Array 1 8680-7370 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWKJ01000134.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8679 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8618 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8557 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8496 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8435 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8374 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8313 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8252 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8191 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8130 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 8069 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 8008 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7947 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7885 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7824 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7763 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7702 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7641 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7580 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7519 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7458 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7397 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87-2051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWKJ01000003.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM218, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 148 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 209 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 270 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 331 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 392 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 453 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 515 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 576 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 637 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 698 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 759 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 820 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 881 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 942 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1003 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1064 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1125 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1186 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1247 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1308 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1370 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 1431 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [1473] 1473 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1534 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1595 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1656 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1717 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1778 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1839 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1900 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1961 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2022 29 96.6 0 A............................ | A [2048] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //