Array 1 2000401-2001343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEJ010000001.1 Ralstonia solanacearum strain CCRMRs287 CCRMRs287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2000401 29 100.0 32 ............................. CGCGCCGAGCGTCCGTTCCGCCCGTGGCAACA 2000462 29 100.0 32 ............................. CTCGGCGCGCTTGATGGTGCGGCGTCGCGGGA 2000523 29 100.0 32 ............................. GCCAGACCCCACATCGCGAGAATCCCAGCCCC 2000584 29 100.0 32 ............................. AAATATCTGAAGCAACTGGGCCTGGGTGCTGC 2000645 29 100.0 32 ............................. ACGATGCGGCCGGGCATGGTTCATCGAATGAC 2000706 29 100.0 32 ............................. GTCGGCAAGCTGCCGTTCGGCGAGGACATGTT 2000767 29 100.0 32 ............................. AGATCAAACTGTGCCATGCCCTGGGAGGTTTG 2000828 29 100.0 33 ............................. CCAACAACGAACTGGCTACTGCCATTCGTCGGC 2000890 29 100.0 32 ............................. CTCGCTTTGAACATGTGGGAGAGCGAACGCAG 2000951 29 100.0 32 ............................. GCTTCATATTCATCGGCGGGGTGCATGTCTTC 2001012 29 96.6 32 ........T.................... GCGCTGGCGAAGGGTCAGTCGCAGCCGGTCAC 2001073 29 96.6 32 ............C................ CGCCTGAAGCACGGCGGCAATGCGGTGCTGCG 2001134 29 96.6 32 ......T...................... ACGGGTTGGGCACCGCTGTATGAACACTGGCT 2001195 29 93.1 32 .............A..T............ GGTGCGGGCGAGTTCGCGCTGCCGGGCCTGTC 2001256 29 79.3 30 ..A........TCA..........TG... CTGCGCCAACAGCTTACCGTTGATCGTGCC 2001315 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================= ================== 16 29 96.1 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACAGGACGATCGTGCAGTACCTGCAGTTCGCGCGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGATAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGAGCCGTTTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : TTCAGCCAGCCCCATTTCCTCGATCGTTTGCAGGAAGATGAAGAACGTTCATGGACTAACGCCTTTGCTATCTCATTTGGATCATTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGAGCGAGAAAAGATAGAAATTTCCTGACATCAAGAAAAGGCATCAGGCTGATATGGAAAAAGGGGCGGCGCGATACTTTGCTTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCATTGGATGTCGCCGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGATTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGACCGATCTCGTCTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2010269-2011091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEJ010000001.1 Ralstonia solanacearum strain CCRMRs287 CCRMRs287, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2010269 29 100.0 32 ............................. CCGGTGAACAGCGGTACGCCGCCGATACGCAG 2010330 29 100.0 32 ............................. ACTCATCGCCTCCCCAGGCTTCGCGTTGTGCA 2010391 29 100.0 32 ............................. TACGGCGTGGGCGTCTGGCAGCAGCAGAACGC 2010452 29 100.0 33 ............................. TTCTACCTACTGTTCGTCTTGCCGGTTGTCGTC 2010514 29 100.0 32 ............................. CTGGACGGGTTCATCCAATTTTTCCGGCAGCA 2010575 29 100.0 32 ............................. GTCGGCGTCTAAGCCCCTGCCGCGCAAGGCGT 2010636 29 100.0 32 ............................. ACACTGCGCCAGCACCGCCCCCCGATTCCACC 2010697 29 100.0 32 ............................. CCCTGCCTCAACATCTTCAGCGCTGTAGTACT 2010758 29 100.0 32 ............................. GCTGTGCTGCTCGCGGCCTAGCAACTCCGGTC 2010819 29 96.6 32 .................A........... CGAGCGAGGTGGGCCTTGTTGACCTGGCCGAG 2010880 29 86.2 32 ............TT....A.......T.. GTTCAGGAGTCGAGCGACTTCCTGTCCCGCAT 2010941 29 96.6 32 ............T................ ATGAGCGGGTTACCCGTCGCGGCGGCTTTTAT 2011002 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 2011063 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.6 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTCTCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGAGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTATTGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTGTACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAATCGCCGGTTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGTGGAATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCAGGGTTGGATCAGTCCGCCAGCGCTGCGCGCGCAGCCGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACATCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATTTCGCGCAGCTGCGCTACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCCCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //