Array 1 244652-245777 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVJ01000001.1 Salmonella enterica subsp. enterica serovar Colindale strain BCW_2908 NODE_1_length_371335_cov_3.20822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 244652 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 244713 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 244774 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 244835 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 244896 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 244957 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 245018 29 100.0 32 ............................. TCCGGCAAAAATCCAGACCGACGGCGCAATGG 245079 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 245140 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 245201 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 245262 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 245323 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 245384 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 245445 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 245506 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 245567 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 245628 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 245689 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 245750 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 262047-265066 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVJ01000001.1 Salmonella enterica subsp. enterica serovar Colindale strain BCW_2908 NODE_1_length_371335_cov_3.20822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 262047 29 100.0 32 ............................. ATTGCAGTCAAAGTCGGCATCGTGTCACCGCC 262108 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 262169 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 262230 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 262291 29 100.0 32 ............................. CCTCAGACGCTGGCATGGTTCCGTATGCCGTA 262352 29 100.0 32 ............................. CCGCGCAACGAGTGTTTTGCGAAACCGGCAAA 262413 29 100.0 32 ............................. GAATACAAATTCGTTGCCATCATCGCTTGCCG 262474 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 262535 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 262596 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 262657 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 262718 29 100.0 32 ............................. CGCCATATCAGCGTGGCGCGCTCTCCCGTTTA 262779 29 100.0 32 ............................. GGATCGCGATTTTGCCGATTACCGGGACGCTG 262840 29 100.0 32 ............................. AGCTGGCGGATCTGTTCGTCACTCAGGCGGGT 262901 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 262962 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 263023 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 263084 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 263145 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 263206 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 263267 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 263328 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 263389 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 263450 29 100.0 32 ............................. GCCGACATGCTTGGAGAAATAAGCGAAGGGCT 263511 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 263572 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 263633 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 263694 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 263755 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 263816 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 263877 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 263938 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 263999 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 264060 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 264121 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 264182 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 264243 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 264305 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 264366 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 264427 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 264488 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 264549 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 264610 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 264671 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 264732 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 264793 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 264854 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 264915 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 264976 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 265037 29 93.1 0 A...........T................ | A [265063] ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //