Array 1 836157-832824 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGM02000001.1 Streptococcus sp. FDAARGOS_256 scf7180000000006_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 836156 36 100.0 30 .................................... AACCTACTGCAGGTCCAAAGGTTTCAAAAC 836090 36 100.0 30 .................................... ACTTGGACTGATCGATCCTAATCAAAGCTA 836024 36 100.0 30 .................................... CTTTGCCTTGCGAGGAAAAGAGCTCAACGA 835958 36 100.0 30 .................................... TATGATTTATGGTTAATAGACGGGTATTTA 835892 36 100.0 30 .................................... TTTTGAAGAGTTAGAAACATACCAACATTA 835826 36 100.0 30 .................................... TATTTGTTGATGAATGTAACAATTTTTTGA 835760 36 100.0 30 .................................... GGGTCTACGGTATAGGTGAATTGAGGCATT 835694 36 100.0 30 .................................... AGCTGAGATGATTAATCTTTGGGAACGTCC 835628 36 100.0 30 .................................... AGTAAGTTACAACTAAAAAAACAACTAAGA 835562 36 100.0 30 .................................... TAGAATATGCGTCAGAATTGGACGAATGGC 835496 36 100.0 30 .................................... CTATATTCAAAAATCTATTTTTAGGATTTT 835430 36 100.0 30 .................................... ATTTGAGCGGGATTGTTGCCATATTTAATA 835364 36 100.0 30 .................................... GAAACGTGGCGACACTAACAAAAATCGCTG 835298 36 100.0 30 .................................... TTCTCAATAATGATATAGAATGTACTTATT 835232 36 100.0 30 .................................... TCTCTTTGTAGTCCACGCCTTCCCAGTTAT 835166 36 100.0 31 .................................... AGTGACTTAATACCATCTATAAAAGCTTTAA 835099 36 100.0 31 .................................... GTCTTGCCTGAACGAATTGAACCATCTGCTA 835032 36 100.0 29 .................................... CTAAACACAACTTTTAAAAACTATATTTA 834967 36 100.0 30 .................................... AAATCTACATGACTGAAAGCGGACAAACTA 834901 36 100.0 29 .................................... CGCTTCTACATGGATGCATTCTTGATCAA 834836 36 100.0 28 .................................... TTCCAATAGGAAAGTAAAATACGATGAG 834772 36 100.0 30 .................................... CCTACGAGGTAGAGGAAGAGAAGCGGTACT 834706 36 100.0 30 .................................... ATTCAGCAAAGTAGCTCAAGAACTCCAAAA 834640 36 100.0 30 .................................... GTTTAATGTTACTCAGGTTACGTTTAATCT 834574 36 100.0 30 .................................... CGATGAAGACGCTTATAAAATCATATCAGA 834508 36 100.0 30 .................................... GGTCATTTTCAGATTGTCCACTATTCGTGC 834442 36 100.0 30 .................................... TGACGTTGACAAACTCTCACGCGGTCTTTA 834376 36 100.0 29 .................................... CTTGAACGCAGACTATGGTCAAACGTGGA 834311 36 100.0 30 .................................... ACTTGAAACGAAGATTAGTCCAGTCTTTTT 834245 36 100.0 30 .................................... CAATGAAGATTTATTAGAGGACTTGATCTA 834179 36 100.0 30 .................................... ACGGGCGCCTAGTGGTAAAATCTCAGGTAG 834113 36 100.0 30 .................................... AAAGGTTTATTATGATAGCATGAACTTCTG 834047 36 100.0 30 .................................... CAATAACCTCTTGGTCCTCTATCTTGCATT 833981 36 100.0 30 .................................... TCGTGTGATTGAAGATTTTAAAATTCGCTA 833915 36 100.0 30 .................................... CATCTACATCGAACTGCTCACCGTACATTT 833849 36 100.0 31 .................................... CTGTTAAGAAAGTTCCGTCACAATAGAAACT 833782 36 100.0 30 .................................... GATGGAAGAAGTTATTATGGCTACGTTGCC 833716 36 100.0 29 .................................... AATTTCTGCGCCTTGATTATCAGCCTTAT 833651 36 100.0 30 .................................... GATCATTCCAATTAAAGTATTAACTGGTCC 833585 36 100.0 30 .................................... GCTCGTCACCGACTGCGTCTTCTTTGTCTG 833519 36 100.0 30 .................................... AAGGTTCTGTTTACAGTTTTATCATTCCTG 833453 36 100.0 30 .................................... TTCTGCAAATGTTTCATCAATATGATTTAC 833387 36 100.0 30 .................................... AGCATTGACTTATTGACTACACCTTCGACA 833321 36 100.0 30 .................................... TCATCCATGATATGTTCACAATTTGGATGC 833255 36 100.0 30 .................................... CCTGTGCTTTTTGTTTTGCCAAAAAGTATA 833189 36 100.0 30 .................................... AAAATTCCTCGAAGGGTTCAAAGCTATTAT 833123 36 100.0 30 .................................... ACCGAGGTTACACCCTCCAAGCATTTCCGA 833057 36 100.0 30 .................................... TATGAAAAGAGAGGTCTCTATGATTTGGAA 832991 36 100.0 30 .................................... TTTTTTAGATGTTTGTCTAAAATGAAAGCA 832925 36 100.0 30 .................................... ATAAATCGGGCGTGCACATTTATGGTACAT 832859 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 51 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAGTAACTTACTCTATATAGTCTCATTTCCTTCAAATGAGGGTTATCTTCATGTAACTAAAGAAGTACTAGAGGAAATCAATATCGTTTCCGATTATGTAGATCATTTTTATTCCTTAGAATTTATGTATGAACGATTTATTAATCAATATCCAATAAATCAAATACCTGATGAACAAGACTTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCTGATATTCTTCATATGAGTTTATCTATAGAAGATCAAGTAGCATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAAGCGGTCAATCCAATGTTATTGAAATATTTGAAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : AGGCTAAATTGGATCCAGGATTAGCAATTGGAGCGAAAACGCTCTCTCTTATTTCTTACAGATTAGCTCCCCAGTATGATATAATGTCATTTAGAAGAAACCAGAGAATATAGGAGTCGAAACGATGCTAGCTATTTGTATCGATTCTATATGTGACAAGACAGGAACCTATAAGTTGTTAAGAAATTATTCATCCTTACCTTTCTCTTTAATCCAATCCAGAATCAAAGATCATGACACGGTGATAGAAGTAGACATGTTAGATTTGGATGAATTGAAAAAGGTTAGAGAACTCATCCGTGAGTTGAGTGCTATTGGGACCAAGGTTACGATGAGGGATTCGACTGGTATTATCACCTTAGAATTTTTAAATAATATTATTTCTACCTTCGAAGAGATTGCGGCTGAAAGAGAAGAATTAGATGCTCTGATGTTTGAGGAGGAAGAGTGATTGTCACCTTTTCCAGTGAATCATACATTCCCAAGATAATTTTTAGTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1102895-1101826 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGM02000001.1 Streptococcus sp. FDAARGOS_256 scf7180000000006_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1102894 28 100.0 33 ............................ CCAAATCTTTTTCAGCGACGTATTCTGTACCAC 1102833 28 100.0 33 ............................ TGATGATGGTACTTTTCTAGTATCAGAGTGTAA 1102772 28 100.0 33 ............................ TCAGTCTAACCCCAACTTTAACAAGGTATATTG 1102711 28 100.0 33 ............................ TGCTCTCCATCGATGTCCCCATCTTATTAGCAT 1102650 28 100.0 33 ............................ TGACCAAGCGGACGGCTCCGCCATTGTCCGCCC 1102589 28 100.0 34 ............................ CGGAATTGATAACTTTCATGGTTGGCAATCCATA 1102527 28 100.0 33 ............................ TGGTCTTACGTTATCAACCAGGACTTCCTAAAC 1102466 28 100.0 33 ............................ CTGACGAACCTAAACCATTGAATGTTACCAAAG 1102405 28 100.0 33 ............................ TGGCAAGATTGGTTCTTAGGTTCAGAGAAAAGA 1102344 28 96.4 33 ....................T....... CAAAGAGGTAGCATCTGAGCAGCTGACCCTTAT 1102283 28 100.0 33 ............................ CGGTGATATCGTATCGATGCCTTATCCGTATGA 1102222 28 100.0 33 ............................ CGGTGCAGCAACATTTGAACGCAAAGTGACCTT 1102161 28 100.0 33 ............................ CATGCTACGAAATTCGAGGGCGGACGACGGTTT 1102100 28 100.0 33 ............................ TGGTATTTTCTCTAAAACAATCCAGATTGGACG 1102039 28 96.4 33 ....................T....... TTCACTTTAGAGGGTGCTAGTGGTTCTCTTGCT 1101978 28 92.9 33 .......T................T... TGTAATGTGCCGTTACTTCTGCCACAATAGCAA 1101917 28 100.0 33 ............................ TGGCGAACTTCACACAGACCAAGCTTTTAAAAC 1101856 28 78.6 0 .......G....T...TA..A.....A. | C,TA [1101829,1101833] ========== ====== ====== ====== ============================ ================================== ================== 18 28 98.0 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : ATAAAATGAGATATAAGAAAAATATCCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAAGCATATTCTGTGTAAATGAAGATATCTTACATAACAAAGGAGAAGACAAGTGAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGAAGAGTATAAGAAAATTTGTCTTGTATCTGTTGCCTTAGAGTGTTTCAGAACTAAATGTTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCCTAGCTCTCCTAGCTGGTGCTAGTGAGTCGGAAGTTGCTCCACTGGTCGAGCACTTGATCGCAGATAAAACCTTTAACTTAGAGACAGCTCAACGCTATCTCGAAAACTTAAGATCATAAAAAACTCAGACGAATTCGTCTGAGTTTTCTTGTGCTTATAGGCAATGAAAATCAAAAAGCAAACTAGGAAGCTAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //