Array 1 32284-31917 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFN01000002.1 Streptococcus hyointestinalis strain NCTC12224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 32283 36 100.0 31 .................................... ACAATAATCGTCTCGTTTACTTTCCTATTTC 32216 36 100.0 30 .................................... ACTAAATACTTTTTTTCAAGAGTTACGATA 32150 36 100.0 30 .................................... TTTTGAAATGGTGTTATCATCAGCATAATC 32084 36 100.0 30 .................................... TCACCTCTGATAACCTTGATATGCGCCATT 32018 36 94.4 30 .................GT................. AAAAAGTAGAGAAAATCTACACCCAACTTT 31952 36 94.4 0 .................GT................. | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.1 30 GTTTCAGTACCATGCTAAGTTGAATGGTTCTCAAAC # Left flank : CGATGTAGTAAGAAGTAATCCAAGTTTTTTTACAATACTAAAGTATGGCGTTAGATAGTGAGGAGAATTGATACGCTTATAGTCACCTTTTGGAGTGATAGAATTACCATATCCTGCAAAACCGAAGATTGTTAGTGCACCAATGATAAGATCCGTCCCTTTATTATCCCATTTCTGGATAGTATTTACGAAAAATAGGGCGAAAATCTGAATACAAAGTAAAATACCTAGTAATTGAAAAGGGTGCTCAAAGTAGTATTGAGCGATATTTGTCAAAAAGTTCATAACCTAATCCTCTTTCTATAATCTATGCTAAGTAATTTCTTATACCTATTATATCATTGAAACCCTAGACCACCAAACCAACTGGCAGTCTACAGCAATTTTTTGCTAACAAAATGTGTGTGAGTATAGGTATAAAAAAAACAACCCTCATGGTTGTTGCTTTAATACTTATATGGTTCTCAAACGCCAAGTTGTCAATTTTTCAGCGATTTGAT # Right flank : CTCATTAGCTGATACCATCTGTGCATGGTCAAGTACCCTTGCCGTCTTTCCGCAGATTCTGGCAGAGCCACTTGAAGTTCTCGCTAAGCGATGGTCTCTGAATTGACCTTGTTTATAGTATAGCAGAACAAACTCCATTTAGCAATTCACGTGGGTAATGAGTTGCCTTTTGGTTTAAAAATGGTATAATGAAGATAGAAAAAGAGTTGAGCTGGAACTCAACTCCATGTAGAACCGTTTAAGACGGTGACTCAGAGTTTTCATATTTTTAATCAAAAATAATCGTCCTCGTGTCAAAGTAAGACGGTTATTTTTTTGTCAATTTGATAAGTTCAAGTAAGAGCTTAACGAGTGAAAGCACAAAATTGCCTGCCACAAACAAAAGCGTCAATACCTCAAACGTTGACAATTATGTCTCCTCCTTTCCGTCAGATTTTGATGAAATGCACATAGGCATCACCTCACTTTCAGAAAACAAGAGCCACCGTCTTAACTTTTCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTACCATGCTAAGTTGAATGGTTCTCAAAC # Alternate repeat : GTTTCAGTACCATGCTAGTTTGAATGGTTCTCAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 43641-44006 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFN01000002.1 Streptococcus hyointestinalis strain NCTC12224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43641 36 100.0 30 .................................... AAGAAAAAGGTGTTAGCCCCGTGTGGTTTA 43707 36 100.0 30 .................................... GTGGTGCGCTTCATCAATCAAAATGATTTC 43773 36 97.2 30 ........................A........... AGCGTTTGATTATTGTTGAGAAATTAGATG 43839 36 100.0 30 .................................... AAAGCAAGTTAAAATACCGTTTTCGCCAAT 43905 36 100.0 30 .................................... CCCTAGCCAGATTAGACTATATCTTACTTT 43971 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTTCAGTACCATGCTAGTTTGAATGGTTCTCAAAC # Left flank : TCACCTATTTCTGATATTTTTTCTAAAACTTTAGGAGCAATAACAATTTCGTAGAGCTTAGAGTCCAAAGCGTTCCCTCGCTTCTTTAAGTGTTACTCCTTCTCCTTGCTCGATACTTTCAATACCAGATTGAACCTCTTTCTGAAGTTCTCTGGCCCATTTTTGCTGTTCGAGTTCTTTCTCATCTAAAAGATTGACTTCACCTGTAATTGCTATTTGTTTAACAAAAAGATCCAAAGCTCTCGATAAACTCATACCATTATTTTTAGAAGCTCTTTTTGCTATTTCAACCATTTCTTTATTCGTTGCAAACCTAAAATCATAATCTCTATCCATAAGTACAACCATATATTTACACCCCCTTTATTTATGGTTTAATTATAGCGCTTTTTTATATTTTTCGCAATTTGAGGCAACAAAAAAGCAACTTAGTGTTGTTGCTACTGCAATATTCAGTTGGTTCTCTAACTAATTTTAGTTAGAAGAAAGATTATTGACAG # Right flank : CCTCATTAGCTGATACCATCCGTGCATGGTCAAGTACCCTTGCCGTCTTTCCGCAGATTCTTGCAGAGCCACTTGATGTTCTCGCTAAGCGATGGTCTCTGAATTGACCTTAGATATAGTATAGCAAACTTAGCCCTTTTTAGCAAACACCATGGCAGTCATGGTAAAGAACGACCAGGCCTTATAGTGCTAAAATTATCACCTCAAAACTGCAAAAAAACCTTTGTTATCGTATTTAGAGACCAGTCCACATCACGCACTTTTTTTGTAATTATTCTCCTCTCCAACATAATAGGAATGCTGCTACTTTAGAATGCTTGATACCTTACCATACTCTAGCCAAGAATACCTTTTAAGGATAAAATAAGTTTGTGTTTCAGAAAGTTTCCACATGTATTTTCATATTAGGATCAGGATGGAGCATAACAATATTTTTTAGAAACAAGGAGTTTTAGTTAATGGATTTTAGTAAATCGAAAAAAGCTATCTTAGGTACAGTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTACCATGCTAGTTTGAATGGTTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 116353-116586 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFN01000002.1 Streptococcus hyointestinalis strain NCTC12224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 116353 36 100.0 30 .................................... ACTGACGTTAATACGACTCTTGACCTCGAA 116419 36 100.0 30 .................................... TCTAGGTATTTCATTATTATTAGGTTTCAA 116485 36 100.0 30 .................................... ATCAAATCTCTGAAAAAAGGGGAATAACCA 116551 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTCAGTACCATGCTATCTTTGATGGTTCTCAAAC # Left flank : CATATTATTTAGCTGTATGACGAGTCAAATAACGATTGTAATGAACATCGCTAGAAGCAACCTTTTGCAATAAATACAAGTGTTTATTGGTACGCTCATCAAGTTCTCGGCCTCGAAGTAGGTTATAAGCTACTTGAGGACTAAATAAACTACGCATCACTTTACGCTGTTCTTTTAAACGCTCGCCTTCAACGTTCATGTTTAATCGCTGCAGTTTAAAAACTCTTAGCCAATTATTCATTACATTTCGCCCCTTTCTTACATCTATCTGTACTCTTAACTATTATACCACTTTTTTAAGCTTTTGTATTTGCTTTATGTAGAAAAAACAATACAAAAGCTTGCACCAAAACCAATAAAGTGATAGGGGATTCAATATGACGCCTCATACTTTCTGTAAGTGCCTTTTCAAAAAAACAAAAAAAGCAACGTAACTTGTTGCTACAGCGATATTCAAATGTTTCTCAAACCTTCCACTAAGTAACGCGAACTTAGACTGG # Right flank : CCTCAATAGTTGATACCATTGCATGGTCAAGCACCCTTGCTTTCTTTCCGTAGATTTCAGCAGAGCCACTTGAGGTTTTCGCTTAAACGATGGTCTCTGAATTGACCTTGTCTATAGTATAGCAAAATCTACCCTATTTAGCAATCTACATGGCATTCAGAATAAAGAATGGCCAGTCCACTTTTTTGGGGAGATTTTTAGACCACTATACCCCTAACTAACAAAGAAGAGGAAAACACCTCTTTTAGCAATCCTCCTTTTCTTTATCCATATCCAAGGTGTATTGATGACCGAGATACTTATAGCTGCGAGTGGACTCGATCATCGTCACTTCAAAGACAAAATAGTGGTTCTTGTTATCCTTAGCTTGCTGCTGATTTAGCCGGAAGTAATCTCTCTGATTAGCTGTCATCATACGCAATATATCATCAGTAATAAAGGTGAGAGGGATGTCAAGAGCTGAATACTTGTAGTAGTCCTGTTCAAAACGCTTGAAATTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTACCATGCTATCTTTGATGGTTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 704250-709632 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFN01000007.1 Streptococcus hyointestinalis strain NCTC12224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 704250 36 100.0 30 .................................... AATCTAGCTTATTATAGTGATTATTGAAAA 704316 36 100.0 30 .................................... TAAAGTTTATATATTTTACAGTCTGACGGC 704382 36 100.0 30 .................................... CGCAAAGTTCGTTATATAGTGTTTCAAGTG 704448 36 100.0 30 .................................... AAACAAAATCGCTGAACTTAACGCAATGTT 704514 36 100.0 30 .................................... GCAACATGTATATCATCTGCGCCGCTAATA 704580 36 100.0 30 .................................... TGCCAAAGACCTCTGCATTGCCACAGACCC 704646 36 100.0 30 .................................... AGACGCTTTACAGGATAAGCTTGCGAAGCG 704712 36 100.0 30 .................................... TTTGTGATGTTCTGCGTTATCCACGGGTAT 704778 36 100.0 30 .................................... CAGCCTTGAAAGAACAAATTTTCAAGGACA 704844 36 100.0 30 .................................... GGGCTATGTAGTCATAATAAGATGGTGCGT 704910 36 100.0 30 .................................... GTGGCGATGGAAAAAGTTTTAACTATATAG 704976 36 100.0 30 .................................... CGTTGTTGTTCCCTCGTACCCGATTGTCAA 705042 36 100.0 30 .................................... GTGCTAGGTAGTCGTAGTAGCTTGGGGCGT 705108 36 100.0 31 .................................... CTCAAAATATGATGACGCTGACAAGCTTTTA 705175 36 100.0 30 .................................... ACTAGGTTTTGCGGACATTATGAAAGAGCT 705241 36 100.0 30 .................................... CTTACGTTTTAGTTGATGACGAGGAGTTAG 705307 36 100.0 30 .................................... GGTGGTTCGAAAGTTAGAACGGTATCAGCA 705373 36 100.0 30 .................................... TTCTACAGACGTTGCTAAAATGCAAGCTTA 705439 36 100.0 30 .................................... GTCACCGCTTTTTATTTGGCTCGCTTCTGT 705505 36 100.0 30 .................................... TGACTTCCTCGCAAAAGAAGAAGACTTTAT 705571 36 100.0 30 .................................... AAGCCCAGTGCTTTGTTCATCATCTTGTCA 705637 36 100.0 30 .................................... CGACTGACTCACAAGTCAATGCGTGGATGA 705703 36 100.0 30 .................................... CTTTTCAAGCGCTTTGAGTTGACTGTTGCT 705769 36 100.0 30 .................................... CGTTTGCGCATTTCCTCTAACTGTTTAGCT 705835 36 100.0 30 .................................... ATAATTCTCTTAAAATCGAGAGACTCTATG 705901 36 100.0 30 .................................... TGGGGTAATGCTATCAAGTATATGTTGCGC 705967 36 100.0 30 .................................... AGGCTACTGTACCATTACTAGCCACCCTCA 706033 36 100.0 30 .................................... AACAACACAAAAAACATGCTACTATGCTGA 706099 36 100.0 30 .................................... TGAAAGTAGCCCCTCCCAAGACAACAACAC 706165 36 100.0 30 .................................... AAATCTTTTATGGCAATACGCACCGGACTT 706231 36 100.0 30 .................................... CGGAACTGTCAAAAGGTGGTGAATATTTAA 706297 36 100.0 30 .................................... GCTGGCAATATCGGGCTATCAAAGTTCACG 706363 36 100.0 30 .................................... AAAGCAAATGAAAATATATATTTAACAGCA 706429 36 100.0 30 .................................... AAATACAGCACAAATTGCCGTCTATAAAGA 706495 36 100.0 30 .................................... TTTCTCTTTGTGTTGGTTGCCATTCTTTAG 706561 36 100.0 30 .................................... TGGTTCTTTTGAGTTAGTGAAAGAACCGTC 706627 36 100.0 30 .................................... TTTCTCTTTGTGTTGGTTGCCATTCTTTAG 706693 36 100.0 30 .................................... TTATTGCTTCCGCTGTTGTTATCTTGGGTG 706759 36 100.0 30 .................................... ATCTTGATTGGGAATCGTACCTTTAAACCA 706825 36 100.0 30 .................................... CTAATGGCGACTCTAAACTGTCAAAACAAG 706891 36 100.0 30 .................................... TTCTATAGAACAAGATTTAAGCGGAAAAGT 706957 36 100.0 30 .................................... AAATAATAACACGCAAACCATCAAGAGAAT 707023 36 100.0 30 .................................... GCTACGCTACCAGCTTTTGGCTTGCTCATA 707089 36 100.0 30 .................................... ATGACGTGACAGAAAAGCGTTTACTGATTA 707155 36 100.0 30 .................................... TAGTATAGAGCAAGACCTTTCGGGAAAAGT 707221 36 100.0 30 .................................... TTTTTGTAGCGTTTCTTGGTTGATTGCAAT 707287 36 100.0 30 .................................... CGTTGTAGAATGGTTCTTTTAGCATGTCTT 707353 36 100.0 30 .................................... ACCTCGTTTCTTAAAATATTTTGATTCATA 707419 36 100.0 30 .................................... AACGCTCAGCGCTTTGCCTTTGCAACGCTT 707485 36 100.0 30 .................................... CATCCAAAAACCCAAATGTCTCACCCGCAT 707551 36 100.0 30 .................................... CGTTTTTGGGATTTCAATAGAACCGCCCCT 707617 36 100.0 30 .................................... AAACTTGCTATGGCAATACGCACCCGACCT 707683 36 100.0 30 .................................... TTAGTATAGTGTTTTAACTGTAACTCTTTT 707749 36 100.0 30 .................................... TCAAGCCCCTTATTATTCAAAAACCAGTCA 707815 36 100.0 30 .................................... CGATGAGTTGATGGAAAAAGCTCTAAAATT 707881 36 100.0 30 .................................... CATCAGCGACTGCTGACCCTAACGGCTCAT 707947 36 100.0 30 .................................... AGCTCAAGGAGCTGTTTTACAATACGAAAA 708013 36 100.0 30 .................................... TCAGCTGTGCCCGTGGTATCTGATAACGTT 708079 36 100.0 30 .................................... TCGACTTGATTCCGTTTGGCGCTAACAATC 708145 36 100.0 30 .................................... TGTCTGAACTAAAGTTTGTAACGCCTAACT 708211 36 100.0 30 .................................... TCAAAGCCCCACTTATCAAGCTCCTGCTTT 708277 36 100.0 30 .................................... CATAGCCATACTCTGACTTGTCCCAACGCA 708343 36 100.0 30 .................................... TTCCTTGATTTCCACGTACTTTTGACCCTT 708409 36 100.0 30 .................................... TTTTGGGGCTACTAATTACTGGCACAGTGC 708475 36 100.0 30 .................................... CGCTAGAGAGGAAGGAGGTGAGGTCTGTTT 708541 36 100.0 30 .................................... CTCTAAAAGTTCACTTAATTCTAAGTATTT 708607 36 100.0 30 .................................... AAACGGTGAGACATTACTTTTTGTCAATCG 708673 36 100.0 30 .................................... TTCCACAAATTCATATGCTGTAAACCATAC 708739 36 100.0 30 .................................... TATCCTCTCTAGTGCCTTGATGAACGGTTT 708805 36 100.0 30 .................................... AAGAGATGCTAAGGCTGGGACAGGAAATTA 708871 36 100.0 30 .................................... CTAAACACAATAAAATGTCACAGCGTGAGT 708937 36 100.0 30 .................................... ATCAAGGTTGTCGCTAGTCACCGCATGCGC 709003 36 100.0 30 .................................... AGGACTTCCATTTGTGCGTCGTCCAAGTCG 709069 36 100.0 30 .................................... GCAATATTCGATTTTATCAGCGATATACTT 709135 36 100.0 30 .................................... TCCTAAGGTCTATACACAGGGTTTTGTCAG 709201 36 100.0 30 .................................... AATTTTTGAGGTTTTTAAGGGGTGTCATGA 709267 36 100.0 30 .................................... TGCAGAAGATGATAGCGCCTTATGTCTTTC 709333 36 100.0 30 .................................... TGAGAACGAAGGCATTACAACAATGCTTGA 709399 36 100.0 30 .................................... TAGGTGCGCTATTGACAAGGCTTTAGTGCA 709465 36 100.0 30 .................................... CCAGAGCTGGCACTAGACCTTGACAACCTT 709531 36 88.9 30 ............................T.T..C.T GAGCTATTTTGCTCTTGCAAGCTTAGCATG 709597 36 80.6 0 .........T...AT..C............TT...T | ========== ====== ====== ====== ==================================== =============================== ================== 82 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTCCCAAAAC # Left flank : GCAGTTGAATGCTAAGCCAGAAGTCAAATCAATGATTGAAAAGTTGGCATCAACGATTACAGAGTTGATTTCCTTTGAGTGCTTGGAAAATGAGTTGGACTTGGAATACGATGAAATCACCGTTTTAGAGCTCATCAAGGCGCTGGGCGTCAAGGTTGAGACAGCAAGTGATAGCATTTTTGAAAAATGCTTTGAAATCTTGCAAACCTATCATTATTTGAGTAAGAAAAAGCTCTTAGTTTTTGTCAATATTGGTGCTTATTTGACCAAAGACGAGGTGGAAAAAGTAATTGAGTACATTTGCCTGTCTCATCAGACGGTACTTTTCATTGAACCACGACGACTATACGACTTTCCGCAGTATGTGCTGGATGAAGATTATTTCTTATCTTCTGAAAACATGCTATAATGAGAGAAACAACTGGAGCCATTTGAAACTGAAATCTAGCTGAGATGAACGGCGCGATTACGAAATGTCGGGACAAAAATTGGTCCACGAG # Right flank : TTCGAATGGTCCTTAAAATAGAGATCTTATGTTATAATAGAGTTAAGTTTTAGAGCGGAGCTATTTTAATGGCTTCAATGTAAAGTGTACTTATTACGGACGTATAGGTATACTGTTAGTAATAGCTAATAAAGGAAATACGTATGAAATTAACATTATCTGAGATTGCGAAAGTTGTCGAGAGCACACAGGCGCTCTCTGATGTCGAAGACGTCCCCATAGCGTCGGTAGAGTTTGACAGCCGAAAAATCACCAAGGGAAGTCTCTTTGTCCCTCTAAAGGGAGCTCGTGATGGGCATGATTTTATTGAGACTGCCTTTGCAAATGGCGCTGTTGCAACGCTTTCAGAGCGTCCGCTAGACAATGGTACCTATATCCTCGTCGAGGATTGCCTGCAAGCTTTTCAAAAGTTAGCAGCTTACTACCTTGAAAAAATGCGTGTCGACGTGATTGCTGTGACAGGCTCTAACGGCAAGACCACGACCAAGGACATGATTGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 726037-726336 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFN01000007.1 Streptococcus hyointestinalis strain NCTC12224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 726037 36 88.9 30 ..............T.....T.......T.....G. CCCCTGTGCCGTAATATCGCCGCTCCCATT 726103 36 100.0 30 .................................... GAGGTCGCAGGGGCAAAAGTAAATCTGAAT 726169 36 100.0 30 .................................... TGGCAAAAAGGTCGGCACTCGTCTGGTCTA 726235 36 100.0 30 .................................... GCTATCTCACCGAGTCGCTGAGCTTAACAA 726301 36 88.9 0 ..............T.....T.......T.....G. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTCCCAAAAC # Left flank : TGCAAACGGAGTCATCGCTGTTTCTGAAGGAGCAAACATGCCTTCAACACTTGGTGCTATTGATGTCTTCTTGAAAGCAGGCGTATCATTTGGTCCAGCTAAAGCAGCTAACGCTGGTGGTGTTGCTGTATCAGCACTTGAAATGGCACAAAACAGCGCACGCACATCTTGGACATTTGAAGAAGTGGACAGCAAACTTTACGATATCATGAAAGGTATCTACGACAACTCTGCAGCAGCAGCTAAGGAATTTGGATATGAAGGTAACCTTGTTGTAGGTGCCAACATCGCAGGATTCCTCAAAGTCGCTGAAGCAATGTCAGCACAAGGTATCGTCTAAAAATGAAAAAATGACAAGAGGTGTAGCCTCTTGTTTTTTTGTTGTCTACTAAGGAATATGATTTTTTGGTATAATAAAAGAAATGGCTTTCGGGCTCATCTCCTTGTGTTATTTCGAATGGTTCCAAAGCGTCGAATTATCAGTGCTTACGATAAGGACA # Right flank : CCTTATTAATTGATGGTATAGGTATTTATTTTAAAGTTTAGAAATGAGAGTTCGTTGATGATCAAAAAAATTGTAACAGACCCGCTGTTTTTAAGTCAGAAGTCCATAGAAGCTACACAGGCAGATGTGTTTTTGGCGCAGGATTTGCGAGATACTTTGGCGAGTCACCGCAAGCATTGTGTGGGGATGGCGGCAAATATGATTGGGGTCAGTAAGCGTGTGATTATCATCCAGATGGCGTTTTTTGATCTGGTCATGTTCAATCCCGTTGTGACCCAAAAATCTGGTCTTTATCAGACGCAGGAGTCTTGCTTGTCTCTGTCTGGAAGTCGTGTGACTGAGCGCTATGAGGAGATTACGGTTCGTTTTTATGATGAAAAATGGCTTCCTAAAACGCTGACTTTGACAGGCTTAGAGGCGCAGATTTGCCAGCATGAGCTGGATCATTTAGAAGGGATTTTAATCTAGTGACGATTTGTGTGACGACCTCTTTTCGCCCA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTCCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //