Array 1 32525-34330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000002.1 Thermotoga sp. TBGT1765 Contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 32525 29 100.0 36 ............................. GCTTACTTCTTTGCATAAGTAGTTCTGGGAACTCCA 32590 29 100.0 37 ............................. GATCGATGCCGATTTGCACTTTGTGTTCTGTTTTTTT 32656 29 100.0 36 ............................. GACGGCACTGTGTTTCTGCACGGGAGGGCTGTAGTC 32721 29 100.0 37 ............................. GCAGAAAAAGTTCGAACATCTTTCTGACCACAACTGC 32787 29 100.0 38 ............................. AGAATTTCAGCTATTTTGTACTGTGAAAGACCCATTTT 32854 29 100.0 36 ............................. GATCCTTGTTGAATGGAAATTACTTGACTGGTTAAG 32919 29 100.0 37 ............................. GATATACCCAGTGAAGGCATACGTTTCTCGATACGAA 32985 29 100.0 37 ............................. ATGACGAATGCCAGGATTGAGAGGACAGCGATGCTGA 33051 29 100.0 35 ............................. GCAGATCACAGGTATAAGCGATGTGGACATACTGA 33115 29 100.0 36 ............................. ACTATATGTGGTATTCTATTTTTAAAGAACACAATA 33180 29 100.0 37 ............................. GCTCCTAAAGCAAAGAGATCGTAGTACCATGTGTAGG 33246 29 100.0 36 ............................. TAGAAAAATATGTACCAGAGGAGAAACTCAAAAGAA 33311 29 100.0 38 ............................. GCTGGAACATACGAAACGATCTCCCTTTCGGACTACGC 33378 29 100.0 36 ............................. ACACCTTTGAAATTCGAATGTCAGATCGTTTCAATC 33443 29 100.0 39 ............................. GACATAGACACAACACGAAGTTTCATAGGAAGGGTACTG 33511 29 100.0 37 ............................. AATGGAAACACCTGTAGCTTGAGAGTGAGAGTCTTTC 33577 29 100.0 36 ............................. CCTTCATCTCCCTCCTTTTGCTTCTCCTCTCTGTAT 33642 29 100.0 35 ............................. AAAATGGCCTCTCTTGCTTGCTCTTTTTCTTCCTC 33706 29 100.0 37 ............................. TATGTCGGCGTTTTCGAAAAGATCGTAGTCACCCCTG 33772 29 100.0 37 ............................. TTTCTGTGTAAGCTTCTTGATCTCCTGTTCGATATTA 33838 29 100.0 37 ............................. TCCACAGAGCAAAAGCGAATCTGAATGAGAAAGGAAG 33904 29 100.0 36 ............................. TTTCGTCGTAGACAACTATCTCTCTTTTTACTGTCA 33969 29 100.0 36 ............................. CTTTTCATAGACGATGTGGACACTGAAGGGAAAAGA 34034 29 100.0 37 ............................. GTGATCTGCTGGGTGATGTACTTTCCGATCGAAAAGG 34100 29 100.0 38 ............................. ATCAAAACAAGCAGTAACCGAAACCGCACAGCCTACTA 34167 29 100.0 38 ............................. TCGGAAAGCCCCAATTTGATATGAGTAGTAATAGCCTC 34234 29 96.6 37 ............................T GGCGTGATGTGATAGATGGAAAGGTGAACCACTGCTA 34300 29 82.8 0 T........C.........A.....A..T | T,C [34315,34323] ========== ====== ====== ====== ============================= ======================================= ================== 28 29 99.3 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : CAACAAACAGTTCTTCATAGAAAGCTGAAGAGAAAGGTTAAATATCAATCTTTCATAAGATTGGAGGCTTATAAAATAATCAAACATCTGCTTGGAGAAGATGAGTACAGGCCTCTCAAAGTCTGGTGGTAGGTGATATCAATGAGGGTAATTTTGGTTTACGACATTTCTACTGAGACAAAAGAAGGAGTGAGGCGATTAAACAGAGTAAGGAAAATAGCTAGAAGATATCTAGACCATGTTCAAAAGTCAGTTTTTGAAGGTGAACTAACGGAGGGAGAAATCGAGAAACTGAAATTTGAACTACAATGCATCATTGATAATGACGAAGACTTTGTGATAATTTACAAAATGCCACCTTCTATTATGATAGAAAGAGACATCCTGACCAACACGGACGATCCAACATCTAATTTCATTTAAACAAAACCGGAGGTTTGACGCAATACTCATCTAACAAATGTTCTATAATGTGTTTTTTTACTGAAAAGCTGAATGCG # Right flank : TCAATAAGAATTCCCGCATCAAGCGGGGCTTTTTTCTTACACATTTTTTGAAATCTGTACTCAAGGGGGATGGATGGGATATCAAGCAAGACAAGAAAAAAATTAAAAACGAACTTTTGTTGGAAAGAGAGTTTCTGTTAGAGGGAAAATCAAAGTGTTTGGTACCACAGGAAGTCCTTTCTCGAAAAAAACAATTCTTATAACAACTGTGAGGTATTTAGATAAAAAGATCAAGATAGATCATCTGTGGGTTTCGATCAAAAAAGGCACTGAAAATATGGATAAGAATTTTATAACCCTTTGAAATGCGCTTTTGAGAGTTCTTTAAGGAGGTGTTTGGTACGATGATTTTTGTGGGAGATATCAGCACGCTGGATATGTGCAGGCGTAATCATGCGGGAGAAATTAAGCTCAAAGATGTCCTGACTAAGAACGAGGGATTGCAACGTCTTCAGAAGCTAAGATGGTGGTACCTGTACGAGGTACCAGCGACCATGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 16429-17859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000001.1 Thermotoga sp. TBGT1765 Contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 16429 30 80.0 37 T...T.G...A.T.......G......... AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA 16496 30 100.0 36 .............................. AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 16562 30 100.0 37 .............................. ATAGGCTGGACAGGTGCATAGGCCTCTTCGAGTTCGA 16629 30 100.0 37 .............................. CTGTCGAATCTTATTTTTGCTTTTCCTTGCAATACAT 16696 30 100.0 36 .............................. TATCTCAACCTGTGACTGGCCGGACGGCTAGATCAG 16762 30 100.0 39 .............................. AAACAGATGTCCCCCTAAAGCTTGGCGACATCATCACAA 16831 30 100.0 37 .............................. GTCGTGGATATCTGCATCTCTCTCCTCTGTACTACTC 16898 30 100.0 35 .............................. GCAGATTGCGGGTTTGTACATCTGCAGGATCTCGA 16963 30 100.0 36 .............................. TTACTCAAAGAGACATGCGCGAAATTATCCAAGGGT 17029 30 100.0 37 .............................. GCTATTATGGTAGTAATTATAGATCTGTGTATCAGAT 17096 30 100.0 42 .............................. TGTTCGTGAAACCCGAGTGGCTCATGGGTTGGCTACTCAACT 17168 30 100.0 35 .............................. TTGGAGAGAGCAAGAGGCAAATACTACTACATGGT 17233 30 100.0 36 .............................. AAGCAATTCCTGGAAGAGGGGGGAGATGATGCTTAA 17299 30 100.0 35 .............................. GGCGCTAATGTCTTGACAAAGTTTGTCTCCAAAGG 17364 30 100.0 36 .............................. TCGAGTTTCGTAGTATATTCCAAAAATTCTTCGCCG 17430 30 100.0 36 .............................. AGTAACCTACAAATTGAAGTAGAAGGAGGTGTTGCA 17496 30 100.0 38 .............................. ACGTTTCTTACACCTCTTCTCGAAGGTTCAGTCTTTCT 17564 30 100.0 37 .............................. TACGTTAACATAAAATCCCCCCCCTTCGATTATAAAT 17631 30 100.0 36 .............................. TAAAGAAATGGTTGGAAGGCGGTGACGAGTATGAAG 17697 30 100.0 37 .............................. TCTTGTGAACAACCTCGTTTCCGGAACACAGAACAAG 17764 30 100.0 36 .............................. GTTTTACAAAAAAGAATATTTTTTCAAAATCAACCG 17830 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 22 30 99.1 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : TGGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGATTTGTAGAGTTTGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATATGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGAGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTTGAATTCAAAGCGCTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 844-482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000009.1 Thermotoga sp. TBGT1765 Contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 843 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 777 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 711 30 100.0 37 .............................. GAGAGATAAGAAAGAAGTGGTATCAGAACAGCTCGAG 644 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 577 30 100.0 36 .............................. GCGGTATAGCGTCGGTACTAGACATAACGTATTCCG 511 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.5 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCCTCGCAGAAAGTCTGAAAATATCCGGACTACTTCCCGCTCTTGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGGCTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCAATGTATCCCATCGATTCCATGCCAAACTGGATGAAGGCTCTTGCCTACATAAATCCCCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCCTTCGGCCTCGATTGGGGAATTCTCTCGATCTTGATGCTGGTGGGGCTCATCCTCGCAATGGAAAGCTTCGAAAGAGCAAGGATAAGTTGAGATATCAACAGCAAAAACGAAGGCAGGGGGTTTCCCTGCCTTTTTGTTTTTTTATGGAGCTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGAGGTGTTTTTGGTGAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATAAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACAC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 1478-182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000006.1 Thermotoga sp. TBGT1765 Contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1477 30 100.0 36 .............................. ATATCACCTTACAAGACAAAAACGAAGACAAAATTT 1411 30 100.0 36 .............................. TCAGGCTGACTGACAAAATGAATAGACTTGAGAAAT 1345 30 100.0 36 .............................. CGACAATGAATCCATCACGGGTTTTCAGAACGCACT 1279 30 100.0 37 .............................. ACAAAAACGTTTCCCAAATCTCTCAGCATTCCCACCG 1212 30 100.0 38 .............................. AATGAAAGCCCAGAGTAGCGGGAAAGCCCCCGAAAAAA 1144 30 100.0 36 .............................. CGTCAAAGCCCTAGCGTGCGACCTCGTTGCTGTAGC 1078 30 100.0 37 .............................. AAGATGCATTACAACTGTATAGAGAACTCTTACCAGG 1011 30 100.0 36 .............................. AGATTCGAGCAAGATTTGGCCATATGGTCGAAGCAA 945 30 100.0 36 .............................. TGGTTCAGAGTATGGCAAAACCATCTGAAATACAAA 879 30 100.0 37 .............................. TAGTCCAAAGCCCTTGCATGGTCAAAGCCTATGCCGT 812 30 100.0 39 .............................. CCCGTGACCTTGTGAAGCGCAATTCGATGACATACGTTT 743 30 100.0 38 .............................. TAGCCGCCTATTGCCTATTTTGTAACGTAGATGTAACT 675 30 100.0 37 .............................. AAGCCGAGTGGGAAAAGCTCGCAGAAGAAGAGCCGAC 608 30 100.0 38 .............................. TTTTGCGTCCTTTGTTGGTTCTATCTCAAATGTGAAGA 540 30 100.0 36 .............................. TGATGAAGTTGGATTCAATATCGTAAAAGTCAACGC 474 30 100.0 37 .............................. ACATGAAAGTAGTTGAAAAGGCTGTGGAATGGTGCTA 407 30 100.0 36 .............................. GTCTCGACCGTGATCTTTCACATAAAACGTTCCGTG 341 30 100.0 35 .............................. AGAGATAAACACCTATTACAATCTCTACTCGGGAG 276 30 100.0 35 .............................. TGAAGTGTATGCAACAGAACGAACTTTTTGGAATC 211 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 100.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : AAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGTGATGGAAACTTCAAGGGCTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAGAGAAATAAAAAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAATACAGAATAAAGCTTCCACCAACGATCTATGGATTTGAGGAACTCCGATGCAAAAACGAGAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAGACGAAAAAGGACAGTTTATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAAATCTGGAGTATTTGAGAAATCTACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTCTTTTTATTTTATAACCCTTTAAAAGCTTATGTGAACTTGGTTAATGTTTCTATACCTCAAATCAGGCCCGTTAGAGCCGG # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTTATCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 102281-102716 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000006.1 Thermotoga sp. TBGT1765 Contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 102281 30 70.0 37 TG...TG.......G.A..TGC........ TGATTCAATATCGTGGGCCACGACTACAGGGGGAAGC T [102284] 102349 30 96.7 36 ....................G......... GAACAGGCAGTTGGTAGACCCCACAGAACGGCGCGT A [102362] 102416 30 100.0 37 .............................. TGTGCCATTTGCCAATTTCTGCACTTAGATCGAATCC 102483 30 100.0 36 .............................. TCAGCGTGTTCTTCGTGTGTTTCAACTTTTCAACTA 102549 30 100.0 36 .............................. TTGAAGTCTGGGTAGGAGAACCGTACGAAATAATCA 102615 30 100.0 42 .............................. TGTGCCCCCACCATGTATAGCCACGAAATCTTCGTGACACCA 102687 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 7 30 95.2 38 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAGGAAACAGGTACTGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAATATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCGTCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGGATTTT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAACGAAAGAACACAAGCAAAAAACAGAA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 10362-11522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000015.1 Thermotoga sp. TBGT1765 Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 10362 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 10427 30 100.0 36 .............................. AATTTGAGCCCGGGGAGGAGGATTTCGAATGGCTAC 10493 30 100.0 37 .............................. GGGTAGAAGTTCCTGTTAATAGAGCTCAAGCCACACT 10560 30 100.0 35 .............................. CAACTGGACGAACTCGCCGAAAGTCATAAAATGCA 10625 30 100.0 36 .............................. TCATCCCTCTGTAGATGAAAAATCTCAGAAAGCTCA 10691 30 100.0 36 .............................. TAGGTTGGGTGGTGTAGAATTTGACCTTTACCAGCA 10757 30 100.0 36 .............................. GTTGGAAAGAGACGAAGAACTTATCAACATGATCAT 10823 30 100.0 36 .............................. TAAACGCAAGAGTCGAAAAAGGTATCAAGAAAACCA 10889 30 100.0 37 .............................. GTAGGAAGCCACAAGACCTCTTAGCTGCCCGTCGCTG 10956 30 100.0 36 .............................. GGACAATAGCTAAAAATAAAGTGGGAAATGGTTATG 11022 30 100.0 36 .............................. GTTTATATAGACTGCTATCTGTCCACGCAAGGATAT 11088 30 100.0 36 .............................. CAGAAGATTCAAAAGTCCCAAGCCGGCGTGGTATCT 11154 30 100.0 38 .............................. AGGAGGCGGTATTATGAAGTTGAGAGTGTATCGTATGT 11222 30 100.0 38 .............................. GTTGTTAACTGGGCACGAGACTATTACTACTCATACCA 11290 30 100.0 36 .............................. AAGAGATTTTGTTTCGTTTTTCTCATTGTTCTACGA 11356 30 100.0 41 .............................. AAAATTCTAGTTGGCCCAAGTTCTTTTGATGCAACAGTCGG 11427 30 100.0 36 .............................. TCTTCATCGAAAACACTTCTGCAAACAAGGGTGTTA 11493 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 18 30 99.4 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGTTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 1 103758-101848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000014.1 Thermotoga sp. TBGT1765 Contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 103757 30 93.3 36 .G..................G......... CCACGGAAAACCGAGTTTTAGACTTTGGTTGTCTTC 103691 30 96.7 37 ....................G......... CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 103624 30 100.0 39 .............................. CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 103555 30 100.0 36 .............................. TCTCACTTTCACTGATTCTGAAGAGAAACGGTGCGT 103489 30 100.0 36 .............................. CAACGTCTGCCTCGAACGAGATGAGATCTCCAACCA 103423 30 100.0 37 .............................. GGTTTTCACTCACATATTATCACAAATTCCCGGGTTG 103356 30 100.0 37 .............................. GAACCCTTATCTTCTTTGCCACGGTGTTCACCTCCAG 103289 30 100.0 37 .............................. GACGAGTACGTTCATGCTTTGTAGCAAGAGTACGACA 103222 30 100.0 41 .............................. CTTGAGGAACTGAAACGTGAGCGAGCAGAAGAAACAGAGGA 103151 30 100.0 36 .............................. AAAGCCATGCTCCCATTTGTGCGATTGAGTTCTGAA 103085 30 100.0 38 .............................. CCGGGGTTCAAAGATGCTGAATTAATTTTCAACCAACT 103017 30 100.0 36 .............................. GCCCATGTTACTTCATAGTTACCGCAGCGAATACTT 102951 30 96.7 36 ....................G......... GGTCCCAAGCAAGTGGTAGATATTTTGTTGGATCTC 102885 30 96.7 40 ....................G......... AAACCATAGTATTAGATATCAGGTTATTGAGGAAGAAATC 102815 30 96.7 37 ....................G......... GCAAACAGGAAGGTGGTTACACAGGGCCTGGTCCTGT 102748 30 96.7 36 ....................G......... GAAAGAAAGGGTCTTTGAAAAGTGAATAGGAAAATT 102682 30 96.7 38 ....................G......... GATGAGAAGTTGTATCGTCATGCACGGAACAACAAAGT 102614 30 96.7 37 ....................G......... CCTGGAATCATCCAACACCCGCCCTATGCCGCTGTCG 102547 30 100.0 42 .............................. TTGTGCCTGTAAAGGGGACGGTAGATACTGAAAGTCCATATA 102475 30 100.0 36 .............................. CATGGAGTCCCTCAACACGGGCATTCTTTGTGCTGG 102409 30 100.0 36 .............................. TATGGAGGTGATATTTATGAAGTTGAAGATCACATA 102343 30 100.0 37 .............................. CTTTTTTAGTTGCCGCATTAGAACCATATACATATCC 102276 30 100.0 38 .............................. AAGGGTTAAAGGAGGAAAAATTTCAAACACATTTACTT 102208 30 100.0 36 .............................. CACCTGAGGATATATCAGAGGAGGAAAGAGAGTTTA 102142 30 100.0 36 .............................. TGCCGTACCTTTATTGTGCTGAAACATATATAGGTA 102076 30 100.0 36 .............................. ACGGGAGTCTTAGTGCCGAAGAGCTTGTTGATAGGA 102010 30 100.0 37 .............................. GGTTATGTAGCCTTCCTCCCCCAGGACGTGGATTCTA 101943 30 100.0 36 .............................. CCCTCCCCCAGTTTTAATCTTTCTTGTTCCAACCTT 101877 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 29 30 99.0 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGACCGACGATCTCTTTCCTTCTTGCCCAGAGAACCACTTCTTCTCCGTTTTCATGCAGTATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGAACTTACGCATCATCGATTACCACAAATTCTCTTCGTATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 115922-116879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFG01000014.1 Thermotoga sp. TBGT1765 Contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 115922 30 93.3 37 ......G.............G......... TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT 115989 30 100.0 36 .............................. TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG 116055 30 100.0 36 .............................. CCTGCTTAACGATATTATCTCAACAAAGCTTCTGGA 116121 30 100.0 36 .............................. CTTAGGTCGTACCAATTAACACCATCTATTTTTGCA 116187 30 100.0 36 .............................. CGATGTCGCCGCCAAGTATTTCAGGGGTTTATCGGA 116253 30 100.0 36 .............................. ATTCCCTATGCCTCTTGACATCTATAGCTATTCATG 116319 30 100.0 36 .............................. TGTTCTGTTGTGGGATCGTATTTGAACTCACTCTCT 116385 30 100.0 38 .............................. GTGGGAAGGCGTGGACGTCATATTCATCGCACATTCGC 116453 30 100.0 35 .............................. CGTGCTTGAGTCGTAGGCTTCGGGTTTGATGCCGA 116518 30 100.0 37 .............................. GCGATTTCTTTAGCGGATATAGATTTATCTCTACTTC 116585 30 100.0 37 .............................. ATGTATCAGTAGAAGGAAATTATGTAAGTCCATATGA 116652 30 100.0 37 .............................. CCTCCACCTTGGGATTGGGATACCTCAAAGGGAATAT 116719 30 100.0 35 .............................. CTGGAAGTTTCATTGTCGAAAGGTATTCTTACACC 116784 30 100.0 36 .............................. TCCTACCGGTAAATGGTTCTTCGTTGTTCTCATCTT 116850 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.6 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCTCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTTATCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTATATCTATCTTCCAGTGCCAGATACACACATCACCTACTTTGTGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA //