Array 1 105862-106927 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOBS01000009.1 Escherichia coli strain MOD1-EC5822 MOD1-EC5822_9_length_173614_cov_43.3031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105862 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 105923 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 105984 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 106045 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 106106 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 106167 29 100.0 32 ............................. CGCAACATCGCCAGATTTGTCGTAGGAAAGCA 106228 29 100.0 32 ............................. CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG 106289 29 100.0 32 ............................. CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA 106350 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 106411 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 106472 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 106533 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 106594 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 106655 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 106716 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 106777 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 106838 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 106899 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132630-134183 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOBS01000009.1 Escherichia coli strain MOD1-EC5822 MOD1-EC5822_9_length_173614_cov_43.3031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132630 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 132691 29 100.0 32 ............................. TTGGCAACGCAACTAAAGACAAAAATGGCGAG 132752 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 132813 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 132874 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 132935 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 132996 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 133057 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 133118 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 133179 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 133240 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 133301 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 133362 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 133423 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 133484 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 133545 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 133606 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 133667 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 133728 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 133789 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 133850 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 133911 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 133972 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 134033 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 134094 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 134155 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //