Array 1 225952-227567 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLR01000035.1 Escherichia coli strain MOD1-EC6611 MOD1-EC6611_35_length_244265_cov_147.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 225952 29 100.0 32 ............................. CTCGGGCAGGGCCGCCGCGTTACCTGGTCTGT 226013 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 226074 29 100.0 32 ............................. AAAATAAATGATAATCAGATGGTTAGCAACGT 226135 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 226196 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 226257 29 100.0 32 ............................. TATTCGTAGGGTTTGCGCCGGAAATAGGCGCT 226318 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCGGCCTGTC 226379 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 226440 29 100.0 32 ............................. CATTTTTGCGTGACGAGCTGCGCCGCGTTCTG 226501 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 226562 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 226623 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 226684 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 226745 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 226806 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 226867 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 226928 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 226989 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 227050 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 227111 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 227173 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 227234 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 227295 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 227356 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 227417 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 227478 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 227539 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 135106-134345 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMLR01000023.1 Escherichia coli strain MOD1-EC6611 MOD1-EC6611_23_length_144081_cov_146.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 135105 29 100.0 32 ............................. CCAAAGCAAAAGAAGTCGTCGATAATATGCGT 135044 29 100.0 32 ............................. CCCGCTCATATTCATTGTCAAGTTAACAGCGC 134983 29 100.0 32 ............................. TGTTTTCCTGCAATAAAACGACGCTCGTTACG 134922 29 100.0 32 ............................. CTTTCCATGTACTCATCCTTACGATATCCAAC 134861 29 100.0 32 ............................. GGCGGGCCACGCTCCATGAGTTAAGGACTGTC 134800 29 100.0 32 ............................. CGAGCGCAACACGGCCATATTATTACCCCATT 134739 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 134678 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 134617 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 134556 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 134495 29 100.0 32 ............................. ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 134434 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 134373 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.1 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //