTGTATTCCGATTCTTTTTGTTT 3207 36 91.7 0 ............................A.....GT | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 97.9 39 CTTTTAAAAGACTGACCTCGTTCAGAGGGTTAAAAC # Left flank : ATGGCTATGGAACAGTAATTTAAAAAGTTAACGCCGAATGTGCCTATGAATGTGCCTATTTTTGTTATTTTGAGTTTGTCCATAATAAGTGCCTTGCGTTGCAAAGAAAGGACAATCTCACGTATCATGAAGTGCTTCCATATGCGACGGAAGACAAACCGTTTTCGTATAACGGGACATAAGGCAAACAGCATGTTAACCAGAGAGAACAAGCAGTTTATTTTTAGAAGGGCAAACTACCGGCTGACCTAGGTCAGCCGGTTTTGCTCATGTCGCCGATGCACGGTCCAAAAACGGCCAAAAATGGGGGGGAGGTGTACATGGCGATTTTGCTTTCATACACTAAAGTGCTATGTTGATATATTAAGGGTTTGGACGTTTAACGATTTTGGTCAAACCGTCTAGTTTACATAACAACAATTTATTTTTTTAGGGGTTTGAAGGGGTGTACAAAAATGCCCCTTGTCGCCCTAGAGAATCAATGGTAAAATGAAGGTGCT # Right flank : CGTTCATCGCCTCGATGATCACAAAGCGGTCTAGGGCCTTTTAACAGAACTCTAAAAGAACTCTAAAAGAACTCTTTTACTTCAAGGACATACAAAGTATTGTTTTAAGTGGGAGCTGAATTTCGATTTGTAACAGCAAACATATGCGCTGTAATGATAGTAGAACGAACGCCTTTGCAACGGGAGTAAGTGTAAAGGGCTTCTTGTATGTTGCTTATCGTTCGGCGAAAACATATAAGTCGCTTCAAGGCCTTCACTTCAAACGAAGTTTAGTGGCGGGTAGTTCACTAGGGCGTTGGCAAAGGAAACTTCACGAGAACATCCGCTGGAAGCCCACTGCTTTAGCTGTGGGAGGAAGGCGGGGTTTATATTTTTAGTATATATT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAAAAGACTGACCTCGTTCAGAGGGTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //