Array 1 1148037-1149079 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTJ01000001.1 Prevotella buccae strain NCTC13063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 1148037 49 95.9 28 ...............................................CT GAAGTGTCTCATTCACGTCTTCGAGGGC 1148114 49 95.9 27 ...............................................AT GCGGACGGTGAAGTCTGAGTTTGTCGT 1148190 49 98.0 27 ................................................T TCAAATATTATTATTATTTTCGTACTG 1148266 49 100.0 27 ................................................. TATCGTGCCGTTTGCAACAATCATATT 1148342 49 98.0 28 ................................................A ACCTAAAGATTTGGCTACATCCTTGCCA 1148419 49 95.9 27 ..........................T.....................A CGGGCATAATTAGATTTACGAGGATAA 1148495 49 100.0 27 ................................................. GTATTACCCATGGAATCCTTGAAAGCG 1148571 49 98.0 28 ...............................................C. AGAACGTGAAGTTTGAACTCAATGTATA 1148648 49 95.9 28 ...............................................AA GTGGTCGAGGGACTGGTGTTCCAAATTT 1148725 49 95.9 28 ...............................................CC AGTTTCCAAGCATTCGACCCGGTTTCCA 1148802 49 95.9 28 ...............................................AA ATTGGCTGCCACATTGGCCCAACAAGCT 1148879 49 98.0 27 ...............................................G. CAAACCTGTGAGTAGATACGAATTTAT 1148955 49 98.0 27 ................................................T ACAAAGGTACGAAATATATTTGAATTA 1149031 49 98.0 0 ................................................C | ========== ====== ====== ====== ================================================= ============================ ================== 14 49 97.4 28 GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACTG # Left flank : ACAACGTGAGTATCGAGCCCTACGGTGGTGGCTATCTGGCCTGCGGCGTAGGCGGTAAAATCAAGGACTACGGCAAGCGTGCGGCCTTCAGCAGCTTTGAAGACGGCTACTTCAACCGCTTCGACGGCGGTCTGAAAATAGGTTGCGACGTGAGTTTCCAGATGCTCACCATAGGCATTGGCTACGACATAGGCCTCGCCAATGTGGGCCAAGATGTTTTCGACGACACTCGCACGGGCTGCTTCAACCTCAATGTGGGTGTGACATTCTAAGCGGCTATAGGTGCTGCTGCTTCATTCATATAGCCACGCCCCTTCCCACACAAACGACTCACCCACCGACACAACATAGAAAGGTGACTGTACCGAAGTTCAATACATCGGTACAGCCACCATCCTTTTGCTTAAAATATGAATGCGAAGATTTGGATTTATGGAATTATTCGTATATTTTTGAGCCAACAACAACTCAACACTCATATCACTCACCTTTTAGTAACT # Right flank : CGATATCTATAATTCACTGAATTACAAATAGATACTTTGTTATTGCAAGAAAAATAAAATGACACCGCAAAGCAAAATCCCATTCGCAACGAATGGGATTTTCGCTTTCTATACAATACGTTCAGAATAGTTCCAGCTGTTGGAAAGGAGCATTAGGAAGAGTAGGCCTTTCCCCATAAAATAACTGTATGTTGGCAAATTGCTTGTCTGTAATACACAAAATTCCGACCTTTCCAAACTTCGGAAGATTATTGCGGATACGCTTGATATGCACTTCAGCATTCTCCATACTAGCGCAATGGCGCACGTAAATAGAAAACTGGAACATCGTGAATCCATCTTTAATCAGCACCTTACGGAAATCGATATAGGCCTTTTTCTCTTTCTTTGTATCCGTAGGCAAGTCAAAGAATACAAGAATCCACATAATTCTATATTCACTAAATCTGTCAAAACCAGACATAACAGGTTACATTTCGGGATAGCTAATATGCCGCACC # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:-0.5, 7:-0.05, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2586471-2585777 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTJ01000001.1 Prevotella buccae strain NCTC13063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2586470 36 100.0 29 .................................... AATTATGAGATGATGGAGGTGCATCAACA 2586405 36 100.0 30 .................................... AACTGCTGATTATCATCGGAATGGTTGCCG 2586339 36 100.0 30 .................................... GAAAAATGTGGATTTAAAGTATTGCTCAAC 2586273 36 100.0 30 .................................... TGGGTGTAGGGCAGACAACTTTGGTGTTGC 2586207 36 100.0 29 .................................... TATTTTATGTGGTGTTTTCAATTGTTATT 2586142 36 100.0 30 .................................... CAATCATTTCGCAAACCCATTCGGAAACGT 2586076 36 100.0 30 .................................... CGACGGATGTTATCTTTATCCGGTCTGCCT 2586010 36 100.0 30 .................................... TAATCTTACCAAATGGTTTCTTTTGGACTG 2585944 36 100.0 30 .................................... ATAGTGATCGGATGGGCCAAGAATCTCGGC 2585878 36 100.0 30 .................................... TAAGTCTGAAGAATGGAATACCATGCGTAA 2585812 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Left flank : GAGAATATTGAATATGCCAAATACCAAGCTGTGTTACAAGCACATAAAAGCCTGTATAGACTACTCAGATTTACTACAAATACTGAAAATGAAGACAGCATATTGATTTGGGAAAAAACAAAAGATGGTAAGCAAGAAGCAACCTATTATTTTAGAAAAGAAAACATACGCAAATTTATGAAAGAACTCTCTGAAGAAATATATAATGAGGGATGCGGCATTTTTATGTCAAAAGAGGTTCTATCCCTAATTTCCGAATATAGAAATATTGTTTATGGTTTCATGCTTTCCGCCCAAAACAATCCCCAAGAAACAATAAGAATAACTAATAGAGAGTCTGTAGAACGAATGAAAAAGATTCACCAAAACCTCTCGATAGAAATCAGACAAGCAATCAATCTGAAAAAACGAGATTTAAGATTTTAATAAATAAAAAGTGAGGAAGTATAACCTAAAAAATAAAGAAAATAGATTGGAAATGAGTCGTTTACTAAATATCT # Right flank : TGCTATTTTATGAATGAAGATTATTACCTTAAAACATAATATTTCGTCATCTCAAATTGAAACATGAGACAGTTATCATCAAATATTAAAGCAAATAATTTTTAAGAAGGATACAAAGTATATAACAAATATAAAAAAGAATTTGGGGCTTGTATGGAAATTCTGTAAGAATCAAAAACTTATATAAAATACGCGATGGGATAAAACGTGATCAAACATACTCATCTTAAATGAAAAGAAAAATGAAAAATATCTTCTCAAACAAGTCTTTGTTCCCTAAAAAAGACACAGCAAAAGATTCCAAGAGAACCTTTTGCAAGATAAACAAACCATCTTGCAGATTCTACAAGCCATAACAAAGGGACCTACACAATTAGGCTATGAAAAAAGGGAAGCACACATGCACTCCCCTTGCCAACAAAAAATTACAAAATAAATGGACAGGACGTAAAGCGACATGAAATAAGTCGACTACTCTGACATACCATCATCAAATTGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //