Array 1 686-2556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUR010000074.1 Anoxybacillus flavithermus strain WS5279 74_9408_27.2264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 686 30 100.0 40 .............................. CATTTCGTTCCGCGTGCATTCTTCTGATAGTAACAAATCG 756 30 100.0 40 .............................. GCCAACTTGGTGATACAATTAAATCTGTTTGGAAAGTCTA 826 30 100.0 37 .............................. TTTGATGCCGTTTAGTGCTTTTGCTTCTGTTCCTCCT 893 30 100.0 38 .............................. TTACTATCGGGTTAGAATGTCCTGCTGCTTTCATTGCT 961 30 100.0 38 .............................. CATGGACAAGCCTGTGGGTCGGAAAGGAAAGCGGAGGG 1029 30 100.0 39 .............................. TTTATTCATCTGTTGCGTCAAATACGGGCGCGATTCTCC 1098 30 100.0 38 .............................. AATATATACATCTGCGATAGTTACAGGATTGTCTTCAT 1166 30 100.0 39 .............................. TATAATTTATTTGTTTAGTCAATAACTCCATATACCCTT 1235 30 100.0 39 .............................. TAAGTGCCATACCCATAGAAGTCGTCAACGCATTCATCA 1304 30 100.0 38 .............................. AAAAAATATCGCTTTCGCTAAAACATCCGTCGCCGTCT 1372 30 100.0 39 .............................. TTCTAATTTCGACATCAAGCAATCGGACGGAACGGTTTT 1441 30 100.0 40 .............................. CCATATAAAGGTGAAGATTGTTCGTATTACGCGATTTTAA 1511 30 100.0 37 .............................. ACAGTTGTTCAAAAATGATGTGGGGGAGATGAGGGAA 1578 30 100.0 38 .............................. TATCGGCTGGTTTCGGATAGCCGGAGCATATGAATTTC 1646 30 100.0 37 .............................. TCGCGACATATATTTGGTAGGAATGAGCCTAATGGGT 1713 30 100.0 39 .............................. CTAAGAGAATAGGCGGGTTTTTCTCGTCGCTTGGTAAGG 1782 30 100.0 38 .............................. TAAATGGTGAACGTCAAAGCAGCGCGTCAAGCGAGCGG 1850 30 100.0 38 .............................. TCCGTTTGGAAAAGTAACAGCTACGGACGTGGTTGAAG 1918 30 100.0 36 .............................. TTTGAATCTGAATGAAATGTATGACAAGCATGGAAA 1984 30 100.0 39 .............................. AAAAGTTGGTTTCTCCGTTTGTAATGTTTTCGGATGCTA 2053 30 100.0 36 .............................. CACTCCTTATGTCTCATTATGTGTCTACCGCGTCAC 2119 30 100.0 36 .............................. ACTCCATCACCATATTCATCAACATATTCGTAAGCA 2185 30 100.0 39 .............................. CAATATTTGCACTCATATTCACCAAACTCGTTTACAGGA 2254 30 100.0 36 .............................. TGCTCATATGGTATTGAGTTTAGAGACAGCTACATT 2320 30 100.0 38 .............................. CTATACAAACACGAATCATCGAAAGTCAAGTAAAGGAA 2388 30 100.0 41 .............................. TATCATCGTTTTATCTCGGTGTCAACAATATTTTATTATAT 2459 30 100.0 37 .............................. ACGACATTTGTTCAACTTTTTCATACCATATTTACAA 2526 30 86.7 0 ......................G...CC.T | T [2551] ========== ====== ====== ====== ============================== ========================================= ================== 28 30 99.5 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GATGTTCGGGTACTCATATCCATCACTCCCCCCTGTACTTTTTTTGTCTCTTTTTTGGTTTGTATCTCCATAAAAGAGGATTTATCTCGTTTTCAAACATGAAAGTGGTGCAGGGAATCATCAAAAAAAGGGATGTATGGATCATATATCCATAGAACTAACACCAAAATCAAAGTTGATTTCCAACCATCACGGATTCAGGATAAGAATTCATGCACATATGTACAAGGTGATTTGAATTTATTTGACGAAGTGTACCATATTTATATTGAATTTGAACGTATCATAAGTAAAGTACTGTAAAATCTACTTATTGTGAATTTATTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGG # Right flank : TTGTGATCAGTTTTATATTTACTTTGTAATGTTTTGTGTTAGGGGTAGTTTCCTTAATTTCCTACTAATCCTTTTTATTTTTTAGAGCGCTGGTCAGCTATCCTCAACCTCTGTTTTTATGTTACTTATTTCAAAGAGTTATATTAATTTAGAAGGAATATATTCCTTTTATGTCGTATTTTATGGTAGGTTAGTTTATTTAGAAACGAGGTGTGATTTTGCTAGCAGAAGCAGTTGTTCGAGTAGGCGAGTCGCTTGTGAGTAGTGATTTACCTTTAACGGAGCGTATTCGTTTGTTAACGGATGTAGATAATGAAGCTTGCAAGAATTTTTTTGAGCACGTCTGGGTTGTGGAATGCATAGAGGAACAAGTGAACGTTCGTTTGATGAGAATAGGAGAAAAGGTGAAGGAAGGTAAAAAAGAAACGTTTGTTGTTGATAGAGCTAAAAACGTTGCCTTTCCTATCATTTATCCTAATGGTGGGAATCCGCTAAATGCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4701-4066 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUR010000046.1 Anoxybacillus flavithermus strain WS5279 46_17533_28.4523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4700 30 100.0 38 .............................. AAAACTTCCGGCAACTCATTAGCCAGTTCCCCAAGCTC 4632 30 100.0 39 .............................. GTGGGATAAATATTTGGGCGACGTTGAAAAAATATCGCT 4563 30 100.0 36 .............................. GTCAACTTGGCGATACAATTAAATCTGCTTGGAAGG 4497 30 100.0 39 .............................. CTCCGTTTGTGAAGCTGGCGGATGCTGTCCAATATTTAG 4428 30 100.0 38 .............................. TGCGCCAGGGCGGACATTATGGCCGGATTACATCGAAA 4360 30 100.0 37 .............................. ATGTACCCCATGTACATAAGTCATAGGCGATGAATTA 4293 30 100.0 36 .............................. CGCTGCAAAAAGTTGTGTCGAAATTGAAACGCGGTC 4227 30 100.0 37 .............................. ACTAGAAATTTCCCTATTCTCTAAAGCAAGCACACAA 4160 30 100.0 35 .............................. ATGAATACGGTCTAACGATGTATTGTGGAAAACAG 4095 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 100.0 37 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TATTGTTTGGCTTTTTTGAAACATATGTGAAATTATCAGACGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGATGGAGTTGATTATTTCGTATGAACAAAAGGCGTTGGAAAAGGGAAGAGAAGAAGGGATAGAACAAGGAATCAAACAAGGAATCAAACAAGGGATGAAGCACCTTGTACAAACGATGGCCAAAAAAGGGATGAGTGTAGAAGATATCGCAAACATCACAGACCTTGCGGAAGATGAAGTGCGTGAGTTGTTAGAAAAGGAATAAGTAATTTGCGCATAATTTCACAACCGTCGTCGACCTCCAATCTTGCAAAAACCCCAGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTTAGACGTATCAACGCATCAAGACGATTGACAGAATTTTCGAATGTATGTATAATGACATTGTATAGCTTTTCCAAGTATTGATTTATCAGCACTTTTTGGG # Right flank : ACCTTTGTAAAAATTCTTCAATTACTTGAGCTTTTTCGTTTGGTTTGTATCGTACCTACAAGAACCAGTATGTTAGGGTCTGGATTTTTTTGTATATACCATTTTACTTTTTCTTTAACATTTGTTATAATATAAGGTAGAGAACATCTTTCTTTCCGATTATGGTAAAGTGAGATGTTTTTTTCGTGGAAATATTGATTTCACAAAGAAATGGAGGGATTTCTGATGAAGAAATACGCCATTGTGTATTGTGAACATCAATTTGGTTCCATGGATGGAAAAACAGCGAATGGGCTTGTGCGCGATTCAGGGCTGTATGAGATCGTTGCAGTCATTGATTCGACAAAAGCTGGTCAAGATGCCGGAGAGGTGCTTGATCAAAAGAAAAATGGCATTCCGATTTGTAAAAACCTTCAAGATGCAATAGCCTCCGCAAAAGAAAAACCGAACTACTTCATCTTAGGAATTGCTCCAGCGAACGCTTTTCTCAAAAAAGAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 62723-61341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUR010000007.1 Anoxybacillus flavithermus strain WS5279 7_65118_22.0687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 62722 30 100.0 37 .............................. GTTAATTGAAAGGGGGTGAAAAATGTGGCTGTCGCTA 62655 30 100.0 38 .............................. TATTCATTTGTGCAAAATATTCTCTTGCCTTTGGTATA 62587 30 100.0 39 .............................. ACTTGATTATAGCGATTAATAAGCAGAAAATAGGGTGAG 62518 30 100.0 35 .............................. TAAAAAAAGAGGACTTAAACGCTTTTAGGGAAGCG 62453 30 100.0 35 .............................. TCTAAAATCTCACTATCTGCTTGTTGCTCGTTCTC 62388 30 100.0 38 .............................. TTTGTAATTGCTTTTTTAGTTGCCATTTTTCATTCCCC 62320 30 100.0 38 .............................. TTTGTAATTGCTTTTTTAGTTGTCATTTTTCATTCCCC 62252 30 100.0 38 .............................. CGCGTATAATATTTATTTCGGACAAGGTGACGGCGCGG 62184 30 100.0 39 .............................. CCTGCTGCGCTCGTAATATCGGCATTAACGAGCATCGCA 62115 30 100.0 39 .............................. TAATATTCATTAGTAACCCTTCCTACATAATATGTGTTA 62046 30 100.0 37 .............................. CTTCCACCGCTTCTTTCATGACTTGCACCGCTTCTTC 61979 30 100.0 40 .............................. CCTGCAAATGTGCATTGCCGCCGTAAAAGTTCGCTGGCCG 61909 30 100.0 38 .............................. TTGTATTCTCATGGGCAGAAAAAGAAAAGATGTTTTTG 61841 30 100.0 37 .............................. AAGTTGATGCAAATGGTCAAATGTATATTGATTTCGA 61774 30 100.0 39 .............................. ATCTGCGCCGCATCCTGTACGGTCATTGTCTCGACCTGC 61705 30 100.0 39 .............................. ATTTTTCTTCTGATGTACGACTCGTCAATTCCCCAACGG 61636 30 100.0 36 .............................. CCCTGTGCGTCGTTTTTCTCATTCTGGGATACTTAC 61570 30 100.0 36 .............................. TTGAGAATCTTTCGGGGCGAATGGAAAACAAGCTGT 61504 30 100.0 36 .............................. AGTATTCATACGCTCTTTCTGGGCTTGTTATTTTGG 61438 30 100.0 38 .............................. TTTCTCAAACGGATAAGCAAATAAATAAAGTGATTCGT 61370 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 100.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : ACGTTGGATGGAAAGAAAAAAACACAGTTTTTTGATCCGGACGACGAAGTGTTTTCACATTTAATAGAACGGAATTTTTATAACAAATATGAAGCATATTACGGTGTTCCACCAAGCGATCGGCTACTCATCGAACCTGTCGATGTTCGAAAATGCGATCGGGTCGTAACGAGCTTTAAAGGCTTTTACATTACAGCGTGGAAAGGGCGGTATAAGCTCATTTCTTCTCCGGAAAATTTAACGTTTTTGTACCGTGTAGGTATCGGTGGACGAAACTCACAAGGATTCGGCATGTTCCGCATCATAAAAGAAAAGTGAAACATTTCACAGCTGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGTGATATCAATAAATACAGAGTATTGACTGAATTTTCGGATGGATATATAATAGAGTTGTATAGCTTTTCCATATGTTGATTTATCAACGCTTTTTTGGG # Right flank : TCGTATTGGTCACTAGTCAGCGCTTCTACAGTAAAAAGTTTGTATAGTACTTAGTTAGTTTGACGTTGGCGGTATTGTGCTTGTCCCTCTTCACTTTCTATATACATCCAAATTGGCATTTTAACCTCTGATTTACGCAGCACACCCGATGCGGCGTAACACCTCATCTGGGTGCTGTAAGACGTGCTGTTCAAAGCGAGTAATGGATTGGGCAATGTCATTTTGATCCTTGTGAAAAACGTTGGCAATCACTTCATCTTTCAACCATTTCCACAGCCATTCAATCGGATTTAACTGTGGAGAATACGGTGGCAAAAAGATGAAATGAAAAGCATCGCCTTCCTCGCCATCAAGAAAGGCTTGCACCATCTTGGCATGATGAATACGCGCATTGTTCAACACAAGCACGAGGAATCGGTCCGTATATTTCTCTTTCAATCGGTGCAAAAAGTCGAGGAACGTTTCGGCATTGGCGGATGATGCGCGATGAAATACCACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12104-10195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUR010000017.1 Anoxybacillus flavithermus strain WS5279 17_42045_23.9812, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12103 37 100.0 34 ..................................... GTATAGCCGAAAAGACTATACGCATGAAATTAAA 12032 37 100.0 37 ..................................... AGCCGTTACAACTGCATTAGCGACAGCACCCACATTT 11958 37 100.0 36 ..................................... TGATTGGTCGGGCATAAAGGTGACTATCCCGCTCAC 11885 37 100.0 33 ..................................... CAACGACGAAGAGGTTGTTTATTCTAATTTTGA 11815 37 100.0 37 ..................................... TTAATTATTATTATAATTATTTTCAAACGAATGTCAA 11741 37 100.0 34 ..................................... CCAGTTTTCAATTGCTTGAGCGCGGGCTATATGG 11670 37 100.0 35 ..................................... CCGTTCGGTAGCCGGGACTACTCTGTTTTGCCTCA 11598 37 100.0 37 ..................................... CAGTTGCTCATCGAAAAAGACCGTCGCATGAATGAGG 11524 37 100.0 35 ..................................... ATATACAAATTTTTGCATTTCTTCTAGTTTATTAT 11452 37 100.0 38 ..................................... TATTTTAACGTCGTAGCCGTCACCAGTTTCTATTAAAT 11377 37 100.0 36 ..................................... TTTAAAGCAATGTTAATTGAAAAGGAAGTTGTTCCG 11304 37 100.0 35 ..................................... TCACCTTCCCTGCAGGCAAATAATTGTAATAAAAT 11232 37 100.0 36 ..................................... AATATTTCGGAATGCATGATGAAACGCCAGATGACG 11159 37 100.0 36 ..................................... TTTGCTCATTTTTTACATGATCATGGATTTCAGAAA 11086 37 100.0 34 ..................................... CAATCTTTAGGGATAGCGCAGATAATAAAGCAAA 11015 37 100.0 34 ..................................... CTTTCTGATTTTATTGTACATCATCGCGCGCTTA 10944 37 100.0 37 ..................................... ATAATAAATTTCCTCCTTTTACTCCTTGAATATTTTC 10870 37 100.0 36 ..................................... AGTATCATCGCATTGTCTTTTATTAGTTGCTCTATT 10797 37 100.0 34 ..................................... TACAAATGTTTTCGCTCCTTGTTTGATCGCCTCC 10726 37 100.0 26 ..................................... TGCTCTTGCTGAGTTGCTCGCGACTG Deletion [10664] 10663 37 100.0 36 ..................................... AATATTTCGGAATGCATGATGAAACGCCAGATGACG 10590 37 100.0 34 ..................................... TTTTATAAGCGCACCTTTTAATAAATTTTTAGCA 10519 37 100.0 34 ..................................... AAGAAATCATTTTTAATAAAGCACACATAGCATA 10448 37 100.0 37 ..................................... AAATATCACAATGGTAAATGGCTTATATCACTTAAAG 10374 37 100.0 35 ..................................... GTTGATAAAGTCGTGGATTTCAAGTTTATTGATCA 10302 37 100.0 34 ..................................... ATAACAAGCCGAGCGCAGCCGATGATATCAAAAT 10231 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 35 GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Left flank : TGACATATGATGTTGAGACATTGGAGTCAGATGGTCAAAAACGATTACGAAAAGTAGCAACTATTTGTCAAAATTTTGGACAACGTGTGCAAAAATCTGTTTTCGAGTGTAATGTCAGCCAAGCGCAGTTGGAAGAAATGGAACATCAATTGTTGAAAGTTATTGATCTAGAAAAAGATAGCTTACGAATATATACGTTATATGGTCAACGATCCAAAGCAGTTCGCTCCTATGGAAAGGACCATTACATTGATTATAATGATCCGATTATTTTGTAAGAGTAGAACATATACAATATGTGTAGCAGTTATGAATTTTGGTGCGCGAACATAAAGCAATAGTAAACAATCAGGAGGATCGCGATGAGTAAAAAAGGCTTAGTAAAGCGAAGATCCAAAAATTCATCAGAGACTATCTTTAGCCACAATGCACACCAGACAAAACAGTTCGCGTTTTTATACTTTTACACTTGCTTCACGCATAGGATTGAAGCGTAGGCA # Right flank : TGCAGAAGGAAGTATTGCGTAATAACGTATGTGCTGAAACTGTCGTGCGCATGACGATGTTGATCGTGGAACAATTATCAAATAAGTACATGCAACTGTATAAACATAAACAATATGATCCCATTCGGCAAGGGGATTTGCTTGTACGGGAGTTAGAGGAATATGTGAATATTATAAAATATGGAATTTACAAGTAAAGGCGGGGCTTTTCCCGCCTCATTTATTTGTAAGAAAATTATTGAAATTTTCTGTTTTTATATGATATGATATTCTCAAGGAATTTGAAACTATGTTTCGTAATACGCAACAAAAAAGAAAGGGGAATAATGATGGGGGAATATGTACAAGTTGGACGTTTGCAAGTCGCTAAGTTGTTTTATGAATTTATCGTTGAAGAAGTATTGCCAAATAGCCAAGTAGATAAAGATAAATTTTGGAAAAACTTTGAGCAACTCATTAATGAGTTAACACCAAAAAATAAAGCGTTGCTTGCCAAACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCATAAAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 28607-29238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUR010000022.1 Anoxybacillus flavithermus strain WS5279 22_35338_21.5484, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 28607 30 100.0 35 .............................. TGAGCTTGTCCACTTTCGCTTCAATCGCACGACGA 28672 30 100.0 36 .............................. TATGATAGTTACGCTAAGATAGAACGCTTGAAGCGT 28738 30 100.0 35 .............................. TATAAATTGTTTTCTTTTAAAAATTTATCAATAAC 28803 30 100.0 39 .............................. TTCAAGAACCAATCACCCCTTCACACATATGACATATCC 28872 30 100.0 39 .............................. TACCTTTTTGCTGACGAAAGACAGCAGGAACTCACACAG 28941 30 100.0 36 .............................. GTGATTGAACCGTCTTGGATTTTTGCACTTGTAATG 29007 30 100.0 37 .............................. AGCGATAAAGTGTTTCCATATGATGACCTGCCATCGG 29074 30 100.0 39 .............................. TCGGCATAGAACGTGCTTTCTTCCCCTTGAGGCTCTGGC 29143 30 100.0 36 .............................. TTGTTCGGTGTCATAGAGTATAGTTTTCCATCATAT 29209 30 83.3 0 G........................TCTC. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.3 37 ATTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TATTGTTTGGCTTTTTTGAAACATATGTGAAATTATCAGACGAAGAAGAACGAAGACTGCGAAGCGAGGTGAATGAAATGGAGACGAAAGAAAAAGAACAAGTGATGGAGTTGATTATTTCGTATGAACAAAAGGCGTTGGAAAAGGGAAGAGAAGAAGGGATAGAACAAGGAATCAAACAAGGAATCAAACAAGGGATGAAGCACCTTGTACAAACGATGGCCAAAAAAGGGATGAGTGTAGAAGATATCGCAAACATCACAGACCTTGCGGAAGATGAAGTGCGTGAGTTGTTAGAAAAGGAATAAGTAATTTGCGCATAATTTCACAACCGTCGTCGACCTCCAATCTTGCAAAAACCCCAGGGGATCGACGACAATTTGTTTTTTGCAACTTTTTTAGACGTATCAACGCATCAAGACGATTGACAGAATTTTCGAATGTATGTATAATGACATTGTATAGCTTTTCCAAGTATTGATTTATCAGCACTTTTTGGG # Right flank : CCTCCCTTCAAACGGTGCCAGGCACTGTTCGTAAAGATTCTGCCCGTAGTTGCAATCTTTCTTTTTCTCCTGTAAATACACGAAAGTAGGTGGCATATAAAAATGGAAATGAGTAAGTTTATACTTCATGGCGATATATTGATTATGAAAGTAAAGATTGATGGTGTTGATTATACATTTAGCATTAGGTGGAAAGCACCGAAGAAACCTTATGATGAAACTTGGGAACTTGTATCATATGCGAAAAATTCGACTGGTGAAAAAGATTTAAGTGAAGAACAAATTAGGACGTTTATGGATACAGTTAATCCTAAAATGAATTGGAATATAGCAGATTTTCAAAAGTAAACTTCTTGAACTAACGGGTGTTTAGTTTAGTAAAAGATAAAAAGAATATACATATTATACATGACTAATATGTACGTTCCTTTATTTTTTAAGGCTTTTTATAATTTAAGTCTTGATAAGCAATGGGTTCTTTTTTATTTGCTAAATTATCA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13169-14419 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJUR010000030.1 Anoxybacillus flavithermus strain WS5279 30_28276_29.5968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13169 30 100.0 39 .............................. AAAAAATGGGGGGTATATAATGTTCCAACTGGAAAATGA 13238 30 100.0 37 .............................. TTTTGGTGACGCTTCGTCTCGTATGCAAGTAAGGATG 13305 30 100.0 40 .............................. AATAACATAAATGAAAGTCAATACGAGGCTTTTCTCAACG 13375 30 100.0 39 .............................. AAGAACTTTAATTCTCCGCTCGGAGTCTTGCCGTAATTT 13444 30 100.0 37 .............................. AAAAATGGGGGGTATATTATGTTCCGACTGGAAAACG 13511 30 100.0 39 .............................. TTTCGGTGACGCTTCGTCTCGCGCTCAAATACGCATGTA 13580 30 100.0 38 .............................. TCAATCTCTTTTAAAATGAGCTGTCAACGGTTGACAAC 13648 30 100.0 38 .............................. CTGCCAATGGATGTGAAATATCATCATAATATTGCTTG 13716 30 100.0 40 .............................. TGTGATCTCCAAAAGTTCAGTAAGTGCGTTCAAATGCTTC 13786 30 100.0 36 .............................. ATGAAGAAAAATGTTGATTTCAGCGATATTTTCTAG 13852 30 100.0 40 .............................. CGTCGCGTGGCGTTCGCACTAGGGTTCATTCTTTTGAATA 13922 30 100.0 38 .............................. GAAAAACAATAAAATCGGTCGATATAGCTTTCGATTTG 13990 30 100.0 38 .............................. TGATAAATGTTAGGCTGTTTTTATCTCCTTTCGTCGAA 14058 30 100.0 37 .............................. TATGCTGAAACGATCGGCAACGAGGAAAAAAAGATAG 14125 30 100.0 36 .............................. ATTGCTTCGTTTTTATCTACAAATATGTGGGCAGAA 14191 30 100.0 39 .............................. TAATTAAGGAGGTGCACTTACGTTAAGAAAAAGTTTCTT 14260 30 100.0 36 .............................. TCCGTTGCCCAACTTTCTGAACCATCACTTTTTACG 14326 30 93.3 34 ..C..........................T AATGGAATCACAATGTTGCCTCCTGCTAGATAAA 14390 30 80.0 0 A.......................A.CGTT | ========== ====== ====== ====== ============================== ======================================== ================== 19 30 98.6 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : GAAGCGATCGATGCAACAAAGCGCCCGCTCGTAATCGGAGGTGTATTCGTACTTATGCTTGCATCGATCATTTTCTCTCACCGCGCCAACACATATTTGCGCAAATTAGACAATGAACAGTAAATTCCCCTGTTTTCGTACAAAGAAAAAACATGTAAAATAAAAGAAAATGGGTAAAGGGGGAATAAACGATGATGTGGATGATTACAGGTCTAGTCATTACAGCTGTCATCGGTTTTGTTATTATCGCGGAAGTGAACGCCGAAGCATAAAACAGTCTCTAAACAGGAGACTGTTTTTAATAAAATTTATTTGTGATAAACTTCACAACTGTCGTCGACCTCCAATCGTGCAAAAACTTCGGGGGATCGACGACAGTTTATTTTATGCGAATTTTTTAGCTGTATCAACGGACATAGACTATTGACTGAATTTTCAAATGTATGTATAATGATGTTGTATAGCTTTTCCATGTGTTGATATATCAACGCTTTTTTGGG # Right flank : TTTTTGTATTGAAAAGCAGGGATGTTTATGCCCTGCTTTTATTTTTTTGTTACAACTTTCAGAAAAGTATTGCGCAAAAACTAGTTCGTTTGTATCATCAGTAATATGAGGATATTTTTTGAAAAGGTGGATAAGGGATGAAACTACTAACATTTCTCGGCGCGAATGACTATCGTGAAACAACGTATCGTTTTCGGGAGCGTGTGCATACGGCAAAGTTTTTTCTATCTGTCCTTATTCAAGAACTGCAACCAGGTGAAATATACGTATTTATGACAGATGGGGCACGAGAGAAAAACGAAGCACCGTTGCTTGACGAATTAAACCGATACGGCGTAGATGAAAAGAAAGTGCATGCTGTATGCATTCCCGATGGGCAAACAGAAGAAGATTTATGGAATATTTTTTCTGTTATTGCTGATCATGTGTATGAACATGATGAAATCGTCCTTGATATTACGCACGGATTTCGGACGTTGCCGCTCGTTGGAACAATTAGT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //