Array 1 430159-431650 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLRT01000001.1 Salmonella enterica strain CFSAN044883 CFSAN044883_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 430159 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 430220 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 430281 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 430342 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 430403 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 430464 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 430525 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 430586 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 430647 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 430708 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 430769 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 430830 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 430891 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 430952 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 431013 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 431074 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 431135 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 431196 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 431257 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 431318 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 431379 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 431440 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 431501 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 431562 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 431623 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447907-449402 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLRT01000001.1 Salmonella enterica strain CFSAN044883 CFSAN044883_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 447907 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 447968 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 448029 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 448090 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 448151 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 448212 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 448273 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 448334 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 448395 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 448456 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 448517 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 448578 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 448639 29 100.0 33 ............................. GGCCTAGATGATCCGTTGGCGTGGAACGTTAGC 448701 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 448762 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 448823 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 448884 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 448945 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 449006 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 449067 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 449129 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 449190 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 449251 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 449312 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 449373 29 100.0 0 ............................. | A [449400] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //