Array 1 1027-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCM01000011.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1026 28 100.0 32 ............................ TTCAGCACCACAAAATAGCTCAGGCGCTGAAG 966 28 100.0 32 ............................ ATGCAGCATTTACCCCCATTGACAAAAGTAAA 906 28 100.0 32 ............................ CAAACATCTGTTTTTAACTGAATTAGAAAGTC 846 28 100.0 32 ............................ ACGGGAAAATCAAAGGGTTACCGTAATCTTCG 786 28 100.0 32 ............................ GGCTGGCGGGGCTGTTGGAACAATTCGGAAAG 726 28 100.0 32 ............................ AGTTGCTTGTTGGCAGCTTCCTTTGCCACCCG 666 28 100.0 32 ............................ AGAAAAACTGACAACATTAATCATGGTATTAC 606 28 100.0 32 ............................ AGTATTTCATGTATTTACTGAGGATGGAAAAG 546 28 100.0 32 ............................ GTTCTTTTATTTCTGAAATTCCAGATTATCTT 486 28 100.0 32 ............................ GCTGTCAGTTGTGTTGCTTTACGTTATGAGTA 426 28 100.0 32 ............................ TGACATCCCCAGGATCAGTTGCAAGCCAAAGG 366 28 100.0 32 ............................ TTCTCAGGCAACCGCATTACCGCCATCAGAGC 306 28 96.4 32 ..........A................. CATGAATTTTTATCCTCTGTTTTACACCTGCC 246 28 100.0 32 ............................ ATTACTTAGTGTTTGTGTGATCATGAGTTCAA 186 28 96.4 32 ...........T................ CAGTAAAATTGACCCATGGGGAGATTTACCGC 126 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.1 32 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAAACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCTGTGAGATAAAAGGTGATAATTTTTGTTGATGACAGAGATCAGTGAATGGCTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATGCCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAACG # Right flank : ATAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 7809-6161 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCM01000011.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7808 28 100.0 32 ............................ TCAATATCTTCACCGTCCGCTCTTTCCAATAA 7748 28 100.0 32 ............................ ACTGCGTTAGATCGTTTTCGATACTTACGAAC 7688 28 100.0 32 ............................ CGGTGAGGTGTTCAGCCGATTCGAACTTCAAT 7628 28 100.0 32 ............................ CGAGTGCATGGCTGACATAAATGCATTTAAAA 7568 28 100.0 32 ............................ CAGTTAACACGCATACAGTGTGGATTGGAATC 7508 28 100.0 32 ............................ TCTTACGTGCCAGAAGGCAAGAGGACGCTAAC 7448 28 100.0 32 ............................ CACAGTAGTTGTAACCGATTCATTTAAATTGG 7388 28 100.0 32 ............................ GCCGCAGCAACTAATCGACTAGTAATATCTGA 7328 28 100.0 32 ............................ ATTCAGATCAATCGGTACAGGAATGCCGGCGA 7268 28 100.0 32 ............................ AGGAGGCAATGCAGAAGAGAAGCCAAATTCAG 7208 28 100.0 32 ............................ GGTCACTTCGGGATAGAGTACTCCGTCAAGTG 7148 28 100.0 32 ............................ TGATGTTTTAGTATTCGTATCTAACTTTATGA 7088 28 100.0 32 ............................ CGGAAAATTAAATACCTTGCAACTTCGCATGA 7028 28 100.0 32 ............................ ACAATAAATTCCTAGATGCAATATTGCGTTCT 6968 28 96.4 32 T........................... GTATGAGCTTTGGGAAATTTTTGATGCCGCAG 6908 28 100.0 32 ............................ GGCACAAAGGTGACCGAGAACATCGCAACCCC 6848 28 100.0 32 ............................ ATCCGCAGGTTCATTAAACGACACTTGCCAGT 6788 28 100.0 32 ............................ CAAATGGCTCAAAAGTTTATATTTCAAATAAA 6728 28 100.0 32 ............................ GATTTAGCTGGAGTATTTTTTGTTTTCTGAAT 6668 28 96.4 32 .....T...................... GTGACATGCGCAAAACAAAGACGACTGATGCT 6608 28 100.0 32 ............................ GCTTAAACAGAATCATGGGGCGCTCTGGCATT 6548 28 100.0 33 ............................ TGTCCAGACGCATGGCCCGGCGCAAATCTGCGA 6487 28 100.0 32 ............................ TCATAACAATCACCTTTTATTTATTAACTCAC 6427 28 100.0 32 ............................ TACTACGCCTACTACGAAGGGTATGACTGTAA 6367 28 100.0 32 ............................ AGAGACTCAACCAACGGTTTCCCTCAGTCATG 6307 28 100.0 32 ............................ GTTGCTATAAATTTGGTCCAGTGAGGGACTGA 6247 28 100.0 32 ............................ GTGGATTCATTTAATTTAGACACTGATTCTTT 6187 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATATTGGCAGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTGTCAGCTTGTAGTTATTTGGTTTCTAATCAATAGATGAAGGGATCCTGACACCAATATCTAATACAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCAAAGTGTTCAAAATAATGTTTGAATTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAATATCTTAAGGCAAGTTTAGTTGCTCTTATGTCTGTTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCCAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTGATTTAAAAGAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CACGATAACTGCCTAGGTTGTTTGGTATAAATAGAGGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCGTCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCCGTACCCGGTGGTTGAAGTCATTTTTTGTTTTAAATTGCAAATGTGACTTCATCTATTTCAGGTTAGCTGTAGTAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14844-14036 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCM01000022.