Array 1 286353-287161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQH010000001.1 Listeria innocua strain FSL L7-1624 NODE_1_length_1425727_cov_44.940847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 286353 29 100.0 37 ............................. TTGTTCTTAGTTGCATAAACTACGGGCTGGTTTTCGC 286419 29 100.0 35 ............................. TTCACAACAGAATGTGGGAGGTCATACTGTTCACA 286483 29 100.0 37 ............................. CCACAAACTGTCTTCCTTTCAGTTTCAAACACTTAAT 286549 29 100.0 36 ............................. GGCACTAAGCTATCTTGGTATGATAATCGGAAGGGC 286614 29 96.6 38 ..............A.............. TAGGCAGCGTCAGCAATAGTGGTGAAAACAGGTTCTAC 286681 29 96.6 36 ..............A.............. TCGCGATTCATGTAAATCATTCGATAGGTCTGTTTG 286746 29 96.6 36 ..............A.............. TGACAAAGTATCCGTGCACCAATTCCCCGTTATCTA 286811 29 96.6 37 ................A............ ACAAGACGCATACAACTTTAGAGGTGAGCGAAATCGA 286877 29 96.6 34 ..............A.............. GTGTACTCTAATGCCAAATTTAATTCCTCCTATT 286940 29 93.1 34 ..............A...A.......... GCAATACTGAAAGCTTGGCACGGAAATTCTCCTG 287003 29 96.6 36 ..............A.............. TCGACATAACACATATATTTAAAATCATTAAAACTA 287068 29 100.0 36 ............................. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 287133 29 75.9 0 A.....AG.......CA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 96.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGGAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAAGTCGACAGAAATAGCTCTTTGAGGTAATATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATTCTCTTTAATTTCAGTATAATGGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 302867-303741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQH010000001.1 Listeria innocua strain FSL L7-1624 NODE_1_length_1425727_cov_44.940847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 302867 29 100.0 37 ............................. AGACGAACAGCTAGAAGCATTGCAAGAAAGCGATTCT 302933 29 100.0 37 ............................. CAAGTAACAGGAAAAGGACAAGTATATCTATTAAATA 302999 29 100.0 36 ............................. AGAGATTACAGAGCAAAAGGATGCTTTAATCGCAGA 303064 29 100.0 36 ............................. AATGGTATATTTTGTCAACAGGTTTATCCTATTTAG 303129 29 100.0 37 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTT 303195 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 303260 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 303326 29 100.0 34 ............................. TTCCGTTTCTCTCTTTTGTATTGCCTTTCTTCAT 303389 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 303453 29 100.0 35 ............................. CAATAATGAAGTGATTTGTTTATCACCACATGCTA 303517 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 303582 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 303647 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 303712 29 86.2 0 ...............C..A....A....C | C [303735] ========== ====== ====== ====== ============================= ===================================== ================== 14 29 99.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAATTCCAGCGCTTTTAGTTAAGTTAAGTATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGTTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCACAACCGCCGGCAAGCCCTGCTTCACCAAAATTCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACGACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCAGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAATAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //