Array 1 51-994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000069.1 Erwinia amylovora strain 1612 Ea_1612_contig_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 112 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 173 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 234 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 295 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 356 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 417 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 478 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 539 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 600 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 661 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 722 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 783 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 844 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 905 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 966 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GTATGCGGGGATAAACCGGCGGCGAAGAGACCGGAGCATGGGCTGTTGAAG # Right flank : GTTTCGGCGAGCGCGTATATGGTCACGTTCACGTGTTCCCCGCGTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3078-2379 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000072.1 Erwinia amylovora strain 1612 Ea_1612_contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3077 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 3016 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 2955 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 2894 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 2833 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 2772 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 2711 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 2650 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 2589 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 2528 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 2467 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 2406 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGGTGTTAAGCGTACCCTGCTGACGGCATTTTA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000122.1 Erwinia amylovora strain 1612 Ea_1612_contig_122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 62 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 123 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : | # Right flank : TTCCCGCGTTTCGTGGGATACCCCTTTTATGCGTGTTCCCCGCGTGAGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 845-511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000100.1 Erwinia amylovora strain 1612 Ea_1612_contig_100, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 844 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 783 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 722 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 661 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 600 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 539 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GAGCGGGGATAAACCGCCGCGAAAATCCGCAGTGAGCTGGCAATGAG # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000020.1 Erwinia amylovora strain 1612 Ea_1612_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 111 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 172 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 233 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TATGCGGGGATAAACCGCCATTTTATGACAGTCTGGCGCAAAAACTGGAG # Right flank : ATTATAAGGATCACTTGCTAGGGCATTATATAGTGTTCCCCGCGTATGCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000102.1 Erwinia amylovora strain 1612 Ea_1612_contig_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 62 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 124 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 185 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 246 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 307 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : CCCTTCTGGTGTTTTGATTCTCCTAGGTGATTGTGTTCCCCGCGTATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000019.1 Erwinia amylovora strain 1612 Ea_1612_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29874-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000019.1 Erwinia amylovora strain 1612 Ea_1612_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29873 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29812 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29751 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29689 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29628 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29567 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29506 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29445 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.8 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GTATGCGGGGATAAACCGGATGGTCGTACCGATGTTTGCGAAAGATTCG # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4903-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXP010000005.1 Erwinia amylovora strain 1612 Ea_1612_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4902 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 4841 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 4780 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 4719 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 4658 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 4597 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 4536 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 4475 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 4414 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 4353 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 4292 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 4231 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 4170 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 4109 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 4048 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 3987 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 3926 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 3865 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 3804 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 3743 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 3682 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 3621 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 3560 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 3499 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 3438 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 3377 29 93.1 32 ..........NN................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT CGAGTGC [3361] 3309 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 3248 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 3187 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 3126 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 3065 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 3004 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 2943 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 2882 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 2821 29 100.0 30 ............................. ACAAAAGACAACACCCCCTTACCCCGCCAG 2762 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 2701 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 2640 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 2579 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2518 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2457 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 2396 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 2335 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 2274 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 2213 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 2152 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 2091 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 2030 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 1969 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 1908 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 1847 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 1786 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 1725 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 1664 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 1603 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 1542 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1481 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1420 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1359 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1298 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1237 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1176 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 1115 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 1054 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 993 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 932 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 871 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 810 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 749 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 688 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 627 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 566 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 505 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 444 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 383 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 322 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 261 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 200 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 139 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 80 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GATATAAAATGAATGAATGGATCAGGGCCTATGGTGTTCCCCGCGTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //