Array 1 309770-311018 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXUT01000001.1 Salmonella enterica strain BCW_3059 NODE_1_length_411257_cov_2.62689, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    309770	    29	 100.0	    32	.............................	GCAGTTCGATAAAGTAGGTCGGCTCCGGATTG	
    309831	    29	 100.0	    32	.............................	GCCTGTTGCTGACCAGTAACCCGCTACTCCCG	
    309892	    29	 100.0	    32	.............................	GAACACAATCGGCCAGTGAAAGTAACACATGT	
    309953	    29	 100.0	    32	.............................	CACCAGTAGAGCAAATCGCTGTTGCGGCCAAC	
    310014	    29	 100.0	    32	.............................	AATCCAGTCAAACATAACCATATCCTTATCAA	
    310075	    29	 100.0	    32	.............................	CAGATTAACCCTGTGGTCACAACACCCCTGAT	
    310136	    29	 100.0	    32	.............................	ACACGCTGGCGGCTAACTTCAACAGGCTGACC	
    310197	    29	 100.0	    32	.............................	GTGACATTTGTTACCGACACGGAAGAACAGGA	
    310258	    29	 100.0	    32	.............................	GATTTCCGCGACGTGCTGCCGACGCGTCTGGA	
    310319	    29	 100.0	    32	.............................	AGTGACGTTATCCAGCAGTACAAACGCTGGGG	
    310380	    29	 100.0	    32	.............................	CCGGATGAATCGTGGATGAGCGCACAACAGGA	
    310441	    29	 100.0	    32	.............................	AACACATTGGCGTAAAAGACGACGTCACAAAC	
    310502	    29	 100.0	    32	.............................	GGGCTATTTGGAGGGGGCGGCGACGCCTCCAG	
    310563	    29	 100.0	    32	.............................	GCTGGAGTGCAGCGTCAGCAGAACAGCGGAAA	
    310624	    29	 100.0	    32	.............................	ACTACCCGGAGCAATGACCCGCAGTACTGCGA	
    310685	    29	 100.0	    32	.............................	GCGACTATCGATTTAACAGGTAGATCGTCAAG	
    310746	    29	 100.0	    32	.............................	AGGGTACACCGTTCCGTTACAGCTTCAGTGCG	
    310807	    29	 100.0	    32	.............................	ATGATTTTCTCCTCAATTACCCGCTATAATAC	
    310868	    29	  96.6	    32	.............T...............	TTTGCGCTCGCTGACGTCAACAGCTTCTACGC	
    310929	    29	  96.6	    32	............T................	CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC	
    310990	    29	  86.2	     0	............T............G.TA	|                               	
==========	======	======	======	=============================	================================	==================
        21	    29	  99.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT
# Right flank :  ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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