Array 1 384408-382759 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCGK01000024.1 Aliivibrio fischeri strain ZF25 ZF25_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 384407 28 100.0 32 ............................ ACAAGGTAACAATAATTCCTTATCAATATATG 384347 28 100.0 32 ............................ ACTAGGACGGTTTTATAGATAGTAAACACCTT 384287 28 100.0 32 ............................ CGACTTATGAAATTATTTAAGAACGAAGATTT 384227 28 100.0 32 ............................ ATATTCAGAGTTCACCACGAAGTCTTGAACCT 384167 28 100.0 32 ............................ AGTCAATGTGGTCAGATGTTGGGCGCGGTATT 384107 28 100.0 32 ............................ ACTGTGACGATACGGTAAGCAAAGGCGACACA 384047 28 100.0 32 ............................ AATCACTATTATTGGTGAGGCTTTCTGCGATA 383987 28 100.0 33 ............................ TAACCATTATCTTTTGGTTAGGGCTTTTTTTTA 383926 28 100.0 32 ............................ AAATGACGATGGAAAAAGAGGGATTACTTTTT 383866 28 100.0 32 ............................ GCAAGGCAATAACAATTCCTTATCAATATATG 383806 28 100.0 32 ............................ TTTTTTCATTTCCTCCAAATCCGCTTCAGCTT 383746 28 100.0 32 ............................ GCTTGTTCGGCTGGCATTTCGCTAAATGCTGA 383686 28 100.0 32 ............................ ATTGTTGATTTTCCGCTCACGCGCTGCGGTTG 383626 28 100.0 32 ............................ ACTATTGCCGCGCTCGTCGTAGTTGTCCAAGT 383566 28 100.0 32 ............................ CAAACTCTGCGGTGTAATCCTCAAAGTAAGCT 383506 28 100.0 32 ............................ TACTTCAAAGGCTGAAAGAAAGAAAGCTCTTT 383446 28 100.0 32 ............................ GCTAGGCATCTGTCCTGTACTGTTTAACGACT 383386 28 100.0 32 ............................ TACGAAACACTTGTTTAGTACATCGTTTAATT 383326 28 100.0 32 ............................ TGGATTGATTCGTGCGCTGCCTGGTCAAAGTT 383266 28 100.0 32 ............................ TGAAATCAGGGTTAGTAACACCAAAATGTGCT 383206 28 100.0 32 ............................ AAAGTTCAATGGATCTTGAGTGATGTTAGATT 383146 28 100.0 32 ............................ TAAAAACTCAGCGATACCCTTGACGGCCTCGG 383086 28 100.0 32 ............................ TTTGGCTACATAATTCTTTTTGTTAGCGCCAT 383026 28 100.0 32 ............................ TGTATGCGCCCTGATAGGCCCAGATTTATATA 382966 28 100.0 32 ............................ AAGAGCTAGTTCGTACATATGGTCAGAGTCTA 382906 28 100.0 32 ............................ AGTATAAGAAAACATAATTAAATTTAATGCGT 382846 28 100.0 32 ............................ CGACAAGGAGGCGATCTGGCTATTAGAGCTTG 382786 28 75.0 0 ..........AT........A..TT.CT | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCATGATTTGAATGGTGTAAGCTGGTTAGGTGGGCTTATTGGCTATTGTAACGTTAGTGAAATTACAGTGGTACCTAGTTCGTGTGAATATCGTATTATTTCACGAATTCAAAGCACCATGTCGCAATCTAAGCTTAAACGATTAATAAAACGTGGTTCAATCAGTGAAGAAGAGGAGAAAACTTATAAAGCTAAAATGTTTAGCAAAGGGCTCGATAATCCCTACTTAGAATTAGAAAGCAGTTCTAATGGATATAAGCATAGACGTTATTTACGATTTAGTGCGCCACAAAGTGAGCCGATACAAGGTAAGTTTGATCAGTTTGGTTTGAGTAAGTCAGCTACAGTCCCTTGGTTTTAACCAAAAATAACCTAAAAATTGCTCTTTAAAAACGAGTCAATAAAATCAGTAAGTTACAACAAGTGTTAAAAATTAGGTAAAAATGGGTATTTTTGCTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTCTT # Right flank : TGCTAGGTTTTATAAATTGCTATTAGTTGAGGAATTATTGTTTGAGAAGAGAAAGTTTCTTGAATGGTGTGTTGTGCATTTTTCTGAATATTTTTAGCTTGAGATGACGGTAAGTTTACCCAATTTTTTATTGCTGTAGGTAGAGCATCAGGATTAACTATCCATCCATTTTCATTATTACAGATGAGTGTCGACATATTTCCTACGGGGGTTGAGATAACGGGAATACCTCGTCCCATGGCTTCTAATGCAACCATAGGTAAACCTTCATAGCGAGAGCAAATAACAAGTAATCCAATGTGTGGCCATATGGCATCCATTGAGTTTTGATGTCCGTGAAAATGAAGATTGGAAGGTGAGTTGTTTTGTAAGTCTTTTTCCATTGGACCTGAGCCATAAAAATGAAACTGTACTTTAGATAGTTGATTGGCTAATTCAAGGAAACGATCAGGGGCTTTTTCATGACTTAGGCGCCCAACAAATGCAATTTGTGTCCCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //