Array 1 246965-245897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWI01000001.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32779 N32779_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246964 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 246903 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 246842 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 246781 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 246719 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 246658 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 246597 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 246536 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 246475 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 246414 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 246353 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 246292 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 246231 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 246170 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 246109 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 246048 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 245987 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 245926 29 100.0 0 ............................. | A [245899] ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGTGCTCGAGCCGACATTGATCCCGCAAAAATA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6242-6939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWI01000061.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32779 N32779_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6242 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 6303 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 6364 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 6425 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 6486 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 6547 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 6608 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 6669 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 6730 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 6791 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 6852 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 6913 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10955-10322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWI01000066.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32779 N32779_contig_66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10954 24 82.8 32 -----........................ GTAATGTGCGCCGCGCCGGTGATATCTACTTT 10898 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 10837 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 10776 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 10715 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 10654 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 10593 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 10532 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 10471 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 10410 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 10349 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1595-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWI01000067.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32779 N32779_contig_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1594 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 1533 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 1472 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 1411 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 1350 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 1289 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 1228 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 1167 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 1106 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 1045 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 984 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 923 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 862 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 801 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 740 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 679 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 618 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 557 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 496 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 435 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 332 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 271 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 210 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 149 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 88 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCTTCCTGCGCTTTGGCCAGTTTGGAACCCGCCG # Right flank : C # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWI01000077.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N32779 N32779_contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 112 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 173 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 234 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 295 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 356 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 417 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 478 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGGAGATTTTTCTTGTCCCGCCACACCAGCGGCTG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //