Array 1 28711-27522 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QEDR01000012.1 Vibrio cholerae strain BD34 BD34_S34_L001_R1_001contig_12_consensus, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
     28710	    28	 100.0	    33	............................	TGCGACTGGCTACCTGCGCTGCTCACCAAGCAC 	
     28649	    28	 100.0	    33	............................	CTTGTACCACTTGGCTTCAACGACTTCGGGTAA 	
     28588	    28	 100.0	    33	............................	CATGAAGGGCTATGAAGGGATTGACGATTTAGT 	
     28527	    28	 100.0	    33	............................	TCCCCAAAGACTGGATCTGACCTTGCGCCGTAG 	
     28466	    28	 100.0	    33	............................	TGACTTTGGCGAAGTTTTGCAGTGGGTTTTTGA 	
     28405	    28	 100.0	    33	............................	TCCAGCGCAGCATTGGTGAGCATCGAATCTTTG 	
     28344	    28	 100.0	    33	............................	TTTGGTTGTTGATGATGTCTGATGCCATCGCAT 	
     28283	    28	 100.0	    33	............................	TAAAAAATAACTCTTAAATACGTTTGGTGCGCG 	
     28222	    28	 100.0	    33	............................	CAGTCTTATTCATGTTTGTTACGATGATGTTTT 	
     28161	    28	 100.0	    33	............................	TGTTCTCGCCATTCAGTCCTGCTGATTTAGCGA 	
     28100	    28	 100.0	    33	............................	TGATTTATGACAGCTCGCAAAGAGAGTGGGTTT 	
     28039	    28	 100.0	    33	............................	CGACAACGAATGTTGATGCGGTCGTCAAAGATG 	
     27978	    28	 100.0	    33	............................	TCAAAAACCTGAGTTTGCAGAAGTTCTTGGGGC 	
     27917	    28	 100.0	    33	............................	TCAGGATATGCAGATCGGCTCGGATGAATGGCA 	
     27856	    28	 100.0	    34	............................	CGCAAACGAATCGTTGACCTCAATTCAGGCCGTG	
     27794	    28	 100.0	    33	............................	CGCAACCATTGCAGATGGCGCGTCACCTCCCAA 	
     27733	    28	 100.0	    33	............................	CATGAAGTAGATGATTCGATTGCAGTTGATAAC 	
     27672	    28	 100.0	    34	............................	CATGACTGATGCCATTAGTAAGCCTCCGGTAAGT	
     27610	    28	 100.0	    33	............................	CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 	
     27549	    28	  71.4	     0	.................T..AT.ACAGA	|                                 	
==========	======	======	======	============================	==================================	==================
        20	    28	  98.6	    33	GTCTTCCCCACGCAGGTGGGGGTGTTTC	                                  	       

# Left flank :   CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT
# Right flank :  GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGTC

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCAGGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.40,-12.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [8-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//