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14843 28 100.0 32 ............................ GTACAGTGGGACCATTATTAGTAGATGAGATT 14783 28 100.0 32 ............................ TTACTTGTCTAATTTAAAGACATACACTCATC 14723 28 100.0 32 ............................ ATCCCTCGCAAATAGCAACTGCATAATCTAGC 14663 28 100.0 32 ............................ AATTGAAGCCGCATTATGTGGATGGGCTGAAT 14603 28 100.0 32 ............................ AATGTGAAATAATGCTTACCTTCATTTTGACA 14543 28 100.0 32 ............................ ATTTGAGAACGCGTTTAAGCTTGTCAAGTCAC 14483 28 100.0 32 ............................ GTCATTGGCTAGCTTATGCCGCGGGTATTTTT 14423 28 100.0 32 ............................ GGACAAGCCAGATTTGACCGGGGTAAAAACAA 14363 28 100.0 32 ............................ AGACGGGATTGACTTTGAATTTGCACCACTTT 14303 28 100.0 32 ............................ AAAGTGAAATGTATATATCCATCACGCGGCTG 14243 28 100.0 32 ............................ CAAAAATAAACGAAGCCGTCTGATAATGGCCT 14183 28 100.0 32 ............................ CGCCCCCCGATATCGTTCAACAACCGCACGGC 14123 28 100.0 32 ............................ CATCTCAAACGGTTGCTTTTCACGGAGAAGAA 14063 28 85.7 0 .......................TT.TT | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCCTGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTATTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGCGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTGTTAAGCTGCACTGTCACCAGATAAAGTAAATTAGTCATGATGAATTAAATCACCATTGAAAATCTGCCTTCTCCACACCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCCTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAACTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : AACGGAGGCAATCATGAGTCATACCTGTTACGAAACTGATGTGGTCGTTTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAACTCTCTGAGATCGATATAGTTAATATTGCCGAGGAAATTGAGGACGTGGGTAAAAGTGAAAAACGTGAACTAGCAAGTCGTATGTCAGTTTTGTTATCCCATCTTTTGAAGTGGCAATTTCAATCTGGGCGTCGTGGTTCAAGTTGGCAACGAACTATTAAAGAGCGGAGAAAAGCGCTGGCATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCAGTTTCTTCCGCTATCGATGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAAGAGTTCTATCCTGAGTAAGCTCCAATGAGTTGACTTATTTTGACGCACTGACTTCGATTGGTGCGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1084-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCM01000067.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================== ================== 1083 28 100.0 32 ............................ AATCCGAGAGCCATCTGACCAATATCATTGAT 1023 28 100.0 32 ............................ TCAATCCACAATATCGAATGATACCGATTAAT 963 28 100.0 32 ............................ AGATGTTAATAACAGGGGAAGCCTTCTTGTAG 903 28 100.0 32 ............................ TTTAGGAACGTTAGCAGATAAAGCAACACGGA 843 28 100.0 32 ............................ AGGAGCTTCCTTGCTCCCGGATGAGCCATAAC 783 28 100.0 32 ............................ TGATGAAATTGCTCGCGTCGCGCGATGGGAAC 723 28 100.0 32 ............................ TGGTTTTGATGAACTGTGAGCATTTGTATATA 663 28 100.0 32 ............................ TATGAGACATTAGCCAGGGACGACCATCAGGA 603 28 100.0 32 ............................ ACTTACCTTAGGGATCGGAGAATAAGACACTT 543 28 100.0 32 ............................ TCTATTATCTTGTGCGTATTTTTGTGCTTCTG 483 28 100.0 88 ............................ GTGGAAACAATTATGTGGTGGTGAAGAGTGGAGTGCACTGCCGCACTGCCGCACTGCCGCACTGCCGCACTGCCGCACTGCCGCACTG 367 28 92.9 33 CC.......................... AGATAGCTAGTGCGTTCCTTGCACTTTATTCGC 306 28 100.0 32 ............................ TTAAATGGCTACCATCCATGCTATGCACAAAG 246 28 100.0 32 ............................ GTATTGCTGTAAGTGAAACCTTAAACTTCTTG 186 28 100.0 32 ............................ TTGATCAAGAACAAGCAGATAGAAATGTCTAC 126 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ======================================================================================== ================== 16 28 99.1 36 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAGACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCAGTGAGATAAAAGGTGATAATTTTTGTTGGTGACAGAGATCAGTGAATGGTTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGAATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAATGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATACCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAAC # Right flank : ATAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